View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10827_high_1 (Length: 450)
Name: NF10827_high_1
Description: NF10827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10827_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 211 - 434
Target Start/End: Complemental strand, 1414177 - 1413954
Alignment:
| Q |
211 |
gttacttatatgcttgctagcttagcttgatcttctaatagcacatacaaattctatgacatgtgagggtttgtgtgtatagtttggtcaactaagagtt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414177 |
gttacttatatgcttgctagcttagcttgatcttctaatagcacatacaaattctatgacatgtgagggtttgtgtgtatagtttggtcaactaagagtt |
1414078 |
T |
|
| Q |
311 |
ttattctctccaatggaattctaaagggaatgtttttcttgaaaactattctttatcgtatttcttaagggattgagagtctctattattattctagtct |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414077 |
ttattctctccaatggaattctaaagggaatgtttttcttgaaaactattctttatcgtatttcttaagggattgagagtctctattattattctagtct |
1413978 |
T |
|
| Q |
411 |
tgtatacacactctttctctctcg |
434 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1413977 |
tgtatacacactctttctctctcg |
1413954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 1414373 - 1414204
Alignment:
| Q |
15 |
ctaagaacttgattttcttcaaattgaacaaaacccatttcatgaatagcttgaggggtatttgtgaatgaaacttggagatcataattgggaacatctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414373 |
ctaagaacttgattttcttcaaattgaacaaaacccatttcatgaatagcttgaggggtatttgtgaatgaaacttggagatcataattgggaacatctc |
1414274 |
T |
|
| Q |
115 |
tttctccttccatatcccnnnnnnnnatgaaataaaaatcctaaattggatttggaatatcttagctagc |
184 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414273 |
tttctccatccatatcccttttttttatgaaataaaaatcctaaattggatttggaatatcttagctagc |
1414204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University