View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10826_high_5 (Length: 241)

Name: NF10826_high_5
Description: NF10826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10826_high_5
NF10826_high_5
[»] chr1 (19 HSPs)
chr1 (19-241)||(5463775-5463998)
chr1 (207-241)||(48259782-48259816)
chr1 (205-241)||(10842980-10843016)
chr1 (206-237)||(26755180-26755211)
chr1 (210-241)||(28751330-28751361)
chr1 (205-240)||(52125051-52125086)
chr1 (207-237)||(2458969-2458999)
chr1 (207-241)||(2459205-2459239)
chr1 (207-237)||(7375250-7375280)
chr1 (211-241)||(11134383-11134413)
chr1 (207-241)||(13408253-13408287)
chr1 (207-241)||(48009210-48009244)
chr1 (207-241)||(48319924-48319958)
chr1 (204-241)||(40719214-40719251)
chr1 (207-239)||(1740557-1740589)
chr1 (209-241)||(15573813-15573845)
chr1 (205-237)||(27720918-27720950)
chr1 (207-235)||(32807100-32807128)
chr1 (205-241)||(49426334-49426370)
[»] chr8 (15 HSPs)
chr8 (205-241)||(4530066-4530102)
chr8 (136-189)||(13765468-13765521)
chr8 (205-237)||(18673260-18673292)
chr8 (207-241)||(9022595-9022629)
chr8 (207-237)||(34168368-34168398)
chr8 (207-237)||(39463220-39463250)
chr8 (207-241)||(39463457-39463491)
chr8 (207-237)||(39698827-39698857)
chr8 (205-233)||(396142-396170)
chr8 (205-241)||(4760476-4760512)
chr8 (205-241)||(8382404-8382440)
chr8 (209-241)||(8471458-8471490)
chr8 (205-233)||(27109737-27109765)
chr8 (207-239)||(34168131-34168163)
chr8 (205-241)||(41790057-41790093)
[»] chr4 (22 HSPs)
chr4 (206-241)||(45889761-45889796)
chr4 (207-241)||(37654610-37654644)
chr4 (205-241)||(2493302-2493338)
chr4 (205-241)||(2728319-2728355)
chr4 (205-241)||(6462212-6462248)
chr4 (205-241)||(32140796-32140832)
chr4 (205-241)||(54042103-54042139)
chr4 (204-239)||(29519445-29519480)
chr4 (207-241)||(24941080-24941114)
chr4 (207-241)||(29840251-29840285)
chr4 (207-241)||(30492916-30492950)
chr4 (207-241)||(31941753-31941787)
chr4 (207-241)||(34124493-34124527)
chr4 (207-241)||(39985017-39985051)
chr4 (207-241)||(47321343-47321377)
chr4 (207-237)||(47817697-47817727)
chr4 (207-241)||(52957713-52957747)
chr4 (207-241)||(54234014-54234048)
chr4 (204-233)||(22220290-22220319)
chr4 (204-241)||(27653874-27653911)
chr4 (205-233)||(40010793-40010821)
chr4 (205-241)||(55126695-55126731)
[»] chr7 (19 HSPs)
chr7 (207-241)||(40299038-40299072)
chr7 (204-241)||(33056200-33056237)
chr7 (205-237)||(32345998-32346030)
chr7 (205-240)||(7795158-7795193)
chr7 (210-241)||(22298201-22298232)
chr7 (207-241)||(1742191-1742225)
chr7 (207-241)||(19906614-19906648)
chr7 (207-241)||(32345753-32345787)
chr7 (207-241)||(37815924-37815958)
chr7 (207-241)||(44453333-44453367)
chr7 (205-234)||(715789-715818)
chr7 (204-233)||(18270775-18270804)
chr7 (207-240)||(36836273-36836306)
chr7 (205-234)||(37502279-37502308)
chr7 (208-237)||(45499987-45500016)
chr7 (207-235)||(1741953-1741981)
chr7 (205-241)||(5723186-5723222)
chr7 (205-237)||(27935971-27936003)
chr7 (205-241)||(40207304-40207340)
[»] chr3 (26 HSPs)
chr3 (207-241)||(44648329-44648363)
chr3 (205-241)||(16240767-16240803)
chr3 (205-237)||(38016335-38016367)
chr3 (205-241)||(42791496-42791532)
chr3 (205-241)||(43736788-43736824)
chr3 (205-241)||(44854513-44854549)
chr3 (207-241)||(2988527-2988561)
chr3 (207-241)||(4392095-4392129)
chr3 (207-237)||(20512657-20512687)
chr3 (207-241)||(23525232-23525266)
chr3 (207-241)||(38363991-38364025)
chr3 (207-241)||(51398210-51398244)
chr3 (207-241)||(52222769-52222803)
chr3 (207-237)||(54261377-54261407)
chr3 (205-234)||(44645299-44645328)
chr3 (204-241)||(45566996-45567033)
chr3 (205-241)||(2567929-2567965)
chr3 (205-241)||(25061893-25061929)
chr3 (207-239)||(30186377-30186409)
chr3 (207-239)||(31290893-31290925)
chr3 (205-241)||(36729686-36729722)
chr3 (207-239)||(41287412-41287444)
chr3 (207-239)||(44676423-44676455)
chr3 (205-237)||(51397969-51398001)
chr3 (207-239)||(54261619-54261651)
chr3 (205-241)||(54933120-54933156)
[»] chr2 (13 HSPs)
chr2 (207-241)||(441150-441184)
chr2 (203-241)||(34225949-34225987)
chr2 (210-241)||(29396602-29396633)
chr2 (207-237)||(4132985-4133015)
chr2 (207-241)||(4133222-4133256)
chr2 (205-239)||(7743602-7743636)
chr2 (207-241)||(12342293-12342327)
chr2 (207-241)||(43388576-43388610)
chr2 (205-233)||(4840891-4840919)
chr2 (205-237)||(13561952-13561984)
chr2 (209-241)||(14698189-14698221)
chr2 (205-241)||(25383402-25383438)
chr2 (205-241)||(29809013-29809049)
[»] chr5 (9 HSPs)
chr5 (204-241)||(38982070-38982107)
chr5 (205-237)||(14620656-14620688)
chr5 (207-237)||(21375812-21375842)
chr5 (207-241)||(24436459-24436493)
chr5 (207-241)||(42103982-42104016)
chr5 (207-237)||(42104226-42104256)
chr5 (208-237)||(40330873-40330902)
chr5 (205-241)||(2729703-2729739)
chr5 (209-241)||(42661861-42661893)
[»] scaffold0565 (1 HSPs)
scaffold0565 (207-239)||(9579-9611)
[»] scaffold0007 (1 HSPs)
