View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10827_high_6 (Length: 224)
Name: NF10827_high_6
Description: NF10827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10827_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 46997609 - 46997403
Alignment:
| Q |
1 |
tacgcagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaactatgatgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46997609 |
tacgcagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaattatgatgata |
46997510 |
T |
|
| Q |
101 |
aagtggtgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46997509 |
aagtggtgcgaaactcggttgaagagtggttacgttcgccttttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcacc |
46997410 |
T |
|
| Q |
201 |
gaggttt |
207 |
Q |
| |
|
||||||| |
|
|
| T |
46997409 |
gaggttt |
46997403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 46974540 - 46974340
Alignment:
| Q |
7 |
gtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaactatgatgataaagtgg |
106 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||| ||| ||| ||||||||||||||| |
|
|
| T |
46974540 |
gtgagtgctgaaacgacggtaggggaattgctggagaatgatctaggatgggcagcatggaaaattcatctagctgttgtaaatcatgatgataaagtgg |
46974441 |
T |
|
| Q |
107 |
tgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcaccgaggtt |
206 |
Q |
| |
|
|||| | ||||||||||||||||| ||||| || ||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46974440 |
tgcgtaggtcggttgaagagtggtttcgttctccttttgtgtatcgaacagatttgttttttgatccttacactgtgatgatgggtagttcaccgaggtt |
46974341 |
T |
|
| Q |
207 |
t |
207 |
Q |
| |
|
| |
|
|
| T |
46974340 |
t |
46974340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 46980530 - 46980329
Alignment:
| Q |
6 |
agtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaactatgatgataaagtg |
105 |
Q |
| |
|
|||||| |||||||| |||||||| || |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||| |
|
|
| T |
46980530 |
agtgagtgctgaaacgacggtaggagagttgctggagaatgatctaggatgggcagcatggaaaattcatgtggctattgcaaatcacgatgataaagtg |
46980431 |
T |
|
| Q |
106 |
gtgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcaccgaggt |
205 |
Q |
| |
|
||||| | ||||||||| ||||||| ||||| || ||| |||||||||||||| |||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
46980430 |
gtgcgtaggtcggttgaaaagtggtttcgttctccttttttgtatcgaatggatttgttctttgatccttatactgtgatgataagtggttcaccgaggt |
46980331 |
T |
|
| Q |
206 |
tt |
207 |
Q |
| |
|
|| |
|
|
| T |
46980330 |
tt |
46980329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 47001260 - 47001066
Alignment:
| Q |
13 |
gctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaactatgatgataaagtggtgcgaa |
112 |
Q |
| |
|
||||||||||| |||||||| ||| | |||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| || |
|
|
| T |
47001260 |
gctgaaacaacagtaggggagttgttcaggaatgatttaggatgggcagcatggaagattcatctggctattgcgaatcatgatgataaagtggtgcaaa |
47001161 |
T |
|
| Q |
113 |
actcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcaccgaggttt |
207 |
Q |
| |
|
| | |||||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
47001160 |
attatgttgaagagtggatacgttctcctattgtgtatcgaatggatctgttctttgatccttatactgtgatgatgggtagctcaccaaggttt |
47001066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 46995349 - 46995143
Alignment:
| Q |
1 |
tacgcagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaactatgatgata |
100 |
Q |
| |
|
||||||||||| |||||||||| ||| || |||||||| |||| ||||||| |||| ||||||||||||| || ||||||||||| |||||| | | |
|
|
| T |
46995349 |
tacgcagtgagcactgaaacaacaaaaggtgagttgctggagaatggactaggattggcatcatggaagattcatctagctattgcaaaatatgatcaca |
46995250 |
T |
|
| Q |
101 |
aagtggtgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcacc |
200 |
Q |
| |
|
||| |||||| | | || ||||||||||| || || || | ||| ||||||||| |||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
46995249 |
gagttgtgcgacaattagtggaagagtggttgcggtctcctatagtggttcgaatggacatgttggttgatccttactctgtgatgatgggtagttcacc |
46995150 |
T |
|
| Q |
201 |
gaggttt |
207 |
Q |
| |
|
|||||| |
|
|
| T |
46995149 |
aaggttt |
46995143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 46951091 - 46951039
Alignment:
| Q |
17 |
aaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaag |
69 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
46951091 |
aaacaaccgtaggtgaattgctagaaaatgatttgggatgggcagcatggaag |
46951039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University