View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10826_low_2 (Length: 356)

Name: NF10826_low_2
Description: NF10826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10826_low_2
NF10826_low_2
[»] chr2 (9 HSPs)
chr2 (11-340)||(42370805-42371145)
chr2 (185-256)||(8536827-8536898)
chr2 (186-256)||(42369680-42369750)
chr2 (184-248)||(8536172-8536236)
chr2 (160-248)||(4975703-4975795)
chr2 (160-248)||(4993611-4993703)
chr2 (188-256)||(4976446-4976514)
chr2 (188-256)||(4994353-4994421)
chr2 (184-256)||(41519866-41519938)
[»] chr8 (10 HSPs)
chr8 (184-256)||(33801534-33801606)
chr8 (184-256)||(38686338-38686410)
chr8 (184-248)||(33802322-33802386)
chr8 (188-248)||(38687004-38687064)
chr8 (184-248)||(39257669-39257733)
chr8 (184-248)||(43971313-43971377)
chr8 (184-255)||(12350596-12350667)
chr8 (184-255)||(43924960-43925031)
chr8 (188-255)||(43972028-43972095)
chr8 (184-256)||(43924525-43924597)
[»] chr7 (2 HSPs)
chr7 (184-256)||(46757459-46757531)
chr7 (184-244)||(12732282-12732342)
[»] chr4 (9 HSPs)
chr4 (193-256)||(53665027-53665090)
chr4 (184-256)||(50710358-50710430)
chr4 (184-248)||(53664247-53664311)
chr4 (180-243)||(6680296-6680359)
chr4 (196-256)||(50709706-50709766)
chr4 (184-248)||(6246819-6246883)
chr4 (184-255)||(10421523-10421594)
chr4 (180-255)||(6247412-6247488)
chr4 (203-255)||(10420971-10421023)
[»] scaffold0189 (1 HSPs)
scaffold0189 (184-255)||(12801-12872)
[»] chr5 (2 HSPs)
chr5 (184-255)||(4554692-4554763)
chr5 (185-256)||(4555330-4555401)
[»] chr1 (6 HSPs)
chr1 (184-255)||(11469116-11469187)
chr1 (184-255)||(14925284-14925355)
chr1 (184-255)||(14924709-14924780)
chr1 (160-248)||(31787485-31787577)
chr1 (184-255)||(31788218-31788289)
chr1 (203-255)||(11469707-11469759)
[»] scaffold0071 (1 HSPs)
scaffold0071 (184-242)||(11873-11931)
[»] chr3 (3 HSPs)
chr3 (184-242)||(15450260-15450318)
chr3 (184-255)||(38337419-38337490)
chr3 (184-243)||(55124449-55124508)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 42371145 - 42370805
Alignment:
Q  11 cataggaatgtaagtctaaaacagatcctacagt-----tcaaaaacaattttattcggacacactacttgtgaagtaaaatacaggaagttaaaagatg 105  Q
    |||| |||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42371145 cataagaatgtaagtctaaaacagatcctacagtgcagttcaaaaacaattttattcggacacactacttgtgaaataaaatacaggaagttaaaagatg 42371046  T
Q  106 attgctaaatgttagttttgtacttgtaccaaataaaacacgattgtttcgtactttagtatgggaatggaaag----ttctcaccatgggaaagtaaat 201  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||||||||||||||    
T  42371045 attgctaaatgtttgttttgtacttgtaccaaataaaacacgattgtttcgtactttagtatgggaatggaaagttgtttcccaccatgggaaagtaaat 42370946  T
Q  202 attgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaannnnnnnnccataaactatcttctccgtaccccact--caccaac 299  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||||||||||||        |||||||||||||||||||| |||||||  |||||||    
T  42370945 attggccattagataaagtggagaatatagttttatcatagacactcgacaccaaatttttttccataaactatcttctccgtgccccactcacaccaac 42370846  T
Q  300 cactagttgtcccaactttgcttgcttcttcctctccttct 340  Q
    || ||| ||||||||||||||||||||||||||||||||||    
T  42370845 cattagctgtcccaactttgcttgcttcttcctctccttct 42370805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 8536898 - 8536827
Alignment:
Q  185 accatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    ||||||| ||||||||| |||||||||| ||||||| |||||||| |||||||||||||||||| |||||||    
T  8536898 accatggaaaagtaaatgttgaccattagataaagtagagaacatggttttatcatagacactcaacaccaa 8536827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 42369680 - 42369750
Alignment:
Q  186 ccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    |||||||||||||||||||  |||||| ||||||| ||||||||| ||||||||||||||||| |||||||    
T  42369680 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatcatagacactcaacaccaa 42369750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 8536172 - 8536236
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactc 248  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||||  |||||||||||||||||    
T  8536172 caccatgggaaagtaaatattgacgattagataaagtagagaacatgattttatcatagacactc 8536236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 4975703 - 4975795
Alignment:
Q  160 tttagtatgggaatggaaagttct----caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactc 248  Q
    |||||||||||||||| ||||| |    |||||||| ||||  ||| |||||||||||||||||| ||||||||| |||||||||||| ||||    
T  4975703 tttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactc 4975795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 4993611 - 4993703
Alignment:
Q  160 tttagtatgggaatggaaagttct----caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactc 248  Q
    |||||||||||||||| ||||| |    |||||||| ||||  ||| |||||||||||||||||| ||||||||| |||||||||||| ||||    
T  4993611 tttagtatgggaatgggaagttgttttccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactc 4993703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 4976514 - 4976446
Alignment:
Q  188 atgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    |||||||||| ||| || ||||||| ||||| | ||||||||| ||||| ||||||||||| |||||||    
T  4976514 atgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaa 4976446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 4994421 - 4994353
Alignment:
