View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10828_low_5 (Length: 230)

Name: NF10828_low_5
Description: NF10828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10828_low_5
NF10828_low_5
[»] chr1 (48 HSPs)
chr1 (9-210)||(45065924-45066125)
chr1 (1-48)||(34008178-34008225)
chr1 (1-48)||(47214206-47214253)
chr1 (1-47)||(32915098-32915144)
chr1 (1-49)||(7171262-7171310)
chr1 (3-47)||(24673068-24673112)
chr1 (1-56)||(47721399-47721454)
chr1 (1-56)||(47728391-47728446)
chr1 (1-47)||(10890072-10890118)
chr1 (1-47)||(15705088-15705134)
chr1 (7-49)||(33024603-33024645)
chr1 (1-47)||(37588701-37588747)
chr1 (1-47)||(51286393-51286439)
chr1 (1-47)||(52362481-52362527)
chr1 (7-48)||(1852983-1853024)
chr1 (1-46)||(13489662-13489707)
chr1 (1-46)||(44789169-44789214)
chr1 (7-47)||(7078532-7078572)
chr1 (1-41)||(30658874-30658914)
chr1 (1-49)||(43893254-43893302)
chr1 (8-47)||(902637-902676)
chr1 (1-48)||(9566987-9567034)
chr1 (7-46)||(35136844-35136883)
chr1 (7-46)||(36577444-36577483)
chr1 (8-46)||(4470347-4470385)
chr1 (9-47)||(8200086-8200124)
chr1 (9-47)||(33358181-33358219)
chr1 (1-47)||(46911292-46911338)
chr1 (9-47)||(48220166-48220204)
chr1 (10-48)||(48624882-48624920)
chr1 (1-47)||(48983694-48983740)
chr1 (7-48)||(7128116-7128157)
chr1 (8-49)||(7422970-7423011)
chr1 (7-48)||(8411750-8411791)
chr1 (1-50)||(17082769-17082818)
chr1 (1-46)||(19947767-19947812)
chr1 (7-48)||(26585911-26585952)
chr1 (8-49)||(34040533-34040574)
chr1 (1-46)||(47820527-47820572)
chr1 (1-46)||(52714927-52714972)
chr1 (9-41)||(3977560-3977592)
chr1 (7-47)||(11097916-11097956)
chr1 (1-41)||(18982524-18982564)
chr1 (6-46)||(21486348-21486388)
chr1 (1-49)||(30467552-30467600)
chr1 (1-41)||(37947113-37947153)
chr1 (7-47)||(46082153-46082193)
chr1 (1-41)||(47215755-47215795)
[»] chr2 (45 HSPs)
chr2 (100-210)||(4472855-4472966)
chr2 (123-210)||(42904964-42905052)
chr2 (1-46)||(28245728-28245773)
chr2 (1-41)||(14233745-14233785)
chr2 (1-49)||(39449143-39449191)
chr2 (7-49)||(18176937-18176979)
chr2 (1-47)||(30977888-30977934)
chr2 (7-49)||(35589419-35589461)
chr2 (1-46)||(6999094-6999139)
chr2 (1-46)||(8427552-8427597)
chr2 (1-46)||(13765400-13765445)
chr2 (1-46)||(25881544-25881589)
chr2 (1-41)||(2563709-2563749)
chr2 (9-57)||(2971837-2971885)
chr2 (1-41)||(9194434-9194474)
chr2 (7-47)||(36802895-36802935)
chr2 (4-47)||(2220992-2221035)
chr2 (9-56)||(15141463-15141510)
chr2 (1-56)||(27490757-27490811)
chr2 (1-47)||(670493-670539)
chr2 (1-47)||(2841833-2841879)
chr2 (9-47)||(3012868-3012906)
chr2 (9-47)||(6646834-6646872)
chr2 (13-47)||(10711735-10711769)
chr2 (1-47)||(14876956-14877002)
chr2 (1-47)||(29711978-29712023)
chr2 (1-47)||(36517195-36517241)
chr2 (1-47)||(38821365-38821411)
chr2 (1-46)||(6170630-6170675)
chr2 (1-46)||(7574435-7574480)
chr2 (1-46)||(15269861-15269906)
chr2 (7-48)||(18510673-18510714)
chr2 (1-46)||(18723594-18723639)
chr2 (7-48)||(28244464-28244505)
chr2 (8-41)||(44821982-44822015)
chr2 (1-41)||(4384060-4384099)
chr2 (5-41)||(11167549-11167585)
chr2 (1-49)||(12498662-12498710)
chr2 (1-41)||(17395102-17395142)
chr2 (1-41)||(22526020-22526060)
chr2 (9-49)||(26277104-26277144)
chr2 (9-41)||(32972929-32972961)
chr2 (7-47)||(39449266-39449306)
chr2 (9-41)||(42372496-42372528)
chr2 (9-49)||(42678758-42678798)
[»] chr8 (33 HSPs)
chr8 (98-210)||(28740138-28740250)
chr8 (100-210)||(24248785-24248895)
chr8 (1-48)||(3946238-3946285)
chr8 (1-41)||(9549225-9549265)
chr8 (1-47)||(4658289-4658335)
chr8 (1-51)||(36531590-36531640)
chr8 (1-46)||(18651370-18651415)
chr8 (1-42)||(23793116-23793157)
chr8 (1-46)||(29991412-29991457)
chr8 (1-46)||(34718115-34718160)
chr8 (9-49)||(7586184-7586224)
chr8 (1-41)||(40528753-40528793)
chr8 (1-41)||(44064362-44064402)
chr8 (4-47)||(6991837-6991880)
chr8 (7-46)||(16613634-16613673)
chr8 (7-46)||(16872188-16872227)
chr8 (1-48)||(31596946-31596993)
chr8 (1-47)||(5771902-5771948)
chr8 (7-49)||(16966782-16966824)
chr8 (9-47)||(30439528-30439566)
chr8 (9-47)||(41541868-41541906)
chr8 (1-46)||(5601013-5601058)
chr8 (1-46)||(5639562-5639607)
chr8 (1-46)||(12707149-12707194)
chr8 (1-46)||(26026896-26026941)
chr8 (6-47)||(40380280-40380321)
chr8 (1-37)||(145794-145830)
chr8 (7-51)||(1633922-1633966)
chr8 (3-47)||(3441170-3441214)
chr8 (7-47)||(5277736-5277776)
chr8 (9-57)||(16487599-16487647)
chr8 (9-41)||(32954857-32954889)
chr8 (1-49)||(42620003-42620051)
[»] chr5 (29 HSPs)
chr5 (1-51)||(8920073-8920123)
chr5 (1-49)||(30640787-30640835)
chr5 (8-47)||(15953066-15953105)
chr5 (7-49)||(22402658-22402700)
chr5 (1-47)||(32872924-32872970)
chr5 (1-47)||(43214085-43214131)
chr5 (1-46)||(6446544-6446589)
chr5 (1-46)||(6517712-6517757)
chr5 (1-46)||(21922171-21922216)
chr5 (1-46)||(41175732-41175777)
chr5 (1-41)||(10649440-10649480)
chr5 (1-48)||(189729-189776)
chr5 (7-46)||(35099037-35099076)
chr5 (9-47)||(3640219-3640257)
chr5 (1-47)||(13089808-13089854)
chr5 (1-47)||(17402948-17402994)
chr5 (1-47)||(19481208-19481254)
chr5 (3-41)||(27440611-27440649)
chr5 (1-46)||(16594402-16594447)
chr5 (7-48)||(42446323-42446364)
chr5 (9-41)||(1839367-1839399)
chr5 (1-41)||(6241626-6241666)
chr5 (7-47)||(8675465-8675505)
chr5 (1-41)||(9581584-9581624)
chr5 (7-47)||(9977118-9977158)
chr5 (1-49)||(10865314-10865362)
chr5 (2-46)||(21155987-21156031)
chr5 (7-47)||(23126375-23126415)
chr5 (1-41)||(41173257-41173297)
[»] chr7 (30 HSPs)
chr7 (1-48)||(37899321-37899368)
chr7 (1-47)||(44184585-44184631)
chr7 (1-46)||(22638910-22638955)
chr7 (1-48)||(37899239-37899286)
chr7 (1-52)||(41893909-41893960)
chr7 (7-46)||(43573575-43573614)
chr7 (9-47)||(3937144-3937182)
chr7 (9-47)||(33224834-33224872)
chr7 (127-210)||(3219875-3219960)
chr7 (7-47)||(13162918-13162958)
chr7 (7-47)||(13729725-13729765)
chr7 (7-47)||(21822631-21822671)
chr7 (1-57)||(41018652-41018708)
chr7 (1-53)||(47494964-47495016)
chr7 (1-48)||(33180736-33180783)
chr7 (9-48)||(47078273-47078312)
chr7 (9-47)||(11352996-11353034)
chr7 (7-41)||(11564898-11564932)
chr7 (1-47)||(12007212-12007258)
chr7 (1-47)||(35586799-35586845)
chr7 (1-47)||(47448825-47448871)
chr7 (5-46)||(10055662-10055703)
chr7 (1-46)||(39331985-39332030)
chr7 (9-41)||(3062347-3062379)
chr7 (9-41)||(7817654-7817686)
chr7 (1-41)||(10591041-10591081)
chr7 (7-47)||(16980296-16980336)
chr7 (7-47)||(21559797-21559837)
chr7 (9-53)||(25887587-25887631)
chr7 (1-49)||(40417772-40417820)
[»] chr6 (19 HSPs)
chr6 (100-210)||(3293326-3293433)
chr6 (7-56)||(30036826-30036875)
chr6 (1-46)||(35213587-35213632)
chr6 (1-48)||(20822894-20822941)
chr6 (1-47)||(15318214-15318260)
chr6 (1-47)||(32459543-32459589)
chr6 (1-47)||(33421759-33421805)
chr6 (1-46)||(8747169-8747214)
chr6 (1-49)||(32046695-32046743)
chr6 (1-47)||(15368849-15368895)
chr6 (9-47)||(28748123-28748161)
chr6 (1-47)||(33651019-33651065)
chr6 (1-47)||(34442089-34442135)
chr6 (1-46)||(6531209-6531254)
chr6 (1-50)||(18141327-18141376)
chr6 (6-47)||(27334857-27334898)
chr6 (6-47)||(27395597-27395638)
chr6 (1-41)||(24900780-24900820)
chr6 (1-41)||(28982665-28982705)
[»] chr3 (39 HSPs)
chr3 (1-47)||(46019461-46019507)
chr3 (1-47)||(49417574-49417620)
chr3 (1-48)||(8821628-8821675)
chr3 (9-48)||(21005198-21005237)
chr3 (1-47)||(21196123-21196169)
chr3 (1-46)||(30567986-30568031)
chr3 (1-46)||(37927231-37927276)
chr3 (7-48)||(50207002-50207043)
chr3 (1-46)||(50638375-50638420)
chr3 (1-46)||(55399999-55400044)
chr3 (1-41)||(31376791-31376831)
chr3 (4-56)||(32146015-32146067)
chr3 (7-47)||(39671130-39671170)
chr3 (1-48)||(10811133-10811180)
chr3 (7-46)||(24482995-24483034)
chr3 (1-48)||(37410882-37410929)
chr3 (1-40)||(51343414-51343453)
chr3 (9-47)||(3281738-3281776)
chr3 (1-47)||(33976420-33976466)
chr3 (6-56)||(38944172-38944222)
chr3 (9-47)||(49761318-49761356)
chr3 (1-47)||(50559238-50559284)
chr3 (9-47)||(51465936-51465974)
chr3 (1-46)||(14207284-14207329)
chr3 (1-46)||(14215032-14215077)
chr3 (1-46)||(34057979-34058024)
chr3 (7-48)||(44677516-44677557)
chr3 (1-46)||(45054974-45055019)
chr3 (1-46)||(51873393-51873438)
chr3 (7-47)||(10207005-10207045)
chr3 (1-41)||(21195917-21195957)
chr3 (1-49)||(26645023-26645071)
chr3 (1-41)||(31425539-31425579)
chr3 (1-41)||(31931045-31931085)
chr3 (1-41)||(37143126-37143166)
chr3 (9-41)||(48281888-48281920)
chr3 (1-41)||(49167755-49167795)
chr3 (9-49)||(54195348-54195388)
chr3 (7-47)||(54694145-54694185)
[»] chr4 (47 HSPs)
chr4 (1-46)||(1816026-1816071)
chr4 (1-41)||(2401615-2401655)
chr4 (7-48)||(624344-624385)
chr4 (7-40)||(13263429-13263462)
chr4 (1-38)||(30170046-30170083)
chr4 (1-53)||(4914899-4914951)
chr4 (7-47)||(22819648-22819688)
chr4 (1-57)||(51852066-51852121)
chr4 (1-48)||(9362704-9362751)
chr4 (8-47)||(14010151-14010190)
chr4 (9-48)||(31657656-31657695)
chr4 (8-47)||(33278674-33278713)
chr4 (7-46)||(51887663-51887702)
chr4 (1-48)||(53654776-53654823)
chr4 (1-47)||(2256356-2256402)
chr4 (1-47)||(2999111-2999157)
chr4 (1-47)||(4915699-4915745)
chr4 (7-41)||(14527649-14527683)
chr4 (9-47)||(27408153-27408191)
chr4 (9-47)||(28657463-28657501)
chr4 (7-49)||(30079843-30079885)
chr4 (8-50)||(35017149-35017191)
chr4 (1-47)||(37514158-37514204)
chr4 (7-49)||(39345012-39345054)
chr4 (1-47)||(42815403-42815449)
chr4 (9-47)||(43769722-43769760)
chr4 (4-54)||(45082973-45083022)
chr4 (1-47)||(51225551-51225597)
chr4 (1-47)||(51255745-51255791)
chr4 (1-47)||(56557732-56557778)
chr4 (100-196)||(9234260-9234359)
chr4 (1-46)||(14593828-14593873)
chr4 (1-46)||(18883001-18883046)
chr4 (1-46)||(21617183-21617228)
chr4 (1-46)||(32546383-32546428)
chr4 (1-46)||(33860647-33860692)
chr4 (9-46)||(39312638-39312675)
chr4 (7-56)||(41486175-41486224)
chr4 (7-52)||(41495007-41495052)
chr4 (1-46)||(56271360-56271405)
chr4 (8-48)||(22257229-22257269)
chr4 (9-41)||(29974350-29974382)
chr4 (7-51)||(36111428-36111472)
chr4 (1-49)||(45851757-45851805)
chr4 (8-48)||(47014937-47014977)
chr4 (6-50)||(51359821-51359865)
chr4 (9-41)||(54802698-54802730)
[»] scaffold1064 (1 HSPs)
scaffold1064 (100-210)||(512-616)
[»] scaffold0532 (1 HSPs)
scaffold0532 (1-46)||(10964-11009)
[»] scaffold0321 (1 HSPs)
scaffold0321 (7-51)||(19631-19675)
[»] scaffold0100 (1 HSPs)
scaffold0100 (9-47)||(44785-44823)
[»] scaffold0135 (1 HSPs)
scaffold0135 (100-196)||(40125-40224)
[»] scaffold0016 (1 HSPs)
scaffold0016 (6-47)||(204476-204517)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-46)||(223505-223550)
[»] scaffold0662 (1 HSPs)
scaffold0662 (8-48)||(1076-1116)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 45065924 - 45066125
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctctataatttattcagnnnnnnnnnnnnaaatttagatgtgtcatgtggcacagttaggtgatg 108  Q
    |||||||||||||||| |||||||||||||||| ||| ||||||||||||||            ||||||||| ||| |||||||||| |||||||||||    
