View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10826_high_4 (Length: 253)
Name: NF10826_high_4
Description: NF10826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10826_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 55015520 - 55015759
Alignment:
| Q |
14 |
agacgttataatgttccttttcgccctcgcctttcttaggtggtggtggcgccgttggtcaaagaccgggggcggcactaaaaacctaccaccgggagtt |
113 |
Q |
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| T |
55015520 |
agacgttataatgttccttttcgccctcgcctttcttaggtggtggtggcgccgttggtcaaagaccgggggcggcactaaaaacctaccaccgggagtt |
55015619 |
T |
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| Q |
114 |
ccgggttggccaatcgttggcaatctcttccaagttatcctccaacgccgtcctttcatctacatagttcgtgatttacgtctaaaatacggtccaattt |
213 |
Q |
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| T |
55015620 |
ccgggttggccaatcgttggcaatcttttccaagttatcctccaacgccgtcctttcatctacatagttcgtgatttacgtttaaaatacggtccaattt |
55015719 |
T |
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| Q |
214 |
tcacaatgcaaatgggtcaacgcaccttgattatagtcac |
253 |
Q |
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| T |
55015720 |
tcacaatgcaaatgggtcaacgcaccttgattatagtcac |
55015759 |
T |
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