Q  188 atgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    |||||||||| ||| || ||||||| ||||| | ||||||||| ||||| ||||||||||| |||||||    
T  4994421 atgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaa 4994353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 41519938 - 41519866
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    ||||||||||||||   | |||||| ||||||||||| ||||||||| ||||| ||||||||| | |||||||    
T  41519938 caccatgggaaagttttttttgaccgttaaataaagtagagaacatacttttaccatagacacccaacaccaa 41519866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 33801534 - 33801606
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  33801534 caccatggaaaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactcaacaccaa 33801606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 38686338 - 38686410
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| |||||||    
T  38686338 caccatgggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactcaacaccaa 38686410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 33802386 - 33802322
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactc 248  Q
    ||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  33802386 caccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactc 33802322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 38687064 - 38687004
Alignment:
Q  188 atgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactc 248  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||  |||||||||||||||||    
T  38687064 atgggaaagtaaatattgatcattagataaagtagagaacatgattttatcatagacactc 38687004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 39257669 - 39257733
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactc 248  Q
    |||||||||||||  ||| |||||||||||||||||| ||||||||| |||||||||||| ||||    
T  39257669 caccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactc 39257733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 43971313 - 43971377
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactc 248  Q
    |||||||||||||  ||| |||||||||||||||||| ||||||||| |||||||||||| ||||    
T  43971313 caccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactc 43971377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 12350667 - 12350596
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    ||||||||||||   ||| |||||||||| |||| || ||||||||| ||||||||||||||||| ||||||    
T  12350667 caccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 12350596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 43925031 - 43924960
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    ||||||| |||||| ||| |||||| ||| || || | ||||||||| ||||||||||||||||| ||||||    
T  43925031 caccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacacca 43924960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 43972095 - 43972028
Alignment:
Q  188 atgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    |||||||||| ||| || ||||||| ||||| | ||||||||| ||||| ||||||||||| ||||||    
T  43972095 atgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 43972028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 43924525 - 43924597
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    |||||||||||||  ||| |||||| ||| || || | ||||||||| |||||||||| |||||| |||||||    
T  43924525 caccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactcaacaccaa 43924597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 46757459 - 46757531
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||    
T  46757459 caccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaacaccaa 46757531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 12732282 - 12732342
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagac 244  Q
    ||||||||||||||||||||||||||||| || | ||  ||||||||||||||||||||||    
T  12732282 caccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagac 12732342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 53665090 - 53665027
Alignment:
Q  193 aaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  53665090 aaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactcaacaccaa 53665027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 50710430 - 50710358
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||   |||||||||||||||| |||||||    
T  50710430 caccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatcatagacactcaacaccaa 50710358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 53664247 - 53664311
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactc 248  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||    
T  53664247 caccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactc 53664311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 6680359 - 6680296
Alignment:
Q  180 ttctcaccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcataga 243  Q
    ||||||||||||||||||||||||||||||||| || ||||  |||||||||||||||||||||    
T  6680359 ttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatcataga 6680296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 50709706 - 50709766
Alignment:
Q  196 gtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    |||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  50709706 gtaaatattgactattagataaagtagagaacatagttttatcatagacactcaacaccaa 50709766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 6246819 - 6246883
