View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10824_1 (Length: 365)
Name: NF10824_1
Description: NF10824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10824_1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 365
Target Start/End: Original strand, 42464925 - 42465287
Alignment:
| Q |
7 |
tcgaagaatataaatgcctagaatctagactagctaaaaaccactttgaggtatttaagttcaatttcatggacttctatgtactttttgaatatctaaa |
106 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42464925 |
tcgaaaaatataaatgcctagactctagactagctaaaaaccactttgaggtatttaagttcaatttcatggacttctatgtactttttgaatatctaaa |
42465024 |
T |
|
| Q |
107 |
ttcagctagtgaaaatgtttaattatataattaacaacgtgcagctgtgaaagaattgataatcctctg----gatatatcgtatgattaaacatgttgg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
42465025 |
ttcagctagtgaaaatgtttaattatataattaacaacgtgcagctgtgaaagaattgttaatcctctgagaggatatatcatatgattaaacatgttgg |
42465124 |
T |
|
| Q |
203 |
cacgactttatattttgtacagtaacaccattttctttacttatttaagaaatacggtaatgatataatattcctggatcattctccatgtaactacatc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42465125 |
cacgactttatattttgtacagtaacaccattttctttacttatttaagaaatacggtaatgatataatattcctggatcattctccatgtaactacatc |
42465224 |
T |
|
| Q |
303 |
attggctagcaatactgtttctagacaataacttaacaaaaaatatacaaacaaacaaacaac |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42465225 |
attggctagcaatactgtttctagacaataacttaacaaaaaatatacaaacaaacaaacaac |
42465287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University