View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_high_14 (Length: 400)

Name: NF10829A_high_14
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_high_14
NF10829A_high_14
[»] chr2 (37 HSPs)
chr2 (9-400)||(2964465-2964855)
chr2 (284-362)||(5902481-5902557)
chr2 (267-358)||(39622017-39622108)
chr2 (275-361)||(28803451-28803537)
chr2 (273-362)||(4350752-4350841)
chr2 (272-360)||(13866942-13867030)
chr2 (273-385)||(15120222-15120334)
chr2 (297-392)||(787364-787459)
chr2 (334-391)||(1647269-1647326)
chr2 (289-390)||(35485951-35486052)
chr2 (275-391)||(40158751-40158867)
chr2 (274-390)||(43456627-43456743)
chr2 (266-388)||(44438753-44438873)
chr2 (273-359)||(12140597-12140683)
chr2 (268-362)||(12313087-12313181)
chr2 (273-391)||(43529777-43529895)
chr2 (305-362)||(1801730-1801787)
chr2 (273-362)||(8017496-8017585)
chr2 (266-310)||(6772445-6772489)
chr2 (267-311)||(10563473-10563517)
chr2 (273-391)||(40837356-40837472)
chr2 (266-301)||(26202151-26202186)
chr2 (308-391)||(28039286-28039369)
chr2 (286-361)||(29430821-29430896)
chr2 (272-358)||(22878164-22878250)
chr2 (325-391)||(28677630-28677696)
chr2 (313-391)||(38809359-38809437)
chr2 (265-302)||(9478079-9478116)
chr2 (273-346)||(39983423-39983496)
chr2 (338-391)||(41817201-41817254)
chr2 (273-346)||(43259913-43259986)
chr2 (313-390)||(43530070-43530147)
chr2 (325-361)||(1494417-1494453)
chr2 (275-363)||(6209580-6209668)
chr2 (271-311)||(9886418-9886458)
chr2 (343-391)||(29316764-29316812)
chr2 (275-351)||(42852623-42852699)
[»] chr1 (36 HSPs)
chr1 (273-391)||(33723301-33723419)
chr1 (268-391)||(7217988-7218111)
chr1 (273-391)||(6292526-6292643)
chr1 (266-385)||(24460313-24460438)
chr1 (285-391)||(31517671-31517777)
chr1 (273-362)||(43420320-43420409)
chr1 (273-357)||(4033936-4034020)
chr1 (273-361)||(34536221-34536309)
chr1 (286-392)||(35925722-35925829)
chr1 (284-391)||(37593614-37593721)
chr1 (267-391)||(10199321-10199445)
chr1 (275-359)||(51929383-51929467)
chr1 (276-391)||(7136920-7137035)
chr1 (286-361)||(49691985-49692059)
chr1 (284-362)||(38170620-38170698)
chr1 (306-391)||(4576838-4576923)
chr1 (275-356)||(5157140-5157221)
chr1 (269-348)||(5886907-5886982)
chr1 (328-389)||(37811887-37811948)
chr1 (285-361)||(24279812-24279888)
chr1 (335-391)||(31118076-31118132)
chr1 (275-362)||(4757400-4757487)
chr1 (266-361)||(23373225-23373320)
chr1 (285-360)||(28837284-28837358)
chr1 (299-354)||(43371836-43371891)
chr1 (332-382)||(14332024-14332074)
chr1 (273-315)||(52013996-52014038)
chr1 (285-358)||(2295163-2295235)
chr1 (266-311)||(4276562-4276607)
chr1 (325-385)||(4481969-4482029)
chr1 (272-384)||(4549888-4550000)
chr1 (279-391)||(10280682-10280794)
chr1 (270-362)||(15489020-15489112)
chr1 (327-391)||(25479614-25479678)
chr1 (273-361)||(32515360-32515448)
chr1 (266-354)||(36070251-36070339)
[»] chr7 (26 HSPs)
chr7 (270-359)||(23214920-23215009)
chr7 (267-392)||(33894659-33894784)
chr7 (285-386)||(36598287-36598388)
chr7 (275-391)||(28727684-28727800)
chr7 (304-362)||(36537970-36538028)
chr7 (285-362)||(8094368-8094445)
chr7 (273-390)||(30535597-30535714)
chr7 (275-359)||(3836604-3836688)
chr7 (273-391)||(22387815-22387933)
chr7 (267-319)||(17988946-17988998)
chr7 (276-343)||(529443-529510)
chr7 (267-362)||(9038173-9038268)
chr7 (273-351)||(6977489-6977567)
chr7 (284-354)||(22759231-22759301)
chr7 (273-362)||(25511688-25511778)
chr7 (284-362)||(25670516-25670594)
chr7 (272-318)||(30751625-30751671)
chr7 (273-323)||(40598404-40598454)
chr7 (334-384)||(43219624-43219674)
chr7 (306-354)||(13960675-13960723)
chr7 (267-391)||(25596066-25596189)
chr7 (273-305)||(31744921-31744953)
chr7 (267-311)||(33266399-33266443)
chr7 (263-303)||(34083517-34083557)
chr7 (335-383)||(43219785-43219833)
chr7 (284-328)||(46055914-46055958)