T  45065924 aaagttgtcacaaaatggatgttcaaatatcatttctttataatttattcagtttttctattttaaatttagacgtggcatgtggcactgttaggtgatg 45066023  T
Q  109 aatatcactcactactaaattactctaactactcatatttaagaaactaaaataatattgaaattctacattgattcaatataaggtcatacaatgctta 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  45066024 aatatcactcactactaaattactctaactactcatatctaagaaactaaaataatattgaaattcttcattgattcaatataaggttatacaatactta 45066123  T
Q  209 ta 210  Q
    ||    
T  45066124 ta 45066125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34008225 - 34008178
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||    
T  34008225 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctcta 34008178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 47214253 - 47214206
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||    
T  47214253 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctcta 47214206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32915098 - 32915144
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||    
T  32915098 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctct 32915144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7171262 - 7171310
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||||||||||  ||||||||||||||||||||| |||||||    
T  7171262 ttgtcacaaaagttgtcattaaatagatgttcaaatatcatttctctat 7171310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 24673112 - 24673068
Alignment:
Q  3 gtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||||||||| |||||    
T  24673112 gtcacaaaagttgtcataaaatagatgttcaaatatcatttctct 24673068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47721454 - 47721399
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataatttat 56  Q
    |||||||||||||||||| |||||| ||||| ||||||||| |||||| |||||||    
T  47721454 ttgtcacaaaagttgtcaaaaaataaatgtttaaatatcatttctctaaaatttat 47721399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47728446 - 47728391
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataatttat 56  Q
    |||||||||||||||||| |||||| ||||| ||||||||| |||||| |||||||    
T  47728446 ttgtcacaaaagttgtcaaaaaataaatgtttaaatatcatttctctaaaatttat 47728391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10890072 - 10890118
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||    
T  10890072 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 10890118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15705088 - 15705134
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||    
T  15705088 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 15705134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 33024603 - 33024645
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  33024603 caaaagttgtcactaaatagatgttcaaatatcatttctctat 33024645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37588701 - 37588747
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||||    
T  37588701 ttgtaacaaaagttgtcacaaaataaatgttcaaatatcatttctct 37588747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 51286393 - 51286439
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| |||||| ||||||||||||||| |||||    
T  51286393 ttgtcacaaaagttgtcataaaataaatgttcaaatatcatttctct 51286439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 52362527 - 52362481
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||    
T  52362527 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 52362481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 1852983 - 1853024
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  1852983 caaaagttgtcactaaatagatgttcaaatatcatttctcta 1853024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13489707 - 13489662
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||    
T  13489707 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 13489662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44789169 - 44789214
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||    
T  44789169 ttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctc 44789214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 7078532 - 7078572
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  7078532 caaaagttgtcacaaaatagatgtacaaatatcatttctct 7078572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30658874 - 30658914
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  30658874 ttgtaacaaaagttgtcacaaaatggatgttcaaatatcat 30658914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43893302 - 43893254
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    |||||| ||||||||| ||||||| |||||||||||||||| |||||||    
T  43893302 ttgtcataaaagttgtgacaaaatggatgttcaaatatcatttctctat 43893254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 902676 - 902637
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  902676 aaaagttgtcactaaatagatgttcaaatatcatttctct 902637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9566987 - 9567034
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||||||||| ||||| | |||||||||||||| ||||||    
T  9566987 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcta 9567034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 35136883 - 35136844
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  35136883 caaaagttgtcacaaaatggatgttcaaatatcatttctc 35136844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 36577444 - 36577483
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  36577444 caaaagttgtcacaaaatggatgttcaaatatcatttctc 36577483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 4470347 - 4470385
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  4470347 aaaagttgtcacaaaatggatgttcaaatatcatttctc 4470385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 8200124 - 8200086
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  8200124 aaagttgtcacaaaatggatgttcaaatatcatttctct 8200086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 33358181 - 33358219
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  33358181 aaagttgtcacaaaatggatgttcaaatatcatttctct 33358219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46911338 - 46911292
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||| ||||||||||||||||||| |||||| ||||||||| |||||    
T  46911338 ttgtaacaaaagttgtcacaaaatggatgttgaaatatcatttctct 46911292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 48220166 - 48220204
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  48220166 aaagttgtcacaaaatggatgttcaaatatcatttctct 48220204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 48624920 - 48624882
Alignment:
Q  10 aagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  48624920 aagttgtcacaaaatggatgttcaaatatcatttctcta 48624882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 48983694 - 48983740
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| | |||||||||||||| |||||    
T  48983694 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 48983740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 7128157 - 7128116
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||| |||| |||||||||||||||| ||||||    
T  7128157 caaaagttgtcactaaatggatgttcaaatatcatttctcta 7128116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 7423011 - 7422970
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||||||||| ||| |||||||||||| |||||||    
T  7423011 aaaagttgtcacaaaattgatattcaaatatcatttctctat 7422970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 8411750 - 8411791
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||| |||| |||||||||||||||| ||||||    
T  8411750 caaaagttgtcactaaatggatgttcaaatatcatttctcta 8411791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17082769 - 17082818
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctata 50  Q
    |||||||||||||||||| ||| ||| ||||||||||| || ||||||||    
T  17082769 ttgtcacaaaagttgtcaaaaagtagttgttcaaatattatttctctata 17082818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19947767 - 19947812
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| ||||| | |||||||||||||| ||||    
T  19947767 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 19947812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 26585911 - 26585952
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||| |||| |||||||||||||||| ||||||    
T  26585911 caaaagttgtcactaaatggatgttcaaatatcatttctcta 26585952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 34040533 - 34040574
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||| ||||||||| |||||||||||||||| |||||||    
T  34040533 aaaagttatcacaaaatggatgttcaaatatcatttctctat 34040574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47820527 - 47820572
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| ||||||||||||| ||||| |||||||||||||||| ||||    
T  47820527 ttgtaacaaaagttgtcataaaatggatgttcaaatatcatttctc 47820572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 52714927 - 52714972
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||| | ||||| |||||||||||||||| ||||    
T  52714927 ttgtcacaaaagttgttataaaatggatgttcaaatatcatttctc 52714972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 3977592 - 3977560
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||||||||| ||||||||||    
T  3977592 aaagttgtcacaaaatagatgtacaaatatcat 3977560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 11097916 - 11097956
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  11097916 caaaagttgtcacaaaatggatgtacaaatatcatttctct 11097956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18982564 - 18982524
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  18982564 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcat 18982524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 21486348 - 21486388
Alignment:
Q  6 acaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| ||||||||| ||||||||||||||||||||| ||||    
T  21486348 acaatagttgtcaccaaatagatgttcaaatatcatttctc 21486388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30467552 - 30467600
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    |||||||||||||||||| |||||   |||||||||||||| |||||||    
T  30467552 ttgtcacaaaagttgtcaaaaaatgactgttcaaatatcatttctctat 30467600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37947153 - 37947113
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    ||||| |||||||||| ||||||||| ||||||||||||||    
T  37947153 ttgtcccaaaagttgtaacaaaatagttgttcaaatatcat 37947113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 46082153 - 46082193
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  46082153 caaaagttgtcactaaatggatgttcaaatatcatttctct 46082193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47215755 - 47215795
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    ||||||||||||||||||  | |||||||||||||||||||    
