View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10825_low_7 (Length: 235)
Name: NF10825_low_7
Description: NF10825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10825_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 20210705 - 20210910
Alignment:
| Q |
17 |
aattgatgtagaagggtttgggatgttacttcctttgatttatattgacaattgtctaaccaagtggttgaagcgttggacttacgagattaataacgaa |
116 |
Q |
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| T |
20210705 |
aattgatgtagaagggtttgggatgttacttcctttgatttatattgacaattgtctaaccaagtggttggagcgttggacttacgtgattaatgacgaa |
20210804 |
T |
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| Q |
117 |
tcgttgaaagaactcaattgtaaactctaacaaacggaaatgttgtttacagcgaattttttcttcaagaaagcatcacgatcgctataccatttatctc |
216 |
Q |
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| T |
20210805 |
tcgttgtaagaactcaattctaaattctaataaacggaaatgttgtttacagcgaattttttcttcgagaaagcatcacgaccattataccatttatctc |
20210904 |
T |
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| Q |
217 |
tctctg |
222 |
Q |
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|||||| |
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| T |
20210905 |
tctctg |
20210910 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 5623703 - 5623762
Alignment:
| Q |
153 |
gaaatgttgtttacagcgaattttttcttcaagaaagcatcacgatcgctataccatttat |
213 |
Q |
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| T |
5623703 |
gaaatgctgtttacagcaaattttct-ttcaagaaagcatcacgaccgctataccatttat |
5623762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 21168990 - 21169049
Alignment:
| Q |
153 |
gaaatgttgtttacagcgaattttttcttcaagaaagcatcacgatcgctataccatttat |
213 |
Q |
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| T |
21168990 |
gaaatgctgtttacagcaaattttct-ttcaagaaagcatcacgaccgctataccatttat |
21169049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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