scaffold0007 (204-240)||(158289-158325)
[»] scaffold0047 (1 HSPs)
scaffold0047 (207-237)||(70616-70646)
[»] chr6 (5 HSPs)
chr6 (207-237)||(17246767-17246797)
chr6 (207-237)||(29927169-29927199)
chr6 (209-241)||(234225-234257)
chr6 (205-241)||(24163630-24163666)
chr6 (205-237)||(32429245-32429277)
[»] scaffold2107 (1 HSPs)
scaffold2107 (205-237)||(674-706)
[»] scaffold0110 (1 HSPs)
scaffold0110 (205-237)||(24902-24934)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 5463998 - 5463775
Alignment:
Q  19 atgtgagtaacatgtgtttcacaattttttataaccaaatttcttcttagcttcgccggtgaataacatgatcagaaaatcat--gtcatggaaaacttg 116  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||    
T  5463998 atgtgagtaacatgtgtttcacatttttttataaccaattttcttcttagcttcactggtgaataacatgatcagaaaatcatatgtcatggaaaacttg 5463899  T
Q  117 attcaaatcaagatgccacgtgtcgataatttcttacgagatttgcatttccataaataaatttgaagaaaaccctcaaatatatgctcatccgtttcaa 216  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  5463898 attcatatcaaggtgccacgtgtcgatcatttcttacgagatttgcatttccataaataaatttgaagaaaaccctcaaatatactc-catccgtttcaa 5463800  T
Q  217 aatgagtgtcgttttagccaattgc 241  Q
    ||||||||||| |||||||||||||    
T  5463799 aatgagtgtcgctttagccaattgc 5463775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 48259782 - 48259816
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||||||||||||||||    
T  48259782 tccgtttcaaaatgagtgtcgttttagccaattgc 48259816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 10843016 - 10842980
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||||||||| |||||||    
T  10843016 catccgtttcaaaatgagtgtcgttttagtcaattgc 10842980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 26755180 - 26755211
Alignment:
Q  206 atccgtttcaaaatgagtgtcgttttagccaa 237  Q
    ||||||||||||||||||||||||||||||||    
T  26755180 atccgtttcaaaatgagtgtcgttttagccaa 26755211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 28751330 - 28751361
Alignment:
Q  210 gtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||||||||||||    
T  28751330 gtttcaaaatgagtgtcgttttagccaattgc 28751361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 52125051 - 52125086
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattg 240  Q
    ||||||||| ||||||||||||||||||||||||||    
T  52125051 catccgttttaaaatgagtgtcgttttagccaattg 52125086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 2458969 - 2458999
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  2458969 tccgtttcaaaatgagtgtcgttttagccaa 2458999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 2459239 - 2459205
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  2459239 tccgtttcaaaatgagtgtcgctttagccaattgc 2459205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 7375250 - 7375280
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  7375250 tccgtttcaaaatgagtgtcgttttagccaa 7375280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 11134383 - 11134413
Alignment:
Q  211 tttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||||||||||||    
T  11134383 tttcaaaatgagtgtcgttttagccaattgc 11134413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 13408253 - 13408287
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||| |||||||||||||||||||||||||||    
T  13408253 tccgttttaaaatgagtgtcgttttagccaattgc 13408287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 48009244 - 48009210
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||||||| |||||||    
T  48009244 tccgtttcaaaatgagtgtcgttttagtcaattgc 48009210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 48319924 - 48319958
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  48319924 tccgtttcaaaatgagtgtcgctttagccaattgc 48319958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 40719251 - 40719214
Alignment:
Q  204 tcatccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  40719251 tcatccgttttgaaatgagtgtcgttttagccaattgc 40719214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 1740557 - 1740589
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaatt 239  Q
    ||||||||||||||| |||||||||||||||||    
T  1740557 tccgtttcaaaatgaatgtcgttttagccaatt 1740589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 15573845 - 15573813
Alignment:
Q  209 cgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||| |||||||||||||||||||    
T  15573845 cgtttcaaaatgaatgtcgttttagccaattgc 15573813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 27720918 - 27720950
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaa 237  Q
    ||||||||||||||||||||||| |||||||||    
T  27720918 catccgtttcaaaatgagtgtcgctttagccaa 27720950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 32807128 - 32807100
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagcc 235  Q
    |||||||||||||||||||||||||||||    
T  32807128 tccgtttcaaaatgagtgtcgttttagcc 32807100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 49426334 - 49426370