[»] chr8 (35 HSPs)
chr8 (268-362)||(16162822-16162916)
chr8 (266-391)||(7646239-7646364)
chr8 (267-391)||(9700034-9700158)
chr8 (278-391)||(6950355-6950468)
chr8 (267-362)||(2487921-2488016)
chr8 (279-362)||(39881646-39881729)
chr8 (266-332)||(14926894-14926960)
chr8 (270-361)||(34770931-34771022)
chr8 (269-391)||(34849136-34849259)
chr8 (286-372)||(2213460-2213546)
chr8 (333-391)||(10383918-10383976)
chr8 (273-342)||(10075472-10075541)
chr8 (273-391)||(12851209-12851329)
chr8 (273-362)||(37461204-37461292)
chr8 (284-353)||(39389106-39389175)
chr8 (273-391)||(42215219-42215343)
chr8 (286-359)||(45098905-45098978)
chr8 (275-315)||(2493045-2493085)
chr8 (334-386)||(3254263-3254315)
chr8 (286-354)||(7918713-7918781)
chr8 (266-310)||(31168115-31168159)
chr8 (273-385)||(43368619-43368731)
chr8 (268-323)||(10437984-10438039)
chr8 (268-330)||(7714336-7714398)
chr8 (337-391)||(9835883-9835937)
chr8 (325-359)||(10120822-10120856)
chr8 (295-361)||(11569398-11569464)
chr8 (279-329)||(27465446-27465496)
chr8 (273-311)||(42893409-42893447)
chr8 (285-391)||(43504784-43504890)
chr8 (273-391)||(44236742-44236860)
chr8 (266-323)||(1117408-1117465)
chr8 (275-332)||(1561369-1561426)
chr8 (273-330)||(1892143-1892200)
chr8 (334-391)||(2458546-2458603)
[»] chr3 (30 HSPs)
chr3 (268-362)||(44014712-44014806)
chr3 (273-362)||(41164909-41164998)
chr3 (273-384)||(45541611-45541722)
chr3 (296-357)||(3776332-3776393)
chr3 (273-391)||(21574523-21574643)
chr3 (272-361)||(21872213-21872302)
chr3 (334-391)||(49465645-49465702)
chr3 (273-354)||(50211805-50211886)
chr3 (263-391)||(20210837-20210965)
chr3 (263-362)||(2100088-2100187)
chr3 (286-360)||(19679260-19679334)
chr3 (296-362)||(50015948-50016014)
chr3 (285-362)||(2304202-2304279)
chr3 (273-361)||(2413598-2413686)
chr3 (335-391)||(5391912-5391968)
chr3 (275-359)||(20194954-20195038)
chr3 (284-340)||(45783329-45783385)
chr3 (268-383)||(30573829-30573943)
chr3 (273-391)||(50952366-50952485)
chr3 (325-392)||(53952080-53952147)
chr3 (313-391)||(14548680-14548758)
chr3 (273-311)||(24684741-24684779)
chr3 (281-343)||(25925810-25925872)
chr3 (334-384)||(39723220-39723270)
chr3 (273-318)||(40240740-40240785)
chr3 (278-387)||(41644369-41644478)
chr3 (337-389)||(27290884-27290936)
chr3 (340-392)||(38318992-38319044)
chr3 (335-383)||(39723381-39723429)
chr3 (280-316)||(39769645-39769681)
[»] chr5 (31 HSPs)
chr5 (286-391)||(37611147-37611252)
chr5 (286-391)||(37787877-37787982)
chr5 (273-392)||(499650-499769)
chr5 (273-391)||(11297115-11297233)
chr5 (277-391)||(38728435-38728549)
chr5 (278-391)||(8089969-8090082)
chr5 (273-391)||(17368709-17368823)
chr5 (335-391)||(3977341-3977397)
chr5 (266-362)||(11714776-11714872)
chr5 (286-361)||(11095427-11095502)
chr5 (271-362)||(18857316-18857406)
chr5 (285-391)||(10125649-10125755)
chr5 (273-391)||(25720336-25720454)
chr5 (274-323)||(13508541-13508590)
chr5 (274-343)||(21782576-21782645)
chr5 (286-391)||(41112830-41112935)
chr5 (266-354)||(14599284-14599372)
chr5 (283-346)||(12407659-12407722)
chr5 (274-361)||(26516470-26516557)
chr5 (261-392)||(36318806-36318937)
chr5 (320-391)||(37526165-37526236)
chr5 (320-391)||(37690602-37690673)
chr5 (285-359)||(2568723-2568797)
chr5 (273-355)||(11104974-11105056)
chr5 (285-391)||(17258814-17258920)
chr5 (273-362)||(12459920-12460009)
chr5 (273-318)||(17369309-17369354)
chr5 (338-391)||(36638780-36638833)
chr5 (274-390)||(37954720-37954837)
chr5 (305-357)||(4273328-4273380)
chr5 (267-311)||(39594920-39594964)
[»] chr4 (35 HSPs)
chr4 (273-362)||(7367973-7368062)
chr4 (273-356)||(47399553-47399636)
chr4 (290-363)||(46247266-46247339)
chr4 (279-391)||(45128235-45128347)
chr4 (279-390)||(46090738-46090850)
chr4 (279-390)||(2996607-2996718)
chr4 (313-392)||(48719350-48719429)