T  47215755 ttgtcacaaaagttgtcattatatagatgttcaaatatcat 47215795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 4472966 - 4472855
Alignment:
Q  100 taggtgatgaatatcactcactactaaattactctaactactcatatttaagaaactaaa-ataatattgaaattctacattgattcaatataaggtcat 198  Q
    |||||||||||||| ||  | | |||||||||||||||||||||||| |||||||||||| |||||| ||||||||| | || |||||||||||||||||    
T  4472966 taggtgatgaatattaccaagtgctaaattactctaactactcatatataagaaactaaagataatactgaaattcttcgtttattcaatataaggtcat 4472867  T
Q  199 acaatgcttata 210  Q
    ||||||||||||    
T  4472866 acaatgcttata 4472855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 42905052 - 42904964
Alignment:
Q  123 ctaaattactctaactactcatatttaagaaactaaa-ataatattgaaattctacattgattcaatataaggtcatacaatgcttata 210  Q
    |||||||||||||| ||||| ||| |||||||||||| |||||| |||||||||  ||||||||| || |||||||||||||| |||||    
T  42905052 ctaaattactctaagtactcttatctaagaaactaaagataataatgaaattctttattgattcattacaaggtcatacaatgtttata 42904964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28245773 - 28245728
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  28245773 ttgtcacaaaagttgtcgcaaaatagatgttcaaatatcatttctc 28245728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14233745 - 14233785
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  14233745 ttgtcacaaaagttgtcacaaaatggatgttcaaatatcat 14233785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39449143 - 39449191
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  39449143 ttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctctat 39449191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 18176979 - 18176937
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  18176979 caaaagttgtcactaaatagatgttcaaatatcatttctctat 18176937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30977934 - 30977888
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||| ||||||||||||||||| |||||||||||||||| |||||    
T  30977934 ttgtcataaaagttgtcacaaaatggatgttcaaatatcatttctct 30977888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 35589419 - 35589461
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    |||||||||||||||||| |||||||||||||||| |||||||    
T  35589419 caaaagttgtcacaaaatggatgttcaaatatcatttctctat 35589461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6999094 - 6999139
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||    
T  6999094 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 6999139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8427597 - 8427552
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||    
T  8427597 ttgtcacaaaaattgtcaaaaaatagatgttcaaatatcatttctc 8427552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13765445 - 13765400
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||    
T  13765445 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 13765400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25881589 - 25881544
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  25881589 ttgtcacaaaaattgtcgcaaaatagatgttcaaatatcatttctc 25881544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2563749 - 2563709
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  2563749 ttgtcacaaaagttgtcataaaatggatgttcaaatatcat 2563709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 2971837 - 2971885
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctctataatttatt 57  Q
    |||||||||||||||| |||||||||||||| | ||||| |||||||||    
T  2971837 aaagttgtcacaaaatggatgttcaaatatcttttctctttaatttatt 2971885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9194474 - 9194434
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  9194474 ttgtcataaaagttgtcacaaaatggatgttcaaatatcat 9194434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 36802935 - 36802895
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  36802935 caaaagttgtcacaaaatggatgttcaaatatcatttctct 36802895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 2221035 - 2220992
Alignment:
Q  4 tcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||| |||||||||||||||||||||||||| || |||||    
T  2221035 tcacaaaaattgtcacaaaatagatgttcaaatattatttctct 2220992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 15141510 - 15141463
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctctataatttat 56  Q
    |||||||||| ||||||||||| |||||||||| |||||| |||||||    
T  15141510 aaagttgtcataaaatagatgtacaaatatcatttctctaaaatttat 15141463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27490757 - 27490811
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataatttat 56  Q
    |||||||||||||||||| ||||| | |||||||||||||| ||||| ||||||||    
T  27490757 ttgtcacaaaagttgtca-aaaatggttgttcaaatatcatttctctttaatttat 27490811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 670493 - 670539
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||| |||||||||||||| |||| |||||||||||||||| |||||    
T  670493 ttgttacaaaagttgtcactaaatggatgttcaaatatcatttctct 670539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2841879 - 2841833
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||| ||||||||||||||||||| |||| ||||||||||| |||||    
T  2841879 ttgtaacaaaagttgtcacaaaatggatgatcaaatatcatttctct 2841833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 3012868 - 3012906
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  3012868 aaagttgtcacaaaatggatgttcaaatatcatttctct 3012906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 6646872 - 6646834
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  6646872 aaagttgtcacaaaatggatgttcaaatatcatttctct 6646834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 10711769 - 10711735
Alignment:
Q  13 ttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||||||||||||||| |||||    
T  10711769 ttgtcacaaaatagatgttcaaatatcatttctct 10711735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14877002 - 14876956
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||||| |||||| ||||||| |||||    
T  14877002 ttgtcacaaaagttgtcaaaaaatagttgttcacatatcatttctct 14876956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29712023 - 29711978
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||||    
T  29712023 ttgtcacaaaa-ttgtcacaaaatggatgttcaaatatcatttctct 29711978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36517241 - 36517195
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||| || ||| |||||||||||||||||||||| |||||    
T  36517241 ttgtcacaaaaattatcataaaatagatgttcaaatatcatttctct 36517195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38821411 - 38821365
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| | |||||||||||||| |||||    
T  38821411 ttgtcacaaaagttgtcataaaatggttgttcaaatatcatttctct 38821365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6170675 - 6170630
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| ||||| |||||| ||||||||| ||||    
T  6170675 ttgtcacaaaagttgtcataaaatggatgttgaaatatcatttctc 6170630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7574480 - 7574435
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||| ||||||||||  ||||||||||||||||||||||| ||||    
T  7574480 ttgtctcaaaagttgtagcaaaatagatgttcaaatatcatttctc 7574435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15269906 - 15269861
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||| |||||| ||||| |||||||||||||||| ||||    
T  15269906 ttgtcacaaaaattgtcataaaatggatgttcaaatatcatttctc 15269861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 18510714 - 18510673
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  18510714 caaaagttgtcaaaaaatagttgttcaaatatcatttctcta 18510673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18723639 - 18723594
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| |||||| |||||||||||| |||||||||||||||| ||||    
T  18723639 ttgtaacaaaaattgtcacaaaatggatgttcaaatatcatttctc 18723594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 28244464 - 28244505
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||| ||||||||||||||||||||| |||| ||||||    
T  28244464 caaaagttatcacaaaatagatgttcaaatttcatttctcta 28244505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 44821982 - 44822015
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    ||||||| ||||||||||||||||||||||||||    
T  44821982 aaaagttatcacaaaatagatgttcaaatatcat 44822015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4384099 - 4384060
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  4384099 ttgtcacaaaaattgt-acaaaatagatgttcaaatatcat 4384060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 11167549 - 11167585
Alignment:
Q  5 cacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||| |||||||||| |||||||||||||||    
T  11167549 cacaaaagttatcacaaaataaatgttcaaatatcat 11167585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12498662 - 12498710
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||| |||| || |||| |||||||||||||||| |||||||    
T  12498662 ttgtcacaaaaattgttaccaaatggatgttcaaatatcatttctctat 12498710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17395102 - 17395142
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  17395102 ttgtcacaaaggttgttacaaattagatgttcaaatatcat 17395142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22526020 - 22526060
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    ||||||||||| |||||| ||||| ||||||||||||||||    
T  22526020 ttgtcacaaaaattgtcaaaaaatggatgttcaaatatcat 22526060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 26277144 - 26277104
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||| |||| |||||||||||||||| |||||||    
T  26277144 aaagttgtcactaaatggatgttcaaatatcatttctctat 26277104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 32972929 - 32972961
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||| ||||||||||||||||    
T  32972929 aaagttgtcacaaaatggatgttcaaatatcat 32972961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 39449306 - 39449266
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  39449306 caaaagttgtcacaaaatggatattcaaatatcatttctct 39449266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 42372528 - 42372496
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcat 41  Q
    ||||||||||| |||||||||||||||||||||    
T  42372528 aaagttgtcactaaatagatgttcaaatatcat 42372496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 42678798 - 42678758
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||| |||| |||||||||||||||| |||||||    
T  42678798 aaagttgtcactaaatggatgttcaaatatcatttctctat 42678758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 28740250 - 28740138
Alignment:
Q  98 gttaggtgatgaatatcactcactactaaattactctaactactcatatttaagaaactaaaataatattgaaattctacattgattcaatataaggtca 197  Q