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  49426334 catccgtttcaaaatgagtgtcgctttaggcaattgc 49426370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 4530102 - 4530066
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  4530102 catccgtttcaaaatgagtgtcgttttagccaattgc 4530066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 13765468 - 13765521
Alignment:
Q  136 gtgtcgataatttcttacgagatttgcatttccataaataaatttgaagaaaac 189  Q
    |||||||| |||||||  |||||||||||||||||||||| |||||| ||||||    
T  13765468 gtgtcgatcatttcttgtgagatttgcatttccataaatacatttgaggaaaac 13765521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 18673292 - 18673260
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||||    
T  18673292 catccgtttcaaaatgagtgtcgttttagccaa 18673260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 9022629 - 9022595
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||| |||||||||||||||||||||||||||    
T  9022629 tccgttttaaaatgagtgtcgttttagccaattgc 9022595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 34168398 - 34168368
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  34168398 tccgtttcaaaatgagtgtcgttttagccaa 34168368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 39463220 - 39463250
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  39463220 tccgtttcaaaatgagtgtcgttttagccaa 39463250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 39463491 - 39463457
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  39463491 tccgtttcaaaatgagtgtcgctttagccaattgc 39463457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 39698857 - 39698827
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  39698857 tccgtttcaaaatgagtgtcgttttagccaa 39698827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 396142 - 396170
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttag 233  Q
    |||||||||||||||||||||||||||||    
T  396142 catccgtttcaaaatgagtgtcgttttag 396170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 4760476 - 4760512
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  4760476 catccgttttaaaatgagtgtcgctttagccaattgc 4760512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 8382404 - 8382440
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  8382404 catccgttttaaaatgagtgtcgttttagctaattgc 8382440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 8471490 - 8471458
Alignment:
Q  209 cgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||| |||||||||||||    
T  8471490 cgtttcaaaatgagtgtcgctttagccaattgc 8471458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 27109737 - 27109765
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttag 233  Q
    |||||||||||||||||||||||||||||    
T  27109737 catccgtttcaaaatgagtgtcgttttag 27109765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 34168131 - 34168163
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaatt 239  Q
    ||||||||||||||||||||| |||||||||||    
T  34168131 tccgtttcaaaatgagtgtcgctttagccaatt 34168163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 41790057 - 41790093
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||| | |||||||||||||||||||    
T  41790057 catccgtttcaaaataaatgtcgttttagccaattgc 41790093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 45889796 - 45889761
Alignment:
Q  206 atccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  45889796 atccgtttcaaaatgagtgtcgttttagccaattgc 45889761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 37654644 - 37654610
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||||||||||||||||    
T  37654644 tccgtttcaaaatgagtgtcgttttagccaattgc 37654610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 2493338 - 2493302
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||||||| |||||||||    
T  2493338 catccgtttcaaaatgagtgtcgtttttgccaattgc 2493302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 2728319 - 2728355
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2728319 catccgtttcaaaatgagtgtcgctttagccaattgc 2728355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 6462248 - 6462212
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||| ||||||||||||||||||    
T  6462248 catccgtttcaaaatgagggtcgttttagccaattgc 6462212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 32140796 - 32140832
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||||||||| |||||||    
T  32140796 catccgtttcaaaatgagtgtcgttttagtcaattgc 32140832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 54042103 - 54042139
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||| |||||||||||||||||||||||||||    
T  54042103 catccgttttaaaatgagtgtcgttttagccaattgc 54042139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 29519445 - 29519480
Alignment:
Q  204 tcatccgtttcaaaatgagtgtcgttttagccaatt 239  Q
    |||||||||| |||||||||||||||||||||||||    
