View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10823_low_6 (Length: 240)
Name: NF10823_low_6
Description: NF10823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10823_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33189953 - 33190161
Alignment:
| Q |
1 |
ttaacaatactaatattaagttttcgtaactaatatgaaaacttaattagacctaaattatcgattattgtgagatggagggactaatattgttaattgt |
100 |
Q |
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| T |
33189953 |
ttaacaatactaatattaagttttcgtacctaatatgaaaacttaattagacctaaattattgatgattgtgagatggagggactaatatcgttaattgt |
33190052 |
T |
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| Q |
101 |
agaaataagtgagctttagacagttacttatattacaagttactatgcatatgtttatatctaatgaaccacttaacagttgtttggttgtcggttagtt |
200 |
Q |
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| T |
33190053 |
agaaataagtgagctttagacagttacttatattacaagttactatgcatatgtttatatctaatgaaccacttaacagttggttggttgtcagttagtt |
33190152 |
T |
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| Q |
201 |
agttaggat |
209 |
Q |
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||||||||| |
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| T |
33190153 |
agttaggat |
33190161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 28015435 - 28015382
Alignment:
| Q |
90 |
ttgttaattgtagaaataagtgagctttagacagttacttatattacaagttac |
143 |
Q |
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|||||||| ||| ||||||| ||||||| ||||||||||| ||||||||||||| |
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| T |
28015435 |
ttgttaatggtaaaaataagcgagctttggacagttacttgtattacaagttac |
28015382 |
T |
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