View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10826_low_7 (Length: 275)

Name: NF10826_low_7
Description: NF10826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10826_low_7
NF10826_low_7
[»] chr8 (1 HSPs)
chr8 (1-257)||(39439403-39439662)
[»] chr3 (1 HSPs)
chr3 (2-90)||(20132526-20132613)
[»] chr6 (1 HSPs)
chr6 (24-90)||(2878223-2878289)
[»] chr1 (2 HSPs)
chr1 (2-85)||(14796730-14796812)
chr1 (2-85)||(14805604-14805686)
[»] scaffold0049 (1 HSPs)
scaffold0049 (24-90)||(40514-40580)
[»] chr4 (1 HSPs)
chr4 (24-90)||(9346381-9346447)
[»] chr7 (1 HSPs)
chr7 (24-90)||(23690248-23690314)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 39439403 - 39439662
Alignment:
Q  1 gataataaataagagtgacttgaaaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaacgacatcaaac 100  Q
    |||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39439403 gataataaataagaatgacttgaaaaaggctcggagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagaggacgacatcaaac 39439502  T
Q  101 tctagggaaatagtattcaaacgtgaatacacatatatgaacgaccaattgtttgattagattttataagaaaacccccaatttcttgtattaagtacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39439503 tctagggaaatagtattcaaacgtgaatacacatatatgaacgaccaattgtttgattagattttataagaaaacccccaatttcttgtattaagtacat 39439602  T
Q  201 aaattt---atcacataattgaatttaacataggaaaatccccacataattggaagatgg 257  Q
    ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39439603 aaatttatcatcacataattgaatttaacataggaaaatccccacataattggaagatgg 39439662  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 20132613 - 20132526
Alignment:
Q  2 ataataaataagagtgacttgaaaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaac 90  Q
    |||||||||||||||| |||||||| ||| | ||||||||||||| |||||||||||| ||| | || |||||||||| ||||||||||    
T  20132613 ataataaataagagtggcttgaaaagggt-cggagtaccaaacaagtgtctcgtgtgtatgacattatgatcaatagtctgtagagaac 20132526  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 2878289 - 2878223
Alignment:
Q  24 aaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaac 90  Q
    |||||| |||||||||||||||| || ||||||||| ||| ||||||| ||||||| ||||||||||    
T  2878289 aaaaggctcagagtaccaaacaaatgcctcgtgtgtatgaaaatacgaccaatagtctgtagagaac 2878223  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 14796812 - 14796730
Alignment:
Q  2 ataataaataagagtgacttgaaaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtag 85  Q
    ||||||||||||  ||||||||||| | | || |||| ||||||| |||||||||||| ||||||||||| ||||||| |||||    
T  14796812 ataataaataaggatgacttgaaaacgct-caaagtatcaaacaagtgtctcgtgtgtatgataatacgaccaatagtgtgtag 14796730  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 14805686 - 14805604
Alignment:
Q  2 ataataaataagagtgacttgaaaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtag 85  Q
    ||||||||||||  ||||||||||| | | || |||| ||||||| |||||||||||| ||||||||||| ||||||| |||||    
T  14805686 ataataaataaggatgacttgaaaacgct-caaagtatcaaacaagtgtctcgtgtgtatgataatacgaccaatagtgtgtag 14805604  T

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Target: scaffold0049 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 40514 - 40580
Alignment:
Q  24 aaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaac 90  Q
    |||||| |||||||||||||||| || ||||||||| ||| ||||||  ||||||| ||||||||||    
T  40514 aaaaggctcagagtaccaaacaagtgcctcgtgtgtatgaaaatacggccaatagtctgtagagaac 40580  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 9346381 - 9346447
Alignment:
Q  24 aaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaac 90  Q
    |||||| |||||||||||||||| || ||||||||| ||| ||||||| ||||||  ||||||||||    
T  9346381 aaaaggctcagagtaccaaacaagtgcctcgtgtgtatgacaatacgaccaatagactgtagagaac 9346447  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 23690248 - 23690314
Alignment:
Q  24 aaaaggttcagagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagagaac 90  Q
    |||||| |||||||||||||||| || || |||||| ||| |||| || ||||||| ||||||||||    
T  23690248 aaaaggctcagagtaccaaacaagtgcctggtgtgtatgaaaatatgaccaatagtctgtagagaac 23690314  T

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