T  29519445 tcatccgttttaaaatgagtgtcgttttagccaatt 29519480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 24941114 - 24941080
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||||||| ||||||||    
T  24941114 tccgtttcaaaatgagtgtcgttttaaccaattgc 24941080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 29840285 - 29840251
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||||||| ||||||||    
T  29840285 tccgtttcaaaatgagtgtcgttttacccaattgc 29840251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 30492950 - 30492916
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||| |||||||||||||||    
T  30492950 tccgtttcaaaatgagtgtggttttagccaattgc 30492916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 31941787 - 31941753
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  31941787 tccgtttcaaaatgagtgtcgctttagccaattgc 31941753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 34124527 - 34124493
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  34124527 tccgtttcaaaatgagtgtcgctttagccaattgc 34124493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 39985051 - 39985017
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  39985051 tccgtttcaaaatgagtgtcgctttagccaattgc 39985017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 47321377 - 47321343
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||| |||||||||||||||||||||||||||    
T  47321377 tccgttttaaaatgagtgtcgttttagccaattgc 47321343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 47817697 - 47817727
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  47817697 tccgtttcaaaatgagtgtcgttttagccaa 47817727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 52957713 - 52957747
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  52957713 tccgtttcaaaatgagtgtcgctttagccaattgc 52957747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 54234048 - 54234014
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  54234048 tccgtttcaaaatgagtgtcgctttagccaattgc 54234014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 22220290 - 22220319
Alignment:
Q  204 tcatccgtttcaaaatgagtgtcgttttag 233  Q
    ||||||||||||||||||||||||||||||    
T  22220290 tcatccgtttcaaaatgagtgtcgttttag 22220319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 27653911 - 27653874
Alignment:
Q  204 tcatccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  27653911 tcatctgtttcaaaatgagtgtcgctttagccaattgc 27653874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 40010793 - 40010821
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttag 233  Q
    |||||||||||||||||||||||||||||    
T  40010793 catccgtttcaaaatgagtgtcgttttag 40010821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 55126731 - 55126695
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  55126731 catccgttttaaaatgaatgtcgttttagccaattgc 55126695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 40299072 - 40299038
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||||||||||||||||    
T  40299072 tccgtttcaaaatgagtgtcgttttagccaattgc 40299038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 33056200 - 33056237
Alignment:
Q  204 tcatccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||||||||||| |||||||    
T  33056200 tcatccgtttcaaaatgagtgtcgttttagtcaattgc 33056237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 32346030 - 32345998
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||||    
T  32346030 catccgtttcaaaatgagtgtcgttttagccaa 32345998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 7795158 - 7795193
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattg 240  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7795158 catccgtttcaaaatgagtgtcgctttagccaattg 7795193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 241
Target Start/End: Complemental strand, 22298232 - 22298201
Alignment:
Q  210 gtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||||||||||||    
T  22298232 gtttcaaaatgagtgtcgttttagccaattgc 22298201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 1742225 - 1742191
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  1742225 tccgtttcaaaatgagtgtcgctttagccaattgc 1742191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 19906648 - 19906614
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  19906648 tccgtttcaaaatgagtgtcgctttagccaattgc 19906614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 32345753 - 32345787
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  32345753 tccgtttcaaaatgagtgtcgctttagccaattgc 32345787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 37815958 - 37815924
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||| |||||||||||||||||||||||||||    
T  37815958 tccgttttaaaatgagtgtcgttttagccaattgc 37815924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 44453367 - 44453333
