View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10827_low_5 (Length: 412)
Name: NF10827_low_5
Description: NF10827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10827_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 8139218 - 8138835
Alignment:
| Q |
17 |
atgattaagatttatacttaatgatcaagaaacataaaaaactgagacatccatcattccaaagcatagattcatcatttatacaaaactgagacatcat |
116 |
Q |
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| T |
8139218 |
atgattaagatttatacttaatgatcaagaaacataaaaaactgagacatccatcattccaaagcatagattcatcatttatacaaaactgagacataat |
8139119 |
T |
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| Q |
117 |
tccaaagtcagccatgtattaactgatagtgcatacat-aaacaattagatgagagccacagaaactttagaactgttacggaagaataatttttcccat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139118 |
tccaaagtcagccatgtattaactgatagtgcatacataaaacaattagatgagagccacagaaactttagaactgttacggaagaataatttttcccat |
8139019 |
T |
|
| Q |
216 |
tannnnnnnncttagcattcgaaatagagatcaaatagttttaattttgatttattataatagattttgattttgatacatttacttaaaacggattgta |
315 |
Q |
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| T |
8139018 |
tattttttttcttagcattcgaaatagagatcaaatagttttaattttgatttattataatagattttgattttgatacatttacttaaaacggattgta |
8138919 |
T |
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| Q |
316 |
cgaaaaataaatttgatcataacaatttgactttcaaatcaagttgcaagttggcatatgaagacatgtgcatcccatccttct |
399 |
Q |
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| T |
8138918 |
cgaaaaataaatttgatcataacaatttgactttcaaatcaagttgcaagttggcatatgaagacatgtgcatccaatccttct |
8138835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 267 - 394
Target Start/End: Original strand, 7670694 - 7670824
Alignment:
| Q |
267 |
ttattataatagattttgattttgatacatttactt-aaaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgca |
363 |
Q |
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| T |
7670694 |
ttattataatagattttgattttgatacatttacttaaaaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgca |
7670793 |
T |
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| Q |
364 |
agttggcatatgaagacatgtgcatcccatc |
394 |
Q |
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| T |
7670794 |
agttggcatatgaaggcatgtgcatcccatc |
7670824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 267 - 394
Target Start/End: Original strand, 7708916 - 7709046
Alignment:
| Q |
267 |
ttattataatagattttgattttgatacatttactt-aaaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgca |
363 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
7708916 |
ttattataatagattttgattttgatacatttacttaaaaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgca |
7709015 |
T |
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| Q |
364 |
agttggcatatgaagacatgtgcatcccatc |
394 |
Q |
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| T |
7709016 |
agttggcatatgaaggcatgtgcatcccatc |
7709046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 7499722 - 7499845
Alignment:
| Q |
101 |
aaaactgagacatcattccaaagtcagccatgtattaactgatagtgcatacataaacaattaga-------tgagagccacagaaactttagaactgtt |
193 |
Q |
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|||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
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| T |
7499722 |
aaaactgagacatcattctaaaaccagccatgtattaacagatagtgcatatataaacaattagatcagacttcagagccacagaaactttagaactgtt |
7499821 |
T |
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| Q |
194 |
acggaagaataatttttcccatta |
217 |
Q |
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| T |
7499822 |
attgaagaataatttttcccatta |
7499845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 394
Target Start/End: Complemental strand, 7709614 - 7709522
Alignment:
| Q |
304 |
aaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgcaagttggcatatgaagacatgtgcatcccatc |
394 |
Q |
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| T |
7709614 |
aaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgcaagttggcatatgaaggcatgtgcatcccatc |
7709522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 7499685 - 7499735
Alignment:
| Q |
17 |
atgattaagatttatacttaatgatcaagaaacataaaaaactgagacatc |
67 |
Q |
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||||||||||||| ||||| |||||| |||||||||||||||||||||||| |
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| T |
7499685 |
atgattaagatttttacttcatgatctagaaacataaaaaactgagacatc |
7499735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 7503067 - 7503107
Alignment:
| Q |
25 |
gatttatacttaatgatcaagaaacataaaaaactgagaca |
65 |
Q |
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| T |
7503067 |
gatttttacttaatgatcaagaaacataaaaaactgggaca |
7503107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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