chr4 (273-391)||(27123271-27123389)
chr4 (273-359)||(28615400-28615485)
chr4 (286-391)||(30207503-30207608)
chr4 (290-363)||(46013249-46013322)
chr4 (268-391)||(28300213-28300336)
chr4 (308-381)||(4071921-4071994)
chr4 (287-356)||(18628486-18628555)
chr4 (275-391)||(1137745-1137861)
chr4 (267-343)||(29126176-29126252)
chr4 (335-390)||(43886112-43886167)
chr4 (341-392)||(44249317-44249368)
chr4 (263-362)||(52172787-52172886)
chr4 (273-323)||(18512434-18512484)
chr4 (275-361)||(24160450-24160536)
chr4 (273-363)||(31708768-31708858)
chr4 (271-317)||(46187826-46187872)
chr4 (310-388)||(50799986-50800064)
chr4 (271-357)||(55870259-55870345)
chr4 (273-318)||(24193638-24193683)
chr4 (284-361)||(24370881-24370958)
chr4 (273-358)||(39178185-39178270)
chr4 (285-362)||(42641570-42641647)
chr4 (314-362)||(1554968-1555016)
chr4 (273-361)||(6428081-6428169)
chr4 (270-362)||(10172124-10172216)
chr4 (335-391)||(20936210-20936266)
chr4 (296-356)||(22523748-22523808)
chr4 (334-390)||(22662227-22662283)
[»] chr6 (23 HSPs)
chr6 (307-391)||(32171336-32171420)
chr6 (299-390)||(32577931-32578022)
chr6 (270-360)||(2455874-2455964)
chr6 (273-391)||(2460070-2460188)
chr6 (275-362)||(26559160-26559247)
chr6 (308-362)||(769200-769254)
chr6 (272-362)||(2263254-2263344)
chr6 (334-391)||(31624123-31624180)
chr6 (270-391)||(34403888-34404009)
chr6 (268-391)||(33080492-33080615)
chr6 (334-384)||(696642-696692)
chr6 (270-391)||(8420112-8420234)
chr6 (325-391)||(13908496-13908562)
chr6 (272-362)||(33089568-33089658)
chr6 (273-318)||(13908346-13908391)
chr6 (305-362)||(24838704-24838761)
chr6 (284-385)||(33911212-33911313)
chr6 (335-383)||(696483-696531)
chr6 (307-391)||(725608-725692)
chr6 (266-362)||(740798-740894)
chr6 (273-317)||(4516066-4516110)
chr6 (275-323)||(12111068-12111116)
chr6 (313-361)||(33116647-33116695)
[»] scaffold0608 (1 HSPs)
scaffold0608 (325-385)||(9608-9668)


Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 9 - 400
Target Start/End: Original strand, 2964465 - 2964855
Alignment:
Q  9 atcatagaaagctagcgtgtttttgcataagctactataaaatcaccatggttcacagtcattctagcaaacccagtgatgataaacatgcacgtaaagg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2964465 atcatagaaagctagcgtgtttttgcataagctactataaaatcaccatggttcacagtcattctagcaaactcagtgatgataaacatgcacgtaaagg 2964564  T
Q  109 atccattccaaacacgtcatttccacataataatgatctaaaaatgacattatcccattcaaatactcttcctatgtacttttcatttaacctaccatgt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2964565 atccattccaaacacgtcatttccacataataatgatctaaaaatgacattatcccattcaaatactcttcctatgtacttt-catttaacctaccatgt 2964663  T
Q  209 aataagtcaatagatgctcaaacctttttcatttttaaaactcagaaaaccaatacctagggcatgtttggattaacttatttgaacttatctaccggca 308  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2964664 aataagtcaatagatgctcaaaactttttcatttttaaaactcagaaaaccaatacctagggcatgtttggattaacttatttgaacttatctaccggca 2964763  T
Q  309 taaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataaaaattcata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2964764 taaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataaaaattcata 2964855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 5902481 - 5902557
Alignment:
Q  284 acttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||||||||||||||  |||||||||||||| |||| ||||||   |||||||||||||||||||||||||||||    
T  5902481 acttatttgaacttatcta--ggcataaacacttgtgagactgtttggaagaacttatgaaaacagcttatgacatgtt 5902557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 358
Target Start/End: Complemental strand, 39622108 - 39622017
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgaca 358  Q
    ||||| ||| |||||| ||||||||||||||||||||  | |||| ||||||||| | |||||||| ||||||||||||||| |||||||||    
