View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10826_low_1 (Length: 383)
Name: NF10826_low_1
Description: NF10826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10826_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 95 - 362
Target Start/End: Original strand, 879950 - 880217
Alignment:
| Q |
95 |
gaattattcgattaagatcagacatttatcgaattgtcgactacatagacaaacaactttcaaactatactaattgttactattgaagattattatcatt |
194 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
879950 |
gaattattcgattaagatcagacgattatcgaattgtcgactacatagacaaccaactttcaaactatactaattgttactattgaggattattatcatt |
880049 |
T |
|
| Q |
195 |
atgattgtcaccttgccaactccaaacaatatctttgagtgaaggtctcaattgttcctcacacatcttaacatactccaatgtgtctccaccacactta |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
880050 |
atgattgtcaccttgccaactccaaacaatatctttgagtgaaggtctcaattgttcctcacacatcttaacatactccaatgtgtctccaccacactta |
880149 |
T |
|
| Q |
295 |
gaaaactcaaccactgccacctccggcgccacctcaaatacctccattgtcatcgcgacctttccctt |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
880150 |
gaaaactcaaccactgccacctccggcgccacctcaaatacctccattgtcatcgctacctttccctt |
880217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 879881 - 879973
Alignment:
| Q |
1 |
ctactaatgataggatagctcatactttaagttggatacatcaaatat-nnnnnnnttattagaaatttgaattattcaattaagatcagacg |
92 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
879881 |
ctactaatgataggatagctcatacttgtacttggatacatcaaatataaaaaaaattattagaaatttgaattattcgattaagatcagacg |
879973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 45267548 - 45267686
Alignment:
| Q |
202 |
tcaccttgccaactccaaacaatatctttgagtgaaggtctcaattgttcctcacacatcttaacatactccaatgtgtctccaccacacttagaaaact |
301 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| |||||||| | || || ||||| | ||| |||||||| | |||||||||| | |||||||||||| |
|
|
| T |
45267548 |
tcaccctgccagctccacacaatgtctttgagagaaggtctaacttcatcttcacagaactttacatactcaagtgtgtctccagctgacttagaaaact |
45267647 |
T |
|
| Q |
302 |
caaccactgccacctccggcgccacctcaaatacctcca |
340 |
Q |
| |
|
| ||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
45267648 |
ctaccactgccacctccggtgcgacctcaaacacctcca |
45267686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University