View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10826_low_10 (Length: 239)

Name: NF10826_low_10
Description: NF10826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10826_low_10
NF10826_low_10
[»] chr2 (2 HSPs)
chr2 (11-223)||(42443891-42444105)
chr2 (181-223)||(10589589-10589631)
[»] chr4 (4 HSPs)
chr4 (64-218)||(48583607-48583763)
chr4 (62-223)||(2359993-2360155)
chr4 (132-223)||(6020250-6020341)
chr4 (132-174)||(7247351-7247393)
[»] chr8 (2 HSPs)
chr8 (52-162)||(36105856-36105968)
chr8 (182-223)||(36105811-36105852)
[»] scaffold0471 (2 HSPs)
scaffold0471 (52-162)||(3973-4086)
scaffold0471 (182-223)||(3928-3969)
[»] chr7 (2 HSPs)
chr7 (132-174)||(12308166-12308208)
chr7 (132-174)||(43681994-43682036)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 42443891 - 42444105
Alignment:
Q  11 aggatgcggcaaaa-aatatcatatatactatatataaagaaaggaaaatgctgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagttttt 109  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42443891 aggatgcggcaaaaaaatatcatatatactatatataaagaaaggaaaatgctgaaatacacgacaatttttgtcgtgtaatttgcacgaacaagttttt 42443990  T
Q  110 aactacgatttacta-nnnnnnnaatttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatt 208  Q
    ||||||||||| |||        ||||||||| ||||||||||||||||||||||| | ||||||||||||  |||||||||||||||||||||||||||    
T  42443991 aactacgatttcctattttttttaatttggatccaacagaaaatgacaaatcttgcctctgctgtatattttctatgagaaatcatacaaacatctcatt 42444090  T
Q  209 tggtggtctatatat 223  Q
     ||||||||||||||    
T  42444091 cggtggtctatatat 42444105  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 10589631 - 10589589
Alignment:
Q  181 ttatgagaaatcatacaaacatctcatttggtggtctatatat 223  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||    
T  10589631 ttatgagaaatcataaaaacatctcatttgatggtctaaatat 10589589  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 48583607 - 48583763
Alignment:
Q  64 aaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnn--aatttggattcaacagaaaatgacaaatct 161  Q
    ||||||||| |||| |||||||||||||||||||||||| |||| ||||||  |||| |||         ||||||||||||| | ||||||| |||| |    
T  48583607 aaatacacgacaatgtttgtcgtgtaatttgcacgaacatgtttgtaactatcatttgctatctttttttaatttggattcaatataaaatgataaattt 48583706  T
Q  162 tgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtcta 218  Q
    ||| ||||||||||||||  |||||||||||||| |||||||| |||||||||||||    
T  48583707 tgcttgtgctgtatattttctatgagaaatcataaaaacatcttatttggtggtcta 48583763  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 223
Target Start/End: Complemental strand, 2360155 - 2359993
Alignment:
Q  62 tgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnn-aatttggattcaacagaaaatgacaaatc 160  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||  |||||| ||| |||         ||||||||||||||||||||||||||||     
T  2360155 tgaaatacacgacaatgtttgttgtgtaatttgcacgaacaagtttaaaactaccattaacttttttttttaatttggattcaacagaaaatgacaaatt 2360056  T
Q  161 ttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatat 223  Q
    | || ||| ||||| ||||| | |||||||||||| |||||||||||| |||| |||| ||||    
T  2360055 tggcttgtcctgtaaatttcctttgagaaatcataaaaacatctcattcggtgctctaaatat 2359993  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 6020341 - 6020250
Alignment:
Q  132 aatttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatat 223  Q
    ||||| ||||||| |||||||||||||| |||| ||||||||||||||| ||||||||| |||| ||| |||||||| ||||||||||||||    
T  6020341 aatttagattcaatagaaaatgacaaattttgcttgtgctgtatatttcctatgagaaaacataaaaaaatctcattcggtggtctatatat 6020250  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 7247393 - 7247351
Alignment:
Q  132 aatttggattcaacagaaaatgacaaatcttgcatgtgctgta 174  Q
    ||||||||||||| |||||||||||||| |||| |||||||||    
T  7247393 aatttggattcaatagaaaatgacaaattttgcttgtgctgta 7247351  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 36105968 - 36105856
Alignment:
Q  52 aggaaaatgctgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttacta--nnnnnnnaatttggattcaacagaa 149  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||         ||||| ||||||||||||    
T  36105968 aggaaaatgttgaaatacacgacaatttttgtcgtgtaatttgcacaaacaaatttttaactacgatttattattattttttaatttagattcaacagaa 36105869  T
Q  150 aatgacaaatctt 162  Q
    |||||||||||||    
T  36105868 aatgacaaatctt 36105856  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 36105852 - 36105811
Alignment:
Q  182 tatgagaaatcatacaaacatctcatttggtggtctatatat 223  Q
    |||||||||| |||||||||||| ||| ||||||||||||||    
T  36105852 tatgagaaattatacaaacatcttattcggtggtctatatat 36105811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 4086 - 3973
Alignment:
Q  52 aggaaaatgctgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgat---ttactannnnnnnaatttggattcaacaga 148  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||   ||| ||       ||||| |||||||||||    
T  4086 aggaaaatgttgaaatacacgacaatttttgtcgtgtaatttgcacaaacaaatttttaactacgatttattattatttttttaatttagattcaacaga 3987  T
Q  149 aaatgacaaatctt 162  Q
    ||||||||||||||    
T  3986 aaatgacaaatctt 3973  T

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Target: scaffold0471; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 3969 - 3928
Alignment:
Q  182 tatgagaaatcatacaaacatctcatttggtggtctatatat 223  Q
    |||||||||| |||||||||||| ||| ||||||||||||||    
T  3969 tatgagaaattatacaaacatcttattcggtggtctatatat 3928  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 12308166 - 12308208
Alignment:
Q  132 aatttggattcaacagaaaatgacaaatcttgcatgtgctgta 174  Q
    ||||||||||||| |||||||||||||| |||| |||||||||    
T  12308166 aatttggattcaatagaaaatgacaaattttgcttgtgctgta 12308208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 43681994 - 43682036
Alignment:
Q  132 aatttggattcaacagaaaatgacaaatcttgcatgtgctgta 174  Q
    ||||||||||||| |||||||||||||| |||| |||||||||    
T  43681994 aatttggattcaatagaaaatgacaaattttgcttgtgctgta 43682036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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