    |||||||||||||||||||  | |||||| ||||||||||||||| ||| ||||| |||||||||||| ||||||||| ||||  || | ||||||||||    
T  28740250 gttaggtgatgaatatcaccaagtactaatttactctaactactcctatataagatactaaaataataatgaaattcttcattactttattataaggtca 28740151  T
Q  198 tacaatgcttata 210  Q
    ||||||| |||||    
T  28740150 tacaatgtttata 28740138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 24248895 - 24248785
Alignment:
Q  100 taggtgatgaatatcactcactactaaattactctaactactcatatttaagaaactaaa-ataatattgaaattctacattgattcaatataaggtcat 198  Q
    |||||||||||||||||  | || ||||||||||||||||||| ||| || ||||||||| |||||| ||||| | | ||||||||||||||||||||||    
T  24248895 taggtgatgaatatcaca-agtattaaattactctaactactcctatctatgaaactaaagataatactgaaaattttcattgattcaatataaggtcat 24248797  T
Q  199 acaatgcttata 210  Q
    ||||| ||||||    
T  24248796 acaatacttata 24248785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3946285 - 3946238
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||    
T  3946285 ttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctcta 3946238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9549225 - 9549265
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  9549225 ttgtcacaaaagttgtcacaaaatggatgttcaaatatcat 9549265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4658289 - 4658335
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||    
T  4658289 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 4658335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36531640 - 36531590
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataa 51  Q
    ||||||||| ||||||||| |||| |||||||||||||||| |||||||||    
T  36531640 ttgtcacaatagttgtcaccaaatggatgttcaaatatcatttctctataa 36531590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18651415 - 18651370
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||| || ||||||||||||||||||||| ||||    
T  18651415 ttgtcacaaaagttgttaccaaatagatgttcaaatatcatttctc 18651370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23793116 - 23793157
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcata 42  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  23793116 ttgtcacataagttgtcacaaaatggatgttcaaatatcata 23793157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29991457 - 29991412
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||    
T  29991457 ttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctc 29991412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34718160 - 34718115
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||    
T  34718160 ttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctc 34718115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 7586184 - 7586224
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  7586184 aaagttgtcaccaaatagatgttcaaatatcatttctctat 7586224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40528793 - 40528753
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  40528793 ttgtcataaaagttgtcacaaaatagttgttcaaatatcat 40528753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44064402 - 44064362
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  44064402 ttgttacaaaaattgtcacaaaatagatgttcaaatatcat 44064362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 6991837 - 6991880
Alignment:
Q  4 tcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||    
T  6991837 tcacaaaaattgtcaccaaatagatgttcaaatatcatttctct 6991880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 16613673 - 16613634
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  16613673 caaaaattgtcacaaaatagatgttcaaatatcatttctc 16613634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 16872188 - 16872227
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  16872188 caaaagttgtcacaaaatggatgttcaaatatcatttctc 16872227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31596993 - 31596946
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||| |||||| ||||| |||||||||||||||| ||||||    
T  31596993 ttgtcacaaaaattgtcataaaatggatgttcaaatatcatttctcta 31596946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5771902 - 5771948
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||| ||||||||||||||||||| | |||||||||||||| |||||    
T  5771902 ttgttacaaaagttgtcacaaaatggttgttcaaatatcatttctct 5771948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 16966824 - 16966782
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||||| |||| |||||||||||||||| |||||||    
T  16966824 caaaagttgtcactaaatggatgttcaaatatcatttctctat 16966782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 30439528 - 30439566
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  30439528 aaagttgtcacaaaatggatgttcaaatatcatttctct 30439566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 41541906 - 41541868
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  41541906 aaagttgtcacaaaatggatgttcaaatatcatttctct 41541868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5601013 - 5601058
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| ||||| | |||||||||||||| ||||    
T  5601013 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 5601058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5639607 - 5639562
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| ||||| | |||||||||||||| ||||    
T  5639607 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 5639562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12707194 - 12707149
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||| |||||||||||| ||||| |||||||||||||||| ||||    
T  12707194 ttgtcgcaaaagttgtcataaaatggatgttcaaatatcatttctc 12707149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26026941 - 26026896
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| ||||| | |||||||||||||| ||||    
T  26026941 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 26026896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 40380321 - 40380280
Alignment:
Q  6 acaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||| ||||||||||| |||||||||| |||||    
T  40380321 acaaaagttgtcataaaatagatgtacaaatatcatttctct 40380280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 145794 - 145830
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaata 37  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  145794 ttgtcataaaagttgtcacaaaatagttgttcaaata 145830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 1633922 - 1633966
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctataa 51  Q
    ||||||||||||| |||| |||||||||||||||| |||| ||||    
T  1633922 caaaagttgtcactaaatggatgttcaaatatcatttctcaataa 1633966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 3441214 - 3441170
Alignment:
Q  3 gtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||| ||||||| || ||||||||||||||| |||||    
T  3441214 gtcacaaaagttatcacaaagtaaatgttcaaatatcatttctct 3441170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 5277736 - 5277776
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||| ||||||||||||| |||||||||||||||| |||||    
T  5277736 caaaggttgtcacaaaatggatgttcaaatatcatttctct 5277776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 16487647 - 16487599
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctctataatttatt 57  Q
    |||||||||| ||||| | |||||||||||||| ||||||||| |||||    
T  16487647 aaagttgtcataaaatggttgttcaaatatcatttctctataaattatt 16487599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 32954889 - 32954857
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||| ||||||||||||||||    
T  32954889 aaagttgtcacaaaatggatgttcaaatatcat 32954857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42620003 - 42620051
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    |||||||||||||||| | ||||| ||||| |||||||||| |||||||    
T  42620003 ttgtcacaaaagttgttagaaaatggatgtacaaatatcatttctctat 42620051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8920123 - 8920073
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataa 51  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  8920123 ttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctctataa 8920073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30640835 - 30640787
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  30640835 ttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctctat 30640787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 15953066 - 15953105
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  15953066 aaaagttgtcacaaaatagatgttcaaatatcatttctct 15953105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 22402658 - 22402700
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  22402658 caaaagttgtcacaaaataaatgttcaaatatcatttctctat 22402700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32872924 - 32872970
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||    
T  32872924 ttgtcacaaaagttgtcaaaaaatagttgttcaaatatcatttctct 32872970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43214085 - 43214131
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||  ||||||||||||||||||||||| |||||    
T  43214085 ttgtcacaaaagttgttgcaaaatagatgttcaaatatcatttctct 43214131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6446544 - 6446589
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||||    
T  6446544 ttgtcacaaaagttgtcgcaaaatagatcttcaaatatcatttctc 6446589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6517757 - 6517712
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||    
T  6517757 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 6517712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21922171 - 21922216
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||    
T  21922171 ttgtcacaaacgttgtcacaaaatggatgttcaaatatcatttctc 21922216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41175732 - 41175777
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||    
T  41175732 ttgtcacaaaagttatcccaaaatagatgttcaaatatcatttctc 41175777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10649480 - 10649440
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  10649480 ttgtcacaaaagttgtcataaaatggatgttcaaatatcat 10649440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 189729 - 189776
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||||| ||| ||||| |||||||||||||||| ||||||    
T  189729 ttgtcacaaaagttatcataaaatggatgttcaaatatcatttctcta 189776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 35099037 - 35099076
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  35099037 caaaagttgtcactaaatagatgttcaaatatcatttctc 35099076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 3640219 - 3640257
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  3640219 aaagttgtctcaaaatagatgttcaaatatcatttctct 3640257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13089808 - 13089854
