View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10827_low_6 (Length: 310)
Name: NF10827_low_6
Description: NF10827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10827_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 50240577 - 50240868
Alignment:
| Q |
1 |
ggtaattcaagacctaaaggctaatgagattgttaaaagtgaaggcattgttatcagaaaacgtcttcagttgatgctgtataatatcatgtataggatg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50240577 |
ggtagttcaagacctaaaggctaatgagattgttaaaagtgaaggcattgttatcagaaaacgtcttcagttgatgctgtataatatcatgtataggatg |
50240676 |
T |
|
| Q |
101 |
atgtttgatgccaaatttgagtctcaagaagatcctttgtttattcaggctacaaggtttaactctgagagaagccgtttggcacagagttttgaatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50240677 |
atgtttgatgccaaatttgagtctcaagaagatcctttgtttattcaggctacaaggtttaactctgagagaagccgtttggcacagagttttgaatata |
50240776 |
T |
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| Q |
201 |
attatggagattttataccattgcttaggccatttttgagaggctaccttaacaagtgcaaggacctgcaaactaggaggctggcatttttc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50240777 |
attatggagattttataccattgcttaggccatttttgagaggctaccttaacaagtgcaaggacctgcaaactaggaggctggcatttttc |
50240868 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 32083682 - 32083641
Alignment:
| Q |
68 |
cagttgatgctgtataatatcatgtataggatgatgtttgat |
109 |
Q |
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| T |
32083682 |
cagttgatgatgtataatattatgtataggattatgtttgat |
32083641 |
T |
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