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactc 248  Q
    |||||||||||||| ||| |||||||||| |||| || ||||||||| |||||||||||||||||    
T  6246819 caccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactc 6246883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 10421594 - 10421523
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    |||||||||||||  ||| |||||| ||| || || | ||||||||| ||||||||||||||||| ||||||    
T  10421594 caccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacacca 10421523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 6247488 - 6247412
Alignment:
Q  180 ttctcaccatgggaaagtaaatattgaccattaaataaagtggagaacatagtttt-atcatagacactcgacacca 255  Q
    |||||| |||||||||   ||| |||| ||||| ||||||| ||||||||| |||| ||||||||||||| ||||||    
T  6247488 ttctcatcatgggaaaactaattttgatcattagataaagtagagaacatactttttatcatagacactcaacacca 6247412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 10420971 - 10421023
Alignment:
Q  203 ttgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    |||||||||| ||||| | || |||||| ||||||||||||||||| ||||||    
T  10420971 ttgaccattagataaactagataacatacttttatcatagacactcaacacca 10421023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 12872 - 12801
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    |||||||||||||| ||| |||||||||| ||||| | ||||||||| ||||||||||||||||| ||||||    
T  12872 caccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaacacca 12801  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 4554692 - 4554763
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    ||||||| |||||  ||| |||||||||| ||||||| ||||||||| ||||||||||||||||| ||||||    
T  4554692 caccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacactcaacacca 4554763  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 4555401 - 4555330
Alignment:
Q  185 accatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacaccaa 256  Q
    ||||||||||||  ||| |||| | ||  ||||||||||||||||| ||||||| ||||||||| |||||||    
T  4555401 accatgggaaagctaattttgaacgttggataaagtggagaacatacttttatcgtagacactcaacaccaa 4555330  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 11469116 - 11469187
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    |||||||||||||  ||| |||||||||| |||| || ||||||||| ||||||||||||||||| ||||||    
T  11469116 caccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 11469187  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 14925355 - 14925284
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    |||||||||||||  ||| |||||||||| ||||| | ||||||||| ||||||||||||||||| ||||||    
T  14925355 caccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactcaacacca 14925284  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 14924709 - 14924780
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    |||||||||||||  ||| |||||| |||||| || | ||||||||| ||||||||||||||||| ||||||    
T  14924709 caccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactcaacacca 14924780  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 31787485 - 31787577
Alignment:
Q  160 tttagtatgggaatggaaagttct----caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactc 248  Q
    |||||||||||||||| ||||| |    |||||||| ||||  ||| |||||||||| ||||||| ||||||||| |||||||||||| ||||    
T  31787485 tttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattagataaagtagagaacatacttttatcatagagactc 31787577  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 31788289 - 31788218
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    |||||||||||||| ||| || ||||||| ||||| | ||||||||| ||||| ||||||||||| ||||||    
T  31788289 caccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 31788218  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 11469759 - 11469707
Alignment:
Q  203 ttgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    |||||||||| ||||||| ||||||||| |||||||||||||| || ||||||    
T  11469759 ttgaccattagataaagtagagaacatacttttatcatagacattcaacacca 11469707  T

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Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 11931 - 11873
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatag 242  Q
    |||||||||||||| ||| |||||||||| || |||| ||||||||| |||||||||||    
T  11931 caccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 11873  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 15450260 - 15450318
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatag 242  Q
    |||||||||||||| ||| |||||||||| || |||| ||||||||| |||||||||||    
T  15450260 caccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 15450318  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 38337490 - 38337419
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcatagacactcgacacca 255  Q
    |||||||||||||  ||| |||||| ||| || || | ||||||||| ||||||||||||||||| ||||||    
T  38337490 caccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacacca 38337419  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 55124449 - 55124508
Alignment:
Q  184 caccatgggaaagtaaatattgaccattaaataaagtggagaacatagttttatcataga 243  Q
    |||||||||||| ||||||||||| |||| || | ||  |||||||||||||||||||||    
T  55124449 caccatgggaaaataaatattgactattagatcatgtaaagaacatagttttatcataga 55124508  T

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