View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10825_high_1 (Length: 323)
Name: NF10825_high_1
Description: NF10825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10825_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-178
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 38150540 - 38150222
Alignment:
| Q |
1 |
taagcactcctttgattttctcttcttcttgccttctacactttcttacttaccaattggaagtggagggatactttgctcatgcctaaagaaattagat |
100 |
Q |
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| T |
38150540 |
taagcactcctttgattttctcttcttcttgccttctacactttcttacttaccaattggaagtgaagggatactttgctcatgcctaaagaaattagat |
38150441 |
T |
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| Q |
101 |
ggatcaactttagttttcacctttactaacctattgaagttacccttaaaatacctataaccccaagagttagcaagagaaagacttgtacaattcttct |
200 |
Q |
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| T |
38150440 |
ggatcaactttagttttcacctttactaacctattgaagttacccttaaaatacctataaccccaagagttagcaagagaaagacttgtacaattcttct |
38150341 |
T |
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| Q |
201 |
tgttcatccctatatccaaatctctataattcacatagttttcccttggattttttgatgcataaggagtcatataggagtaaaatttcctcatccagct |
300 |
Q |
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| T |
38150340 |
tgttcatccctatatccaaatctctataattcacatagttttcccttggattttttgatgcataaggagtcatataggagtaaaatttcctcatccagct |
38150241 |
T |
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| Q |
301 |
catatgttttgccatattc |
319 |
Q |
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||||||||||||||||||| |
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| T |
38150240 |
catatgttttgccatattc |
38150222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 38161400 - 38161261
Alignment:
| Q |
24 |
tcttcttgccttctacactttcttacttaccaattggaagtggagggatactttgctcatgcctaaagaaattagatggatcaactttagttttcacctt |
123 |
Q |
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| T |
38161400 |
tcttcttgtcttatacactttcttacttaccagttggcaatggagggatgctctgctcatgcctaaagaaattggacggagcaactttaattttcacctt |
38161301 |
T |
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| Q |
124 |
tactaacctattgaagttacccttaaaatacctataaccc |
163 |
Q |
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| T |
38161300 |
tactatcctgttgaaattacccttaaaatagctatcaccc |
38161261 |
T |
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