View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10827_low_1 (Length: 594)
Name: NF10827_low_1
Description: NF10827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10827_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 36 - 584
Target Start/End: Complemental strand, 36373962 - 36373416
Alignment:
| Q |
36 |
gaaagcaaatttcacagtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccatttcttcccatatgttagccaaatcatcagg |
135 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
36373962 |
gaaagcaaatttca--gtcacacacctcatttccatcaagaagataacttgatgtcaaagctgtttccatttcttcccacatgtcggccaaatcatcagg |
36373865 |
T |
|
| Q |
136 |
attttctacctcatcaccgctttccaatacgttttctttctcctgctcaaactgtctttcttcactgatagttggatcttcttcagttggtaggctatca |
235 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373864 |
attttctacctcatcacctttttccgatacgttttctttctcctgctcaaactgtctttcttcactgatagttggatcttcttcagttggtaggctatca |
36373765 |
T |
|
| Q |
236 |
aaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcctgttcttcatgatcatcgatactgtttg |
335 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36373764 |
aaattatccatgtaagcatcgattacttcctcacaggcatcagcatttaacattctaccgcctttatgatcctgttcttcatgatcatcgatactgtttg |
36373665 |
T |
|
| Q |
336 |
tcgttttcctttgaacaccttctttggattgtatagcttcccataaagttattaaacgcatatgctccttacacaaccgccttctcttaagcttctttgt |
435 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
36373664 |
tcgttttcttttgaacaccttctttggattgtatcgcttcccataaagttatcaaatccataagctccttacacaaccgccttctcttaaacttctttgt |
36373565 |
T |
|
| Q |
436 |
gcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcacatgataatggagactcattgtatggctcatgatttaacacatcaaca |
535 |
Q |
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| T |
36373564 |
gcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcacatgataatggagactcattgtatggctcatgatttaacacatcaaca |
36373465 |
T |
|
| Q |
536 |
gcgttctttcctttagcatcagtcaactgattttccttattaacctttg |
584 |
Q |
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| T |
36373464 |
gcgttctttcctttagcatcagtcaactgattttccttattaacctttg |
36373416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 32251531 - 32251652
Alignment:
| Q |
52 |
gtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccatttcttcccatatgttagccaaatcatcaggattttctacctcatca |
151 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||| | |||||||||||| | | | |||||||||||| ||||||| |||||||| |
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| T |
32251531 |
gtcacacaccgcagttccatcaagaagataacttgatgtcaaagctgtattcatttcttcccacaaggcatccaaatcatcagcattttcttcctcatca |
32251630 |
T |
|
| Q |
152 |
ccgctttccaatacgttttctt |
173 |
Q |
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|||||| | |||| ||||||| |
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| T |
32251631 |
tcgcttttcgatactttttctt |
32251652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 32251706 - 32251813
Alignment:
| Q |
212 |
tcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcctgtt |
311 |
Q |
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||||||||||||||||| ||||| ||||| | ||||||| ||| |||| ||||| | |||||||||||| || ||||||||| |||||||||| |||| |
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| T |
32251706 |
tcttcttcagttggtagactatcgaaattcttcatgtaactatctattatttccttgcgggcatcagcattgaatgttctaccgcctttatgatcttgtt |
32251805 |
T |
|
| Q |
312 |
cttcatga |
319 |
Q |
| |
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|||||||| |
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|
| T |
32251806 |
cttcatga |
32251813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 32229039 - 32229101
Alignment:
| Q |
52 |
gtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccatttcttccca |
114 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||||| |||||| |
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| T |
32229039 |
gtcacacacctcagttccatcaagaagataacttgatgtcgaagttgtatccatttattccca |
32229101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 8845911 - 8846017
Alignment:
| Q |
52 |
gtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccatttcttcccatatgttagccaaatcatcaggattttctacctcatca |
151 |
Q |
| |
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|||||| |||||| |||||||||||||| |||||| || || ||| || |||||||||||||| ||| || ||| ||||||||||||||| || ||||| |
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| T |
8845911 |
gtcacaaacctcagttccatcaagaagacaacttgctgccatagcagtatccatttcttcccaaatggcagacaagtcatcaggattttcttccccatca |
8846010 |
T |
|
| Q |
152 |
ccgcttt |
158 |
Q |
| |
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|||||| |
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| T |
8846011 |
tcgcttt |
8846017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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