View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10823_low_7 (Length: 239)
Name: NF10823_low_7
Description: NF10823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10823_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 30419501 - 30419629
Alignment:
| Q |
18 |
accttcgtcagcaaaaactttatcttttagaggaagatccacttcattctgtgcaacatcactatgcaagatcctatttattgatggtgtactaaatggt |
117 |
Q |
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| T |
30419501 |
accttcgtcggcaaaaactttatcttttagaggaagatccacttcattctctgcaacatcactgtgcaagatcctattcattgatggtgtactaaatggt |
30419600 |
T |
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| Q |
118 |
taaatataccaaaattgtaatggttattg |
146 |
Q |
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| T |
30419601 |
taaatataccaaaattgtaatggttattg |
30419629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 30431375 - 30431475
Alignment:
| Q |
17 |
aaccttcgtcagcaaaaactttatcttttagaggaagatccacttcattctgtgcaacatcactatgcaagatcctatttattgatggtgtactaaatgg |
116 |
Q |
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||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30431375 |
aaccttcatcaacataaactttatcttttagaggaagatccacttcattctgtgcaacatcactatgcaagatcctattcattgatggtgtactaaatgg |
30431474 |
T |
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| Q |
117 |
t |
117 |
Q |
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| T |
30431475 |
t |
30431475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 30431883 - 30432012
Alignment:
| Q |
17 |
aaccttcgtcagcaaaaactttatcttttagaggaagatccacttcattctgtgcaacatcactatgcaagatcctatttattgatggtgtactaaatgg |
116 |
Q |
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||||||| |||||| |||| |||||||| |||| || |||| ||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||| |
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| T |
30431883 |
aaccttcatcagcagaaacattatctttaagagaaatatccgcttcattgtgtgcagtatcactagccaagatcctattcattgatggtgtactaaatgg |
30431982 |
T |
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| Q |
117 |
ttaaatataccaaaattgtaatggttattg |
146 |
Q |
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| T |
30431983 |
ttaaatataccaaaattgtaatggttattg |
30432012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 30440450 - 30440497
Alignment:
| Q |
99 |
tgatggtgtactaaatggttaaatataccaaaattgtaatggttattg |
146 |
Q |
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| T |
30440450 |
tgatgttgtcctaaatggttaaatataccaaaattgtaatggttattg |
30440497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 30447559 - 30447631
Alignment:
| Q |
17 |
aaccttcgtcagcaaaaactttatcttttagaggaagatccacttcattctgtgcaacatcactatgcaagat |
89 |
Q |
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|||||||||||||| ||||||| ||||| |||| |||||| |||| ||| |||||| ||||||||||||||| |
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| T |
30447559 |
aaccttcgtcagcataaactttgtctttaagagaaagatctactttattgcgtgcaagatcactatgcaagat |
30447631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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