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| | |||||||||||||| |||||    
T  13089808 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 13089854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17402948 - 17402994
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||| ||||||| |||| |||||||||||||||| |||||    
T  17402948 ttgtcacaaaaattgtcaccaaatggatgttcaaatatcatttctct 17402994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19481208 - 19481254
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||| ||| ||||| |||||||||||||||| |||||    
T  19481208 ttgtcacaaaagttatcataaaatggatgttcaaatatcatttctct 19481254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 27440611 - 27440649
Alignment:
Q  3 gtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  27440611 gtcacaaaagttgttacaaaatagttgttcaaatatcat 27440649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16594402 - 16594447
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||| | ||||| |||||||||||||||| ||||    
T  16594402 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcatttctc 16594447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 42446323 - 42446364
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  42446323 caaaagttgtcaaaaaatagttgttcaaatatcatttctcta 42446364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 1839367 - 1839399
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||| ||||||||||||||||    
T  1839367 aaagttgtcacaaaatggatgttcaaatatcat 1839399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6241666 - 6241626
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||| |||| ||||||||||||| |||||||||||||||    
T  6241666 ttgtcataaaaattgtcacaaaataaatgttcaaatatcat 6241626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 8675465 - 8675505
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||| ||||||||| |||||||||||||||| |||||    
T  8675465 caaaagttatcacaaaatggatgttcaaatatcatttctct 8675505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9581624 - 9581584
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||| |||| |||| ||||||||||||||||    
T  9581624 ttgtcacaaaagttatcactaaatggatgttcaaatatcat 9581584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 9977158 - 9977118
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  9977158 caaaagttgtcactaaatggatgttcaaatatcatttctct 9977118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10865362 - 10865314
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    |||||||||||||| |||||||||   |||||||||||||| |||||||    
T  10865362 ttgtcacaaaagttctcacaaaatgtttgttcaaatatcatttctctat 10865314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 21156031 - 21155987
Alignment:
Q  2 tgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||||||||| ||||| | |||||||||||||| ||||    
T  21156031 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 21155987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 23126375 - 23126415
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  23126375 caaaagttgtcactaaatggatgttcaaatatcatttctct 23126415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41173297 - 41173257
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||| ||||||||||||||||||| |||||| |||||||||    
T  41173297 ttgttacaaaagttgtcacaaaatggatgtttaaatatcat 41173257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37899368 - 37899321
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||    
T  37899368 ttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctcta 37899321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 44184585 - 44184631
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  44184585 ttgtcacaaaagttgtcgcaaaatagatgttcaaatatcatttctct 44184631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22638910 - 22638955
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||    
T  22638910 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctc 22638955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37899239 - 37899286
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  37899239 ttgtcacaaaaattgtcacaaaatggatgttcaaatatcatttctcta 37899286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41893960 - 41893909
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataat 52  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||| ||||    
T  41893960 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctctttaat 41893909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 43573575 - 43573614
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  43573575 caaaagttgtcacaaaatagatgttcaaatatcatttctc 43573614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 3937144 - 3937182
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  3937144 aaagttgtcacaaaatagatgttcaaatatcatttctct 3937182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 33224872 - 33224834
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  33224872 aaagttgtcacaaaatagatgttcaaatatcatttctct 33224834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 3219875 - 3219960
Alignment:
Q  127 attactctaactactcatatttaagaaactaaa-ataatattgaaattctacattgattca-atataaggtcatacaatgcttata 210  Q
    |||||||||||||||  ||| |||||||||||| |||||| | ||||||| |||| |||||  |||||||||||||||| ||||||    
T  3219875 attactctaactacttctatctaagaaactaaagataatactcaaattcttcattaattcatttataaggtcatacaattcttata 3219960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 13162958 - 13162918
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  13162958 caaaagttgtcactaaatagatgttcaaatatcatttctct 13162918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 13729765 - 13729725
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  13729765 caaaagttgtcacaaaatggatgttcaaatatcatttctct 13729725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 21822631 - 21822671
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  21822631 caaaaattgtcacaaaatagatgttcaaatatcatttctct 21822671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41018708 - 41018652
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataatttatt 57  Q
    |||||||||||||||||  ||||||| |||||||||||||| |||||| | ||||||    
T  41018708 ttgtcacaaaagttgtccaaaaatagttgttcaaatatcatttctctaaactttatt 41018652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47495016 - 47494964
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataatt 53  Q
    ||||||||||| ||||||| ||||||||||| ||||||||| |||| ||||||    
T  47495016 ttgtcacaaaaattgtcaccaaatagatgtttaaatatcatttctccataatt 47494964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33180736 - 33180783
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||| |||||||||||||||||  ||||||||||||||| ||||||    
T  33180736 ttgtcataaaagttgtcacaaaatgaatgttcaaatatcatttctcta 33180783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 47078273 - 47078312
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  47078273 aaagttgtcataaaatagatgttcaaatatcatttctcta 47078312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 11352996 - 11353034
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  11352996 aaagttgtcacaaaattgatgttcaaatatcatttctct 11353034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 11564932 - 11564898
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    ||||||||||||||||||| |||||||||||||||    
T  11564932 caaaagttgtcacaaaataaatgttcaaatatcat 11564898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12007212 - 12007258
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| | |||||||||||||| |||||    
T  12007212 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 12007258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35586799 - 35586845
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||| ||| ||||| |||||||||||||||| |||||    
T  35586799 ttgtcacaaaagttatcataaaatggatgttcaaatatcatttctct 35586845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 47448871 - 47448825
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| | |||||||||||||| |||||    
T  47448871 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 47448825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 10055662 - 10055703
Alignment:
Q  5 cacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||| |||||||||||||||||||| |||||||| ||||    
T  10055662 cacaaaaattgtcacaaaatagatgttcgaatatcatttctc 10055703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39332030 - 39331985
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| |||||||||||||| |||| |||||||||||||||| ||||    
T  39332030 ttgttacaaaagttgtcactaaatggatgttcaaatatcatttctc 39331985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 3062379 - 3062347
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||| ||||||||||||||||    
T  3062379 aaagttgtcacaaaatggatgttcaaatatcat 3062347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 7817686 - 7817654
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||| ||||||||||||||||    
T  7817686 aaagttgtcacaaaatggatgttcaaatatcat 7817654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10591081 - 10591041
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||| |||||||||||| |||||| ||||||||||||||    
T  10591081 ttgtcataaaagttgtcaccaaatagttgttcaaatatcat 10591041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 16980336 - 16980296
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  16980336 caaaagttgtcacaaaatgaatgttcaaatatcatttctct 16980296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 21559837 - 21559797
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||| ||| |||||||||||||||| |||||    
T  21559837 caaaagttgtcacagaatggatgttcaaatatcatttctct 21559797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 25887631 - 25887587
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctctataatt 53  Q
    |||||||||||||| | ||||| |||||||||| |||||||||||    
T  25887631 aaagttgtcacaaagtggatgtacaaatatcatttctctataatt 25887587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40417820 - 40417772
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||| |||||| ||||||| ||||||||||| || |||||||    
T  40417820 ttgtcacaaaaattgtcaaaaaatagttgttcaaatattatttctctat 40417772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 210
Target Start/End: Original strand, 3293326 - 3293433
Alignment:
Q  100 taggtgatgaatatcactcactactaaattactctaactactcatatttaagaaactaaa-ataatattgaaattctacattgattcaatataaggtcat 198  Q
    |||||||||||||| |   | |||||||||||||||||||||    | |||||||||||| |||||| ||||||||| |||||||| | ||| |||||||    
T  3293326 taggtgatgaatattatcaagtactaaattactctaactact----tctaagaaactaaagataatactgaaattcttcattgatttattatgaggtcat 3293421  T
Q  199 acaatgcttata 210  Q
    |||||| |||||    