T  39622108 agggcctgtctggatttacttatttgaacttatctacttgtataagcacttgcgacactgtttgagagaacttatgaaaacaacttatgaca 39622017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 28803451 - 28803537
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||||| |||||||||| ||||||||||||||||| ||| || |||| |||||||| |||| |||| ||||| ||||||||||||    
T  28803451 tttggattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacatgt 28803537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 4350841 - 4350752
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||||  ||||||||| ||| ||||| | ||||| |||||  |||| |||||||| |||||||||||||||||||||||||||||    
T  4350841 tgtttggattggcttatttgagcttctctactgacataagcacttaagagattgtttgagagaacttatgaaaacagcttatgacatgtt 4350752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 13867030 - 13866942
Alignment:
Q  272 atgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatg 360  Q
    ||||||||||| || ||||||| ||||||||| | |||||||||||| |||| |||||||| ||||||| ||||||| | |||||||||    
T  13867030 atgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaacaacctatgacatg 13866942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 385
Target Start/End: Complemental strand, 15120334 - 15120222
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||||||| ||||||||||||||||||||  ||||||||| ||| ||   |||||| | || |||||| ||||| |||||||||||||  |||||| |    
T  15120334 tgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgttcattagctgt 15120235  T
Q  373 tttcagcttattt 385  Q
    ||| |||||||||    
T  15120234 tttaagcttattt 15120222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 392
Target Start/End: Complemental strand, 787459 - 787364
Alignment:
Q  297 tatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataaa 392  Q
    ||||||| ||||||| |||||| || | |||||| | ||||||||||||||||||||||||||||   | |||| |||||||||||| ||||||||    
T  787459 tatctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgttttcagcttatctccataaa 787364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 1647326 - 1647269
Alignment:
Q  334 gaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    ||||||||||||||||||||||||||| |  | |||| ||||||||||||||||||||    
T  1647326 gaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataa 1647269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 390
Target Start/End: Complemental strand, 35486052 - 35485951
Alignment:
Q  289 tttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttcca 388  Q
    ||||||||||||||||| |||||  ||||| |||| |||||||| |||||||  ||| || ||||||| |||||  | |||| ||||||||| |||||||    
T  35486052 tttgaacttatctaccgacataagaacttgtgagactgtttgagagaacttactaaagcaacttatgatatgttcataagctgttttcagctcatttcca 35485953  T
Q  389 ta 390  Q
    ||    
T  35485952 ta 35485951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 391
Target Start/End: Complemental strand, 40158867 - 40158751
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttt 374  Q
    ||||||||  ||||||||| | ||||||| | |||||  ||||| |||| || ||| | |||||||||||||||||||||||||||||  | || | |||    
T  40158867 tttggattggcttatttgagcatatctactgacataagaacttgtgagactgattgggggaacttatgaaaacagcttatgacatgtttataagttgttt 40158768  T
Q  375 tcagcttatttccataa 391  Q
    |||||||| || |||||    
T  40158767 tcagcttaattacataa 40158751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 390
Target Start/End: Original strand, 43456627 - 43456743
Alignment:
Q  274 gtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagctttt 373  Q
    ||||||||| |||||||||||||||| |||   ||||||||||||  ||| |||||||  || ||| |||||||| || |||||||||   | | || ||    
T  43456627 gtttggatttacttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgtt 43456726  T
Q  374 ttcagcttatttccata 390  Q
    |||||||||||||||||    
T  43456727 ttcagcttatttccata 43456743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 388
Target Start/End: Original strand, 44438753 - 44438873
