View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10825_high_5 (Length: 228)

Name: NF10825_high_5
Description: NF10825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10825_high_5
NF10825_high_5
[»] chr1 (12 HSPs)
chr1 (6-212)||(8861270-8861476)
chr1 (56-212)||(9124895-9125051)
chr1 (5-198)||(8978690-8978883)
chr1 (101-189)||(8962768-8962856)
chr1 (101-212)||(9069469-9069583)
chr1 (105-213)||(9097887-9097995)
chr1 (101-212)||(9085768-9085879)
chr1 (101-159)||(8939871-8939929)
chr1 (107-173)||(9235972-9236038)
chr1 (103-173)||(9378195-9378265)
chr1 (101-148)||(8927459-8927506)
chr1 (101-150)||(9495781-9495830)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 8861270 - 8861476
Alignment:
Q  6 tcgagtgagaagaattaggaggcacaattaactcgatatcctctccggcttccaacatttgcacaacattttttattgatggacgatttgtcggttgcca 105  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8861270 tcgagtgaaaaggattaggaggcacaattaactcgatatcctctccggtttccaacatttgcacaacattttttattgatggacgatttatcggttgcca 8861369  T
Q  106 ttgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacgtatatctccttccaataagttatgg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8861370 ttgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacttatatctccttccaataagttatgg 8861469  T
Q  206 atccatt 212  Q
    |||||||    
T  8861470 atccatt 8861476  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 9124895 - 9125051
Alignment:
Q  56 tccaacatttgcacaacattttttattgatggacgatttgtcggttgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagat 155  Q
    ||||||||||| |  |||  |||||| || ||||||||| | || ||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||    
T  9124895 tccaacatttgtatcacagcttttatggagggacgatttattggctgccattgaatacaccaaagtccaacaattgcgagtttctttgcaattttaatat 9124994  T
Q  156 ctccttcatcctcaatatggatacgtatatctccttccaataagttatggatccatt 212  Q
    |  | ||||| |||||||  ||| || ||||||||||||||| |||||| |||||||    
T  9124995 catcctcatcttcaatatttatatgtgtatctccttccaataggttatgaatccatt 9125051  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 8978690 - 8978883
Alignment:
Q  5 gtcgagtgagaagaattaggaggcacaattaactcgatatcctctccggcttccaacatttgcacaacattttttattgatggacgatttgtcggttgcc 104  Q
    |||| |||| ||| ||||||||||||| |||| | | | || ||||| |  ||||||||||| |  |||  ||| || ||||||||||||   || ||||    
T  8978690 gtcgggtgaaaaggattaggaggcacagttaattggttgtcttctccagtctccaacatttggatgacagatttgatggatggacgatttccggggtgcc 8978789  T
Q  105 attgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacgtatatctccttccaataa 198  Q
    | |||||||||||||||||||||||||||||||| || |||||||||  ||| |  ||||| ||||| |||||| |||| ||||||||||||||    
T  8978790 actgaatgcaccaaagtccaacaattgcaagttttttggcaattttataatcacactcatcgtcaatgtggatatgtatgtctccttccaataa 8978883  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 8962856 - 8962768
Alignment:
Q  101 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacgtatatctcc 189  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||| ||  |||||| || || |||||| ||||| ||||||||||    
T  8962856 tgccactgaatgcaccaaagtccgacaattgctagtttctttgcaattctataatctccatcttcatcaatagggatatgtatatctcc 8962768  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 9069469 - 9069583
Alignment:
Q  101 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagat---ctccttcatcctcaatatggatacgtatatctccttccaata 197  Q
    ||||| ||||| ||||||||||| ||||||||||||||| |||||||||||  ||   |  ||||||| |||| ||  ||| |||| |||||||||||||    
T  9069469 tgccactgaatacaccaaagtccgacaattgcaagtttccttgcaattttagcattgccaacttcatcttcaacatttatatgtatgtctccttccaata 9069568  T
Q  198 agttatggatccatt 212  Q
    ||||||| |||||||    
T  9069569 agttatgaatccatt 9069583  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 9097887 - 9097995
Alignment:
Q  105 attgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacgtatatctccttccaataagttatg 204  Q
    ||||||||||||||||| |  ||||||||||||||||||| | ||||| ||| |||||  | |||||||  |||  ||| ||||||||||||||| | ||    
T  9097887 attgaatgcaccaaagttcggcaattgcaagtttctttgccagtttaacatcaccttccccttcaatatttatatatatgtctccttccaataaggtttg 9097986  T
Q  205 gatccattt 213  Q
     ||||||||    
T  9097987 aatccattt 9097995  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 9085768 - 9085879
Alignment:
Q  101 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacgtatatctccttccaataagt 200  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||  ||   ||| ||||| || |||||||  |||  ||| |||||||||||||| |    
T  9085768 tgccactgaatgcaccaaagtccgacaattgcgagtttctttgcaaacttcgcatcaccttcgtcttcaatattcatatatatgtctccttccaataaat 9085867  T
Q  201 tatggatccatt 212  Q
    |||  |||||||    
T  9085868 tataaatccatt 9085879  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 8939929 - 8939871
Alignment:
Q  101 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctcc 159  Q
    ||||| ||||||||||||||||| ||||| || ||||||||||||||| ||| ||||||    
T  8939929 tgccactgaatgcaccaaagtccgacaatcgctagtttctttgcaattctaaaatctcc 8939871  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 9235972 - 9236038
Alignment:
Q  107 tgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatat 173  Q
    ||||| ||||||||||| || |  |||||||||||||||||| ||| |||||| |||||||||||||    
T  9235972 tgaatacaccaaagtccgaccagcgcaagtttctttgcaattctaacatctccctcatcctcaatat 9236038  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 9378265 - 9378195
Alignment:
Q  103 ccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatat 173  Q
    ||||||||| ||||||||||| || |  |||||||||||||| ||| ||| |||||| |||||||||||||    
T  9378265 ccattgaatacaccaaagtccgaccagcgcaagtttctttgcgattctaacatctccctcatcctcaatat 9378195  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 8927506 - 8927459
Alignment:
Q  101 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaatt 148  Q
    ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  8927506 tgccactgaatgcaccaaagtccgacaattgctagtttttttgcaatt 8927459  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 9495830 - 9495781
Alignment:
Q  101 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaatttt 150  Q
    ||||||||||| |||||||||||| |||| ||||||||||| || |||||    
T  9495830 tgccattgaatacaccaaagtccagcaatcgcaagtttcttcgctatttt 9495781  T

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