T  3293422 acaatgtttata 3293433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 30036826 - 30036875
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctataatttat 56  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  30036826 caaaagttgtcactaaatagatgttcaaatatcatttctctatcatttat 30036875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35213587 - 35213632
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||    
T  35213587 ttgttacaaaagttgtcacaaaatagatgttcaaatatcatttctc 35213632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20822894 - 20822941
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  20822894 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctcta 20822941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15318214 - 15318260
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||    
T  15318214 ttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctct 15318260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32459543 - 32459589
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||    
T  32459543 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 32459589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33421805 - 33421759
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||    
T  33421805 ttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctct 33421759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8747214 - 8747169
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| ||||||||||||||||||| |||||| ||||||||||||||    
T  8747214 ttgtaacaaaagttgtcacaaaatggatgttaaaatatcatatctc 8747169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32046743 - 32046695
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    |||||||| ||||||| ||||||| |||||||||||||||| |||||||    
T  32046743 ttgtcacataagttgttacaaaattgatgttcaaatatcatttctctat 32046695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15368849 - 15368895
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||| ||||||||||| ||||||| |||||||||||||||| |||||    
T  15368849 ttgtaacaaaagttgttacaaaatggatgttcaaatatcatttctct 15368895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 28748161 - 28748123
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  28748161 aaagttgtcacaaaatggatgttcaaatatcatttctct 28748123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33651065 - 33651019
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||| || | |||||||||||||||||||||||| |||||    
T  33651065 ttgtcacaaaaattattacaaaatagatgttcaaatatcatttctct 33651019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34442089 - 34442135
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||||| || ||||||||||| |||||    
T  34442089 ttgtcacaaaagttgtcataaaatagttgctcaaatatcatttctct 34442135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6531209 - 6531254
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||| || ||||||||||||||| |||||||||||||||| ||||    
T  6531209 ttgtcccataagttgtcacaaaatggatgttcaaatatcatttctc 6531254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18141327 - 18141376
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctata 50  Q
    |||||||||||||||||| |||||  ||||| ||||||||| ||||||||    
T  18141327 ttgtcacaaaagttgtcataaaatgaatgtttaaatatcatttctctata 18141376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 27334898 - 27334857
Alignment:
Q  6 acaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||||||| ||| |||||||||| |||||    
T  27334898 acaaaagttgtcacaaaatagttgtacaaatatcatttctct 27334857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 27395638 - 27395597
Alignment:
Q  6 acaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||||||| ||| |||||||||| |||||    
T  27395638 acaaaagttgtcacaaaatagttgtacaaatatcatttctct 27395597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24900820 - 24900780
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||||| ||||| | ||||||||||||||    
T  24900820 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcat 24900780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28982665 - 28982705
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  28982665 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcat 28982705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46019507 - 46019461
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  46019507 ttgtcacaaaagttgtcgcaaaatagatgttcaaatatcatttctct 46019461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49417620 - 49417574
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||    
T  49417620 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctct 49417574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8821675 - 8821628
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  8821675 ttgttacaaaagttgtcactaaatagatgttcaaatatcatttctcta 8821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 21005198 - 21005237
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  21005198 aaagttgtcacaaaatagatgttcaaatatcatttctcta 21005237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21196169 - 21196123
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||    
T  21196169 ttgtcacagaagttgtcacaaaatggatgttcaaatatcatttctct 21196123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30567986 - 30568031
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||| |||||||||||||||||| ||||||||||||||| ||||    
T  30567986 ttgtcataaaagttgtcacaaaataaatgttcaaatatcatttctc 30568031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37927231 - 37927276
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||    
T  37927231 ttgtcacaaaagttgtcaccaaatggatgttcaaatatcatttctc 37927276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 50207002 - 50207043
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  50207002 caaaagttgtcacaaaatggatgttcaaatatcatttctcta 50207043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50638375 - 50638420
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  50638375 ttgtcacaaaaattgtcaccaaatagatgttcaaatatcatttctc 50638420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 55400044 - 55399999
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||    
T  55400044 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 55399999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31376791 - 31376831
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  31376791 ttgtaacaaaagttgtcacaaaatggatgttcaaatatcat 31376831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 32146015 - 32146067
Alignment:
Q  4 tcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataatttat 56  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||| ||| ||||    
T  32146015 tcacaaaagttgtcaaaaaatagttgttcaaatatcatttctctttaacttat 32146067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 39671130 - 39671170
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  39671130 caaaagttgtcactaaatagatgttcaaatatcatttctct 39671170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10811180 - 10811133
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||||||||| ||||| | |||||||||||||| ||||||    
T  10811180 ttgtcacaaaagttgtcataaaatggttgttcaaatatcatttctcta 10811133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 24482995 - 24483034
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  24482995 caaaagttgtcacaaaatggatgttcaaatatcatttctc 24483034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37410929 - 37410882
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||| |||||| |||||| ||||||||||||||| ||||||    
T  37410929 ttgtcacaaaaattgtcaaaaaataaatgttcaaatatcatttctcta 37410882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 51343453 - 51343414
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatca 40  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  51343453 ttgtcacaaaagttgtcatcaaatagatgttcaaatatca 51343414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 3281738 - 3281776
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  3281738 aaagttgtcacaaaataaatgttcaaatatcatttctct 3281776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33976420 - 33976466
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||| ||||||||| ||||||| |||||||||||||||| |||||    
T  33976420 ttgtcataaaagttgttacaaaatggatgttcaaatatcatttctct 33976466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 38944172 - 38944222
Alignment:
Q  6 acaaaagttgtcacaaaatagatgttcaaatatcatatctctataatttat 56  Q
    ||||||||||||||||| ||| ||| |||||||||| ||||||| ||||||    
T  38944172 acaaaagttgtcacaaattagttgtacaaatatcatttctctattatttat 38944222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 49761356 - 49761318
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  49761356 aaagttgtcacaaaatggatgttcaaatatcatttctct 49761318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 50559238 - 50559284
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||||| ||| |||||||||| |||||    
T  50559238 ttgtcacaaaagttgtcaaaaaatagttgtacaaatatcatttctct 50559284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 51465936 - 51465974
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  51465936 aaagtggtcacaaaatagatgttcaaatatcatttctct 51465974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14207284 - 14207329
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||| ||||||| | |||||||||||||| ||||    
T  14207284 ttgtcacaaaagttgttacaaaatcgttgttcaaatatcatttctc 14207329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14215032 - 14215077
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||| ||||||| | |||||||||||||| ||||    
T  14215032 ttgtcacaaaagttgttacaaaatcgttgttcaaatatcatttctc 14215077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34057979 - 34058024
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  34057979 ttgtcacaaaagttatcataaaatggatgttcaaatatcatttctc 34058024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 44677516 - 44677557
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||| |||| |||||||||||||||| ||||||    
T  44677516 caaaagttgtcactaaatggatgttcaaatatcatttctcta 44677557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45055019 - 45054974
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| ||||||||||||| ||||| |||||||||||||||| ||||    
T  45055019 ttgtaacaaaagttgtcagaaaatggatgttcaaatatcatttctc 45054974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 51873438 - 51873393
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||| |||| |||||||||||||| |||||||||||||| ||||    
T  51873438 ttgtcataaaaattgtcacaaaatagttgttcaaatatcatttctc 51873393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 10207005 - 10207045
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  10207005 caaaagttgtcactaaatggatgttcaaatatcatttctct 10207045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21195917 - 21195957