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggt 365  Q
    |||||| |||||| ||| ||| |||||| ||||||||| | ||||| ||||||  ||| ||| || | |||| | ||||||||||||||||||||||  |    
T  44438753 tagggcctgtttgaattgactgatttgagcttatctacagacataatcacttg--agactgtctgggggaacatgtgaaaacagcttatgacatgttcat 44438850  T
Q  366 tagcttttttcagcttatttcca 388  Q
     | || |||||||||||||||||    
T  44438851 aacctgttttcagcttatttcca 44438873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 12140683 - 12140597
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacat 359  Q
    ||||||||||  |||| || | ||||||||| | ||||||||||| ||| |  ||||||| ||||||||||||||| ||||||||||    
T  12140683 tgtttggattgtcttacttaaccttatctactgacataaacacttacgaaatagtttgagagaacttatgaaaacaacttatgacat 12140597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 12313087 - 12313181
Alignment:
Q  268 gggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||| |||||| |||| ||||||||| |||| | ||  |||||| |||||| |||| |||||| | ||| |||||||||||||||||| ||||||    
T  12313087 gggcctgtttgtattagcttatttgatcttacccactagcataagcacttgtgagattgtttgggagaatttatgaaaacagcttatgccatgtt 12313181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 43529777 - 43529895
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||| ||| |||||||||| ||||||||  || |||| |||||  || | |||||| | ||| |||||||||||||||||| ||||||  | |||| |    
T  43529777 tgtttgaattgacttatttgagcttatctattggtataagcacttctgacactgtttgggagaatttatgaaaacagcttatgccatgttcataagctat 43529876  T
Q  373 tttcagcttatttccataa 391  Q
    |||||| |||||| |||||    
T  43529877 tttcagtttattttcataa 43529895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 1801787 - 1801730
Alignment:
Q  305 ggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||| |||||| || | |||||| | |||||||||||||||||||||||||||||    
T  1801787 ggcataagcacttgtgatattgtttgggagaacttatgaaaacagcttatgacatgtt 1801730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 8017585 - 8017496
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||||| ||||||||||  |||||||  | ||||| |||||| | || | |||| | ||||||||||||||||||||||| |||||    
T  8017585 tgtttggattgacttatttgaggttatctattgacataagcacttgtgcgattatttgggagaacttatgaaaacagcttatgatatgtt 8017496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 6772445 - 6772489
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcata 310  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  6772445 tagggcatgtttggattgacttatttgagcttatctacaggcata 6772489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 10563473 - 10563517
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataa 311  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||    
T  10563473 agggcctgtttggattgacttatttgaacttatctaccagcataa 10563517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 40837356 - 40837472
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggt--tagct 370  Q
    ||||||||||  ||||||||| ||||||||| | |||||||||    |||| |||||| | ||  ||||||||||| |||||||||| |||    |||||    
T  40837356 tgtttggattggcttatttgagcttatctactgacataaacac----gagactgtttgggagagtttatgaaaacatcttatgacatattgtccatagct 40837451  T
Q  371 tttttcagcttatttccataa 391  Q
     ||||||||||||||||||||    
T  40837452 attttcagcttatttccataa 40837472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 301
Target Start/End: Complemental strand, 26202186 - 26202151
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatct 301  Q
    |||||| |||||||||||||||||||||||||||||    
T  26202186 tagggcctgtttggattaacttatttgaacttatct 26202151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 28039286 - 28039369
Alignment:
Q  308 ataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||| |||||| | || |||| ||||||| |||||||||||  ||||||| ||||  | |||| ||||||||||||||||||||    