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||| |||||||||||||||||||||||||||    
T  44453367 tccgttttaaaatgagtgtcgttttagccaattgc 44453333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 715789 - 715818
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagc 234  Q
    ||||||||||||||||||||||||||||||    
T  715789 catccgtttcaaaatgagtgtcgttttagc 715818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 18270804 - 18270775
Alignment:
Q  204 tcatccgtttcaaaatgagtgtcgttttag 233  Q
    ||||||||||||||||||||||||||||||    
T  18270804 tcatccgtttcaaaatgagtgtcgttttag 18270775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 36836306 - 36836273
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattg 240  Q
    ||||||||||||| ||||||||||||||||||||    
T  36836306 tccgtttcaaaatcagtgtcgttttagccaattg 36836273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 37502279 - 37502308
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagc 234  Q
    ||||||||||||||||||||||||||||||    
T  37502279 catccgtttcaaaatgagtgtcgttttagc 37502308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 45500016 - 45499987
Alignment:
Q  208 ccgtttcaaaatgagtgtcgttttagccaa 237  Q
    ||||||||||||||||||||||||||||||    
T  45500016 ccgtttcaaaatgagtgtcgttttagccaa 45499987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 1741953 - 1741981
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagcc 235  Q
    |||||||||||||||||||||||||||||    
T  1741953 tccgtttcaaaatgagtgtcgttttagcc 1741981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 5723222 - 5723186
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  5723222 catccgttttaaaatgagtgtcgttttagtcaattgc 5723186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 27936003 - 27935971
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaa 237  Q
    ||||||||||||||||||||||| |||||||||    
T  27936003 catccgtttcaaaatgagtgtcgctttagccaa 27935971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 40207304 - 40207340
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| | |||||||||||||    
T  40207304 catccgtttcaaaatgagtgttgctttagccaattgc 40207340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 44648329 - 44648363
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||||||||||||||||    
T  44648329 tccgtttcaaaatgagtgtcgttttagccaattgc 44648363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 16240803 - 16240767
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||||||||||| |||||    
T  16240803 catccgtttcaaaatgagtgtcgttttagcctattgc 16240767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 38016335 - 38016367
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||||    
T  38016335 catccgtttcaaaatgagtgtcgttttagccaa 38016367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 42791532 - 42791496
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||| ||||||||||||||    
T  42791532 catccgtttcaaaatgagtgtcattttagccaattgc 42791496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 43736788 - 43736824
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||| |||||||||||||    
T  43736788 catccgtttcaaaatgagtgtcgctttagccaattgc 43736824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 44854549 - 44854513
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||| |||||||||||||||||||    
T  44854549 catccgtttcaaaatgattgtcgttttagccaattgc 44854513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 2988527 - 2988561
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  2988527 tccgtttcaaaatgagtgtcgctttagccaattgc 2988561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 4392129 - 4392095
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||||| |||||||||    
T  4392129 tccgtttcaaaatgagtgtcgttttggccaattgc 4392095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 20512687 - 20512657
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  20512687 tccgtttcaaaatgagtgtcgttttagccaa 20512657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 23525232 - 23525266
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||| ||||||||||||||||||||||||    
T  23525232 tccgtttcaatatgagtgtcgttttagccaattgc 23525266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 38364025 - 38363991
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||| |||||||||||||||||||||||||||    
T  38364025 tccgttttaaaatgagtgtcgttttagccaattgc 38363991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 51398244 - 51398210
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  51398244 tccgtttcaaaatgagtgtcgctttagccaattgc 51398210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 52222769 - 52222803
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||| |||||||||||||||||||||    
T  52222769 tccgtttcaaaattagtgtcgttttagccaattgc 52222803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 54261377 - 54261407
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  54261377 tccgtttcaaaatgagtgtcgttttagccaa 54261407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 44645299 - 44645328
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagc 234  Q
    ||||||||||||||||||||||||||||||    
T  44645299 catccgtttcaaaatgagtgtcgttttagc 44645328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 45567033 - 45566996
Alignment:
Q  204 tcatccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  45567033 tcatccgttttaaaatgagtgtcattttagccaattgc 45566996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 2567929 - 2567965
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  2567929 catccgttttaaaatgaatgtcgttttagccaattgc 2567965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 25061929 - 25061893
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  25061929 catccgtttaaaaatgagtgtcgttttagccgattgc 25061893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 30186409 - 30186377
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaatt 239  Q
    ||||||| |||||||||||||||||||||||||    
T  30186409 tccgttttaaaatgagtgtcgttttagccaatt 30186377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 31290893 - 31290925
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaatt 239  Q
    ||||||| |||||||||||||||||||||||||    
T  31290893 tccgttttaaaatgagtgtcgttttagccaatt 31290925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 36729686 - 36729722
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  36729686 catctgtttcaaaatgagcgtcgttttagccaattgc 36729722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 41287412 - 41287444
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaatt 239  Q
    ||||||||||||||||||||| |||||||||||    
T  41287412 tccgtttcaaaatgagtgtcgctttagccaatt 41287444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 44676455 - 44676423
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaatt 239  Q
    ||||||||||||||||||| |||||||||||||    
T  44676455 tccgtttcaaaatgagtgttgttttagccaatt 44676423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 51397969 - 51398001
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaa 237  Q
    ||||||||| |||||||||||||||||||||||    
T  51397969 catccgttttaaaatgagtgtcgttttagccaa 51398001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 54261651 - 54261619
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaatt 239  Q
    ||||||||||||||||||||| |||||||||||    
T  54261651 tccgtttcaaaatgagtgtcgctttagccaatt 54261619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 54933120 - 54933156
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  54933120 catccgttttaaaatgagtgtcgctttagccaattgc 54933156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 441150 - 441184
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||||||||||||||||    
T  441150 tccgtttcaaaatgagtgtcgttttagccaattgc 441184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 34225987 - 34225949
Alignment:
Q  203 ctcatccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  34225987 ctcatccgtttcaaaatgagtgtcgctttagccaattgc 34225949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 29396602 - 29396633
Alignment:
Q  210 gtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||||||||||||||    
T  29396602 gtttcaaaatgagtgtcgttttagccaattgc 29396633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 4132985 - 4133015
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  4132985 tccgtttcaaaatgagtgtcgttttagccaa 4133015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 4133256 - 4133222
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  4133256 tccgtttcaaaatgagtgtcgctttagccaattgc 4133222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 7743636 - 7743602
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaatt 239  Q
    ||||||||||||||||||||||| |||||||||||    
T  7743636 catccgtttcaaaatgagtgtcgctttagccaatt 7743602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 12342327 - 12342293
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||| |||||||||||||||||||||||||||    
T  12342327 tccgttttaaaatgagtgtcgttttagccaattgc 12342293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 43388576 - 43388610
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  43388576 tccgtttcaaaatgagtgtcgctttagccaattgc 43388610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 4840919 - 4840891
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttag 233  Q
    |||||||||||||||||||||||||||||    
T  4840919 catccgtttcaaaatgagtgtcgttttag 4840891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 13561952 - 13561984
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||| ||||||||||    
T  13561952 catccgtttcaaaatgagtgtcattttagccaa 13561984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 14698221 - 14698189
Alignment:
Q  209 cgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||| |||||||||||||    
T  14698221 cgtttcaaaatgagtgtcgctttagccaattgc 14698189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 25383402 - 25383438
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  25383402 catccgttttaaaatgagtgtcgctttagccaattgc 25383438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 29809049 - 29809013
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||| |||||||||||||||||| |||||||||||||    
T  29809049 catctgtttcaaaatgagtgtcgctttagccaattgc 29809013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 38982070 - 38982107
Alignment:
Q  204 tcatccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||| |||||||||||||||||||    
T  38982070 tcatccgtttcaaaatgaatgtcgttttagccaattgc 38982107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 14620688 - 14620656
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||||    
T  14620688 catccgtttcaaaatgagtgtcgttttagccaa 14620656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 21375842 - 21375812
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  21375842 tccgtttcaaaatgagtgtcgttttagccaa 21375812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 24436459 - 24436493
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||| |||||||||||||||||||||||||||    
T  24436459 tccgttttaaaatgagtgtcgttttagccaattgc 24436493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 42103982 - 42104016
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||||| |||||||||||||    
T  42103982 tccgtttcaaaatgagtgtcgctttagccaattgc 42104016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 42104256 - 42104226
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  42104256 tccgtttcaaaatgagtgtcgttttagccaa 42104226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 40330902 - 40330873
Alignment:
Q  208 ccgtttcaaaatgagtgtcgttttagccaa 237  Q
    ||||||||||||||||||||||||||||||    
T  40330902 ccgtttcaaaatgagtgtcgttttagccaa 40330873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 2729703 - 2729739
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  2729703 catccgtttcaaaatgattgtcgctttagccaattgc 2729739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 42661861 - 42661893
Alignment:
Q  209 cgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||||||||||||| |||||||||||||    
T  42661861 cgtttcaaaatgagtgtcgctttagccaattgc 42661893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 9579 - 9611
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaatt 239  Q
    |||||||||||||||||||||||||||||||||    
T  9579 tccgtttcaaaatgagtgtcgttttagccaatt 9611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 158325 - 158289
Alignment:
Q  204 tcatccgtttcaaaatgagtgtcgttttagccaattg 240  Q
    |||||||||| ||||||||||||||||||||||||||    
T  158325 tcatccgttttaaaatgagtgtcgttttagccaattg 158289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 70646 - 70616
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  70646 tccgtttcaaaatgagtgtcgttttagccaa 70616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 17246797 - 17246767
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  17246797 tccgtttcaaaatgagtgtcgttttagccaa 17246767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 29927169 - 29927199
Alignment:
Q  207 tccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||||||    
T  29927169 tccgtttcaaaatgagtgtcgttttagccaa 29927199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 234257 - 234225
Alignment:
Q  209 cgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    |||||||||||||||||||||||| ||||||||    
T  234257 cgtttcaaaatgagtgtcgttttaaccaattgc 234225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 24163630 - 24163666
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaattgc 241  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  24163630 catccgttttaaagtgagtgtcgttttagccaattgc 24163666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 32429245 - 32429277
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaa 237  Q
    ||||||||| |||||||||||||||||||||||    
T  32429245 catccgttttaaaatgagtgtcgttttagccaa 32429277  T

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Target: scaffold2107 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2107
Description:

Target: scaffold2107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 706 - 674
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaa 237  Q
    ||||||||||||||||| |||||||||||||||    
T  706 catccgtttcaaaatgaatgtcgttttagccaa 674  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 24934 - 24902
Alignment:
Q  205 catccgtttcaaaatgagtgtcgttttagccaa 237  Q
    |||||||||||||||||||||||||||| ||||    
T  24934 catccgtttcaaaatgagtgtcgttttatccaa 24902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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