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    ||||||||||||||||||| |||| |||| |||||||||||    
T  21195917 ttgtcacaaaagttgtcaccaaatggatgctcaaatatcat 21195957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26645071 - 26645023
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||| |||||||| ||| ||||||| |||||||||||||| |||||||    
T  26645071 ttgtcgcaaaagttatcataaaataggtgttcaaatatcatttctctat 26645023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31425579 - 31425539
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  31425579 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcat 31425539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31931045 - 31931085
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  31931045 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcat 31931085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37143166 - 37143126
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  37143166 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcat 37143126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 48281888 - 48281920
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcat 41  Q
    ||||||||||||||||| |||||||||||||||    
T  48281888 aaagttgtcacaaaatatatgttcaaatatcat 48281920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 49167795 - 49167755
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    ||||||||||||||||||  |||| ||||||||||||||||    
T  49167795 ttgtcacaaaagttgtcatcaaatggatgttcaaatatcat 49167755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 54195388 - 54195348
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||| |||| |||||||||||||||| |||||||    
T  54195388 aaagttgtcactaaatggatgttcaaatatcatttctctat 54195348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 54694145 - 54694185
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||| |||||||||||||||| |||||||||||| |||||    
T  54694145 caaaaattgtcacaaaatagatattcaaatatcatttctct 54694185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1816026 - 1816071
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  1816026 ttgtcacaaaaattgtcacaaaatagatgttcaaatatcatttctc 1816071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2401655 - 2401615
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  2401655 ttgtcacaaaagttgtcacaaaatggatgttcaaatatcat 2401615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 624344 - 624385
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  624344 caaaagttgtcactaaatagatgttcaaatatcatttctcta 624385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 13263429 - 13263462
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatca 40  Q
    ||||||||||||||||||||||||||||||||||    
T  13263429 caaaagttgtcacaaaatagatgttcaaatatca 13263462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30170046 - 30170083
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatat 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  30170046 ttgtcacaaaagttgtcataaaatagatgttcaaatat 30170083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4914951 - 4914899
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataatt 53  Q
    |||||| |||| |||||||||||||| |||||||||||||| |||||| ||||    
T  4914951 ttgtcataaaaattgtcacaaaatagttgttcaaatatcatttctctaaaatt 4914899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 22819688 - 22819648
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  22819688 caaaagttgtcacaaaatggatgttcaaatatcatttctct 22819648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 51852121 - 51852066
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataatttatt 57  Q
    ||||||||||| || |||||||||| ||||||||||||||| |||||| ||||||||    
T  51852121 ttgtcacaaaaattctcacaaaataaatgttcaaatatcatttctcta-aatttatt 51852066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9362704 - 9362751
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||||||||  |||| |||||||||||||||| ||||||    
T  9362704 ttgtcacaaaagttgtcattaaatggatgttcaaatatcatttctcta 9362751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 14010151 - 14010190
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  14010151 aaaagttgtcacaaaatggatgttcaaatatcatttctct 14010190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 31657695 - 31657656
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  31657695 aaagttgtcacaaaatggatgttcaaatatcatttctcta 31657656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 33278713 - 33278674
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  33278713 aaaagttgtcacaaaatagttgttcaaatatcatttctct 33278674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 51887702 - 51887663
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  51887702 caaaagttgtcacaaaatggatgttcaaatatcatttctc 51887663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 53654776 - 53654823
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||||||    
T  53654776 ttgtcacaaaaattatcataaaatagatgttcaaatatcatttctcta 53654823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2256356 - 2256402
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||||||||  |||||||||||||| |||||| |||||    
T  2256356 ttgtcacaaaagttgtcatcaaatagatgttcaattatcatttctct 2256402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2999157 - 2999111
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  2999157 ttgtcacaaaaattgtcataaaatggatgttcaaatatcatttctct 2999111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4915699 - 4915745
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||| |||| |||||||||||| |||||||||||||||| |||||    
T  4915699 ttgtcataaaaattgtcacaaaatggatgttcaaatatcatttctct 4915745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 14527683 - 14527649
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||||| ||||||||||||||||    
T  14527683 caaaagttgtcacaaaatggatgttcaaatatcat 14527649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 27408191 - 27408153
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  27408191 aaagttgtcgcaaaatagatgttcaaatatcatttctct 27408153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 28657463 - 28657501
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  28657463 aaagttgtcacaaaatggatgttcaaatatcatttctct 28657501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 30079885 - 30079843
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||||||||||| |||| |||||||||||||||| |||||||    
T  30079885 caaaagttgtcactaaatggatgttcaaatatcatttctctat 30079843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 35017191 - 35017149
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcatatctctata 50  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||    
T  35017191 aaaagttgtcacaaaatagttgtacaaatatcatttctctata 35017149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37514158 - 37514204
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| ||||||| ||||| |||||||||| |||||    
T  37514158 ttgtcacaaaagttgttacaaaatggatgtacaaatatcatttctct 37514204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 39345012 - 39345054
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    ||||| |||||||||||| |||||||||||||||| |||||||    
T  39345012 caaaaattgtcacaaaatggatgttcaaatatcatttctctat 39345054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42815449 - 42815403
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| ||||||||| ||| |||||||||| |||||    
T  42815449 ttgtcacaaaagttgttacaaaatagttgtacaaatatcatttctct 42815403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 43769760 - 43769722
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  43769760 aaagttgtcacaaaatggatgttcaaatatcatttctct 43769722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 45083022 - 45082973
Alignment:
Q  4 tcacaaaagttgtcacaaaatagatgttcaaatatcatatctctataattt 54  Q
    ||||||||||||||| ||||| | |||||||||||||| ||||||||||||    
T  45083022 tcacaaaagttgtca-aaaatggttgttcaaatatcatttctctataattt 45082973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 51225551 - 51225597
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||| |||| || |||||||||||||||||||||||||| |||||    
T  51225551 ttgtcataaaaattatcacaaaatagatgttcaaatatcatttctct 51225597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 51255791 - 51255745
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| | |||||||||||||| |||||    
T  51255791 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 51255745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 56557778 - 56557732
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||||| ||||| | |||||||||||||| |||||    
T  56557778 ttgtcacaaaagttgtcataaaattgttgttcaaatatcatttctct 56557732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 9234359 - 9234260
Alignment:
Q  100 taggtgatgaatatcactcactactaaattactctaactact---catatttaagaaactaaaataatattgaaattctacattgattcaatataaggtc 196  Q
    |||||||| |||||||   | ||||||||||||||||  |||   ||||| ||| |||||||||||| | ||||||| | |||||||||| |||||||||    
T  9234359 taggtgataaatatcatcaagtactaaattactctaatgactgttcatatctaacaaactaaaataacactgaaattgttcattgattcattataaggtc 9234260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14593873 - 14593828
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  14593873 ttgtaacaaaagttgtcacaaaatggatattcaaatatcatttctc 14593828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18883001 - 18883046
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||||||||  ||||||||||||||||| ||||| ||||    
T  18883001 ttgtcacaaaagttgtagcaaaatagatgttcaaaaatcatttctc 18883046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21617228 - 21617183
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| |||||| |||||||||||| |||||||||||||||| ||||    
T  21617228 ttgtaacaaaaattgtcacaaaatggatgttcaaatatcatttctc 21617183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32546383 - 32546428
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| |||||| ||||||||||||| ||||||||||||||| ||||    
T  32546383 ttgtaacaaaaattgtcacaaaataaatgttcaaatatcatttctc 32546428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33860692 - 33860647
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||| ||||||| |||| |||||||||||||||| ||||    
T  33860692 ttgtcacaaaaattgtcaccaaatggatgttcaaatatcatttctc 33860647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 39312638 - 39312675
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  39312638 aaagttgtcactaaatagatgttcaaatatcatttctc 39312675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 41486175 - 41486224
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctataatttat 56  Q
    |||||||| |||| |||| |||||||||||||||| ||||| ||||||||    
T  41486175 caaaagttatcactaaatggatgttcaaatatcatttctctgtaatttat 41486224  T

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Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 41495052 - 41495007
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctataat 52  Q
    |||||||||||||| ||||| ||| |||||||||| ||||||||||    
T  41495052 caaaagttgtcacataatagttgtacaaatatcatttctctataat 41495007  T

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Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 56271405 - 56271360
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  56271405 ttgtcacaaaagttatcataaaatggatgttcaaatatcatttctc 56271360  T

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Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 22257229 - 22257269
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||||| ||| |||||||||||||| ||||||    
T  22257229 aaaagttgtcacaaagtagttgttcaaatatcatttctcta 22257269  T

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Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 29974350 - 29974382
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||||| ||||||||||||||    
T  29974350 aaagttgtcacaaaatagttgttcaaatatcat 29974382  T

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Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 36111428 - 36111472
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctataa 51  Q
    |||||||||| || |||| |||||||||||||||| |||||||||    
T  36111428 caaaagttgttactaaatggatgttcaaatatcatttctctataa 36111472  T

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Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45851805 - 45851757
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctctat 49  Q
    |||| |||||| |||||| ||||| |||||||||||||||| |||||||    
T  45851805 ttgtaacaaaaattgtcataaaattgatgttcaaatatcatttctctat 45851757  T

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Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 47014977 - 47014937
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||||||||| ||| |||||||||| ||||||    
T  47014977 aaaagttgtcacaaaatagttgtacaaatatcatttctcta 47014937  T

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Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 51359821 - 51359865
Alignment:
Q  6 acaaaagttgtcacaaaatagatgttcaaatatcatatctctata 50  Q
    ||||||||||||||||||| | ||| |||||||||| ||||||||    
T  51359821 acaaaagttgtcacaaaatggttgtacaaatatcatttctctata 51359865  T

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Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 54802698 - 54802730
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcat 41  Q
    |||||||||||||||| ||||||||||||||||    
T  54802698 aaagttgtcacaaaatggatgttcaaatatcat 54802730  T

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Target: scaffold1064 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 616 - 512
Alignment:
Q  100 taggtgatgaatatcactcactactaaattactctaactactcatatttaagaaactaaaataatattgaaattctacattgattcaatataaggtcata 199  Q
    |||||||||||||||||  | |||||||| ||||||||||||  |||       |||||||||||||||||||| | |||||  ||| ||||||||| ||    
T  616 taggtgatgaatatcaccgagtactaaataactctaactacttctatc------actaaaataatattgaaatttttcattgtatcattataaggtctta 523  T
Q  200 caatgcttata 210  Q
    |||||||||||    
T  522 caatgcttata 512  T

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Target: scaffold0532 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11009 - 10964
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||    
T  11009 ttgtcacaaaagttgtcccaaaatggatgttcaaatatcatttctc 10964  T

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Target: scaffold0321 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 19675 - 19631
Alignment:
Q  7 caaaagttgtcacaaaatagatgttcaaatatcatatctctataa 51  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||    
T  19675 caaaagttgtcactaaatggatgttcaaatatcatttctctataa 19631  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 44823 - 44785
Alignment:
Q  9 aaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  44823 aaagttgtcacaaaatggatgttcaaatatcatttctct 44785  T

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Target: scaffold0135 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 40224 - 40125
Alignment:
Q  100 taggtgatgaatatcactcactactaaattactctaactact---catatttaagaaactaaaataatattgaaattctacattgattcaatataaggtc 196  Q
    |||||||| |||||||   | ||||||||||||||||  |||   ||||| ||| |||||||||||| | ||||||| | |||||||||| |||||||||    
T  40224 taggtgataaatatcatcaagtactaaattactctaatgactgttcatatctaacaaactaaaataacactgaaattgttcattgattcattataaggtc 40125  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 204476 - 204517
Alignment:
Q  6 acaaaagttgtcacaaaatagatgttcaaatatcatatctct 47  Q
    ||||||||||||| ||||||||||| |||||||||| |||||    
T  204476 acaaaagttgtcagaaaatagatgtacaaatatcatttctct 204517  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 223505 - 223550
Alignment:
Q  1 ttgtcacaaaagttgtcacaaaatagatgttcaaatatcatatctc 46  Q
    |||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  223505 ttgtaacaaaagttgtcacaaaatggatattcaaatatcatttctc 223550  T

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Target: scaffold0662 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 1116 - 1076
Alignment:
Q  8 aaaagttgtcacaaaatagatgttcaaatatcatatctcta 48  Q
    ||||||||||||||||||| ||| |||||||||| ||||||    
T  1116 aaaagttgtcacaaaatagttgtacaaatatcatttctcta 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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