View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10826_high_8 (Length: 225)
Name: NF10826_high_8
Description: NF10826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10826_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 36265951 - 36266016
Alignment:
| Q |
142 |
gcagcagaaccttcattatactacaccttaatcaaaacagcaaataatacaaaaaacattacataa |
207 |
Q |
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| T |
36265951 |
gcagcagaaccttcattatactacaccttaatcaaaacagcaaataatacaaaaaacattacataa |
36266016 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 36265824 - 36265887
Alignment:
| Q |
15 |
cacagattcaccagatgtggctattgtagccgaaccttcatttggatccacctaatcaaaacac |
78 |
Q |
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| T |
36265824 |
cacagattcaccagatgtggctattgtagccgaaccttcatttggatccacctaatcaaaacac |
36265887 |
T |
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