T  28039286 ataagcacttgtgtgactgttcgagtgaatttatgaaaacaagttatgacttgttcataagctgttttcagcttatttccataa 28039369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 29430896 - 29430821
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||||| ||||||||| | |||||||||||| | || | ||||   ||||||||||||| ||||||||||||||    
T  29430896 ttatttgagcttatctactgacataaacacttgtgggactatttggaagaacttatgaaaatagcttatgacatgt 29430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 22878250 - 22878164
Alignment:
Q  272 atgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgaca 358  Q
    ||||||||||| |||||||||| |||||| || | ||||| |||||| |||| |||||| | || |||||| |||||  ||||||||    
T  22878250 atgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatggaaacaaattatgaca 22878164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 28677630 - 28677696
Alignment:
Q  325 tgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||||| | |||||||||||||||||||||||||| ||  | || | ||||| ||||||||||||||    
T  28677630 tgtttgggagaacttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataa 28677696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 38809437 - 38809359
Alignment:
Q  313 cacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||||| || |||||||| | |||||||| ||| ||||||||||||||||  | | || |||||| |||||||||||||    
T  38809437 cacttgtgaaaatgtttgggagaacttattaaaccagcttatgacatgttaataatctgttttcaacttatttccataa 38809359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 9478116 - 9478079
Alignment:
Q  265 ctagggcatgtttggattaacttatttgaacttatcta 302  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  9478116 ctagggcatgttgggattgacttatttgaacttatcta 9478079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 346
Target Start/End: Complemental strand, 39983496 - 39983423
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaa 346  Q
    ||||||||||  |||||||||  |||||||||||||||||  |||| |||| || ||||| |||||||| ||||    
T  39983496 tgtttggatttgcttatttgaggttatctaccggcataaatccttgtgagactgattgagagaacttataaaaa 39983423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 41817254 - 41817201
Alignment:
Q  338 ttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    ||||||||||| |||||||||||||| | |  | ||||||||||||||||||||    
T  41817254 ttatgaaaacatcttatgacatgttgataatttgttttcagcttatttccataa 41817201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 346
Target Start/End: Complemental strand, 43259986 - 43259913
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaa 346  Q
    ||||||||||  |||||||||||||||||||  |||||| |||||| || |||||| | |  ||||||||||||    
T  43259986 tgtttggattggcttatttgaacttatctactagcataagcacttgtgacaatgttcgggaaaacttatgaaaa 43259913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 43530070 - 43530147
Alignment:
Q  313 cacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccata 390  Q
    |||||| |||| || ||| | |||||||||||||||| ||||||||||||    |||| |||||| ||||||||||||    
T  43530070 cacttgtgagagtgcttgggagaacttatgaaaacagattatgacatgttcacaagctattttcaacttatttccata 43530147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 1494417 - 1494453
Alignment:
Q  325 tgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||||| || |||||||||||||||||||||||||    
T  1494417 tgtttgagagagcttatgaaaacagcttatgacatgt 1494453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 363
Target Start/End: Original strand, 6209580 - 6209668
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttg 363  Q
    |||||||| |||||||||| |||||||| | | |||| |||||  |||| ||| || ||||||||||||| ||||| | || |||||||    
T  6209580 tttggatttacttatttgagcttatctagctgtataagcacttttgagactgtctgggtgaacttatgaacacagcctctggcatgttg 6209668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 9886458 - 9886418
Alignment:
Q  271 catgtttggattaacttatttgaacttatctaccggcataa 311  Q
    ||||||||||| