View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10827_low_7 (Length: 269)
Name: NF10827_low_7
Description: NF10827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10827_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 47298970 - 47299214
Alignment:
| Q |
16 |
ataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataacc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47298970 |
ataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataacc |
47299069 |
T |
|
| Q |
116 |
aaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaac |
215 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47299070 |
aaatgggtttccacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccgtagtatccaacaagtggcgaattgttaacattaaac |
47299169 |
T |
|
| Q |
216 |
cttgagcgtgcattggcgatgcacatcattcgtacctcttcatct |
260 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47299170 |
ctcgagcgtgcattggcgatgcacatcattcgtacctcttcatct |
47299214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 47292363 - 47292602
Alignment:
| Q |
16 |
ataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataacc |
115 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292363 |
ataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataacc |
47292462 |
T |
|
| Q |
116 |
aaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaac |
215 |
Q |
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|||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |
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| T |
47292463 |
aaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaattgttaatgttaaac |
47292562 |
T |
|
| Q |
216 |
cttgagcgtgcattggcgatgcacatcattcgtacctctt |
255 |
Q |
| |
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|| |||||||||||| ||| |||||||||||||||||||| |
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| T |
47292563 |
ctcgagcgtgcattgacgacgcacatcattcgtacctctt |
47292602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 47267885 - 47267641
Alignment:
| Q |
16 |
ataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataacc |
115 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47267885 |
ataaacaccgctctttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaactccacagcataacc |
47267786 |
T |
|
| Q |
116 |
aaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaac |
215 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
47267785 |
taatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaattgttagcattaaac |
47267686 |
T |
|
| Q |
216 |
cttgagcgtgcattggcgatgcacatcattcgtacctcttcatct |
260 |
Q |
| |
|
|| || ||||||||| | || ||||||||||||| ||| |||||| |
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|
| T |
47267685 |
ctcgaacgtgcattgacaatacacatcattcgtatctcgtcatct |
47267641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 47283850 - 47283606
Alignment:
| Q |
16 |
ataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataacc |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||||||||||| |
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| T |
47283850 |
ataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacc |
47283751 |
T |
|
| Q |
116 |
aaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaac |
215 |
Q |
| |
|
|| |||||| |||||||||||| ||| |||||||| || || ||| ||||||||||||||||||| ||||||||||||||||||| || | | ||||| |
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|
| T |
47283750 |
taaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccctaaac |
47283651 |
T |
|
| Q |
216 |
cttgagcgtgcattggcgatgcacatcattcgtacctcttcatct |
260 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
47283650 |
cttgaacgtgcattaacgatgcacatcattcgtacttcttcatct |
47283606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 47279257 - 47279013
Alignment:
| Q |
16 |
ataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataacc |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||| ||||||| |
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|
| T |
47279257 |
ataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactccataacc |
47279158 |
T |
|
| Q |
116 |
aaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaac |
215 |
Q |
| |
|
|| || ||| |||||||||||| ||| |||||||| || || ||| ||||||||||||||||||| ||||||||||||||||||| || | | ||||| |
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|
| T |
47279157 |
taaaggatttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccctaaac |
47279058 |
T |
|
| Q |
216 |
cttgagcgtgcattggcgatgcacatcattcgtacctcttcatct |
260 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
47279057 |
cttgaacgtgcattaacgatgcacatcattcgtacttcttcatct |
47279013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 47242981 - 47242737
Alignment:
| Q |
16 |
ataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataacc |
115 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| || | |||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||| |
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|
| T |
47242981 |
ataaacatcgttccttaataaccataaaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacc |
47242882 |
T |
|
| Q |
116 |
aaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaac |
215 |
Q |
| |
|
||| ||||| ||||||||| | |||| |||||||| ||||| | | |||||| || ||||| || |||||||||| ||| |||| || ||||| |
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|
| T |
47242881 |
taattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatgcaattaccgtaatatccaacaaacaaagaagggttagcactaaac |
47242782 |
T |
|
| Q |
216 |
cttgagcgtgcattggcgatgcacatcattcgtacctcttcatct |
260 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47242781 |
ctggaacgtgcattaacgatgcacatcattcgtacctcttcatct |
47242737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 47257108 - 47256861
Alignment:
| Q |
16 |
ataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataacc |
115 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||| || |||||||| | ||||||||||| ||||||| |||||||| |||||||||||||||||| |
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|
| T |
47257108 |
ataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtacttctctgtaacttgagcttttgcttttcttatcaactccactgcataacc |
47257009 |
T |
|
| Q |
116 |
aaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaa---ttgttaacatta |
212 |
Q |
| |
|
||| ||||| ||||||||| | |||| |||||||| ||||| | | |||||| |||||| ||||| ||||||| || | |||| || ||| || || |
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|
| T |
47257008 |
taattggtttccacaaagctcctttgcggtggtgactgccgccgagaaagcaatacagttgccataatatccaatgagcgacgaacggttattagcacta |
47256909 |
T |
|
| Q |
213 |
aaccttgagcgtgcattggcgatgcacatcattcgtacctcttcatct |
260 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| || ||||||||| |
|
|
| T |
47256908 |
aacctcgagcgtgcattaacgatgcacatcattcgcacatcttcatct |
47256861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 32731648 - 32731404
Alignment:
| Q |
16 |
ataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataacc |
115 |
Q |
| |
|
||||||| |||||||||||||||||| ||| || | |||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||| |
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|
| T |
32731648 |
ataaacatcgttccttaataaccatacaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacc |
32731549 |
T |
|
| Q |
116 |
aaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaac |
215 |
Q |
| |
|
||| ||||| ||||||||| | |||| |||||||| ||||| | | |||||| ||| ||||| || ||||||| || ||| |||| || ||||| |
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|
| T |
32731548 |
taattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatacaattaccgtaatatccaataaacaaagaagggttagcactaaac |
32731449 |
T |
|
| Q |
216 |
cttgagcgtgcattggcgatgcacatcattcgtacctcttcatct |
260 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32731448 |
ctggaacgtgcattaacgatgcacatcattcgtacctcttcatct |
32731404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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