View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_high_10 (Length: 457)
Name: NF10829A_high_10
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 24400385 - 24400640
Alignment:
| Q |
7 |
gaaaatcaactattacccaccatgtccagttcctgatcttgttctaggtgtgcctccacatacagatatgtcttttcttaccattttggtccctaatgaa |
106 |
Q |
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| T |
24400385 |
gaaaatcaactattacccaccatgtccagttcctgatcttgttctaggtgtgcctccacacacagatatgtcttttcttaccattttggtccctaatgaa |
24400484 |
T |
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| Q |
107 |
gtgcagggccttcaagcctctagagatggtcaatggtatgatgttaagtatgtccctaatgcccttgtcattcacattggtgaccaaatggaggtatg-- |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24400485 |
gtgcagggccttcaagcctctagagatggtcaatggtatgatgttaagtatgtccctaatgcccttgtcattcacattggtgaccaaatggaggtatgta |
24400584 |
T |
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| Q |
205 |
------tatatatatacatcttatctttctatactaattcatgaaagtataagcat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24400585 |
tatatatatatatatacatcttatctttctatactaattcatgaaaatataagcat |
24400640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 24407199 - 24407401
Alignment:
| Q |
7 |
gaaaatcaactattacccaccatgtccagttcctgatcttgttctaggtgtgcctccacatacagatatgtcttttcttaccattttggtccctaatgaa |
106 |
Q |
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| T |
24407199 |
gaaaatcaattactacccaccatgtccatgtcctgatctggtactaggtgtgccaccacacacagatatgtgttatattacccttctcatacccaatgaa |
24407298 |
T |
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| Q |
107 |
gtgcagggccttcaagcctctagagatggtcaatggtatgatgttaagtatgtccctaatgcccttgtcattcacattggtgaccaaatggaggtatgta |
206 |
Q |
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| T |
24407299 |
gtggagggtcttcaagcctctagagatggtcaatggtatgatgttaagtatgtccccaatgccctcattattcacgttggtgaccaaatgcaggtatgta |
24407398 |
T |
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| Q |
207 |
tat |
209 |
Q |
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||| |
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| T |
24407399 |
tat |
24407401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 24400658 - 24400723
Alignment:
| Q |
246 |
tataagcatcaattgaatgttaatgagaataaatatgagagagatgtatttgatattgttgtataa |
311 |
Q |
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| T |
24400658 |
tataagcatcaattgaatgttaatgagaataaatatgagagagatgtccttgatattgttgtataa |
24400723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 8968655 - 8968687
Alignment:
| Q |
253 |
atcaattgaatgttaatgagaataaatatgaga |
285 |
Q |
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| T |
8968655 |
atcaattgaatgttaatgagaataaataagaga |
8968687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 32770290 - 32770487
Alignment:
| Q |
11 |
atcaactattacccaccatgtccagttcctgatcttgttctaggtgtgcctccacatacagatatgtcttttcttaccattttggtccctaatgaagtgc |
110 |
Q |
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||||||||||||||||| || || ||||||||||||||| ||||| || | ||| |||| |||| |||| | || || | ||||| ||||| || | |
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| T |
32770290 |
atcaactattacccaccttgcccctgtcctgatcttgttcttggtgttccagctcattcagacatgtgttttatcacgcttcttgtcccaaatgatgttc |
32770389 |
T |
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| Q |
111 |
agggccttcaagcctctagagatggtcaatggtatgatgttaagtatgtccctaatgcccttgtcattcacattggtgaccaaatggaggtatgtata |
208 |
Q |
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| T |
32770390 |
aaggtcttcaagcctctagagatggacaatggtacgatgttaagtatgtcccctcggcttttgtaattcacattggcgaccaactggaggtatatata |
32770487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 2353382 - 2353311
Alignment:
| Q |
327 |
atacaactctatcaacatcttccgttgacaattcgtatgaaacctgcaaaataataaaccgatatataacct |
398 |
Q |
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| T |
2353382 |
atacaactctatcaacattctccaccaacaactcatatgtaacctgcaaaataataaaccgttatataacct |
2353311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 8388379 - 8388451
Alignment:
| Q |
326 |
gatacaactctatcaacatcttccgttgacaattcgtatgaaacctgcaaaataataaaccgatatataacct |
398 |
Q |
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| T |
8388379 |
gatacaactctatcaacatcttccattaacaactcatatataacttgcaaaataataaaccgttatataacct |
8388451 |
T |
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