View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10827_high_2 (Length: 445)
Name: NF10827_high_2
Description: NF10827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10827_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 20359360 - 20359773
Alignment:
| Q |
15 |
ggccagcgagtgaaggtttcatcgcaaatgtcgtcacatagaaaaatgttcgtacacagtaacctgttcatgaacttgtctgcttggccgtagaaaccag |
114 |
Q |
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| T |
20359360 |
ggccagcgagtgaaggtttcatcgcaaatgtcgtcacatagaaaaatgttcgtacacagtaacctgttcatgcacttgtctgcttggccgtagaaaccag |
20359459 |
T |
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| Q |
115 |
acagattcatctctttgttttttccattattattattgttcaaaaagattccttcacacacattaacaaacgtgtgaccatgtgtgacgcttattggaca |
214 |
Q |
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| T |
20359460 |
acagattcatctctttgttttttccattattattattgttcaaaaagattccttcacacacataaacaaacgtgtgaccatgtgtgacgcttattggaca |
20359559 |
T |
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| Q |
215 |
taaaaggagggaaataaaatagatgatgggcaaagagaaaacaattacgataaatgatagcatttggatgatacaataagatatctctttctgtataatc |
314 |
Q |
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| T |
20359560 |
taaaaggagggaaataaaatagatgatgggcaaagagaaaacaattacgataaacgatagcatttggatgatacgataagatatctctttctgtataatc |
20359659 |
T |
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| Q |
315 |
atatatttgagtttgaattcaatgtgagtatacaacattaataaatctttagagaaattattttaccacacactatgatttaatccgactaaaaatatta |
414 |
Q |
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| T |
20359660 |
atatatttgagttcgaattcaatattagtatacaacattaataaatctttagagaaattattttaccacacactatgatttaatccgactagaaatatta |
20359759 |
T |
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| Q |
415 |
gctttttacggttg |
428 |
Q |
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| T |
20359760 |
gctttttacggttg |
20359773 |
T |
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