View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10826_high_9 (Length: 215)
Name: NF10826_high_9
Description: NF10826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10826_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 34958938 - 34958752
Alignment:
| Q |
13 |
cataggagaatcacactgatgaattttttcatcatcattcaagcaatggaagaaatcatgcagtggcagattt-atctcccgtggccgcagtagccgagg |
111 |
Q |
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| T |
34958938 |
cataggagaatcacactaatgaattttttcatcatcattccagcaatggaagatatcatgcagtggcagattttatctcccgtggccgcagtagccgagg |
34958839 |
T |
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| Q |
112 |
cacgcttagcttcataatctttaacagctgcttttatagcatcctaatgcaagcatgctgcagtgaagcttaactggtgggaggttaa |
199 |
Q |
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| T |
34958838 |
cacgcttagcttcataatctttaacagctgcttttatagcatcctca-gcaagcatgctgcagtgaagcttaactggtgggaggttaa |
34958752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 34954678 - 34954502
Alignment:
| Q |
17 |
ggagaatcacactgatgaattttttcatcatcattcaagcaatggaagaaatcatgcagtggcagatttatctcccgtggccgcagtagccgaggcacgc |
116 |
Q |
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||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
34954678 |
ggagaatcatactaatgaattttttcatcatcattccagcaatggaagaaatcatgcagtggcagatttgtctcctgtggccgcagtagccgaggcacgc |
34954579 |
T |
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| Q |
117 |
ttagcttcataatctttaacagctgcttttatagcatcctaatgcaagcatgctgcagtgaagcttaactggtgggag |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |
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| T |
34954578 |
ttagcttcataatctttaacagctgcttttatagcatcctca-gcaagcatgctgcagtgaagcttaactggcgggag |
34954502 |
T |
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