View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10828_low_3 (Length: 267)
Name: NF10828_low_3
Description: NF10828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10828_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 54815902 - 54816150
Alignment:
| Q |
6 |
aaaatcttcttgtacaccaccatctatcatgaatgtgaaatttac-ctaaacagattactgaaggtcattggattcttgcattcaattagttaaccatac |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54815902 |
aaaatcttcttgtacaccaccatctatcatgaatgtgaaatttacactaaacagattactgaaggtcattggattcttgcattcaattagttaaccatac |
54816001 |
T |
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| Q |
105 |
cgtattaccacttactgatggtgattggtgacagtttataagttcctatcatagcagaagagctttctcagtagaattatcatccttaaggcttaaacac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54816002 |
cgtattaccacttactgatggtgattggtgacagtttataagttcctatcatagcagaagagctttctcagtagaattatcatccttaaggcttaaacac |
54816101 |
T |
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| Q |
205 |
caataattcgagtcaactttaatgtttactaagaaagcatttgttggcc |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54816102 |
caataattcgagtcaactttaatgtttactaagaaagcatttgttggcc |
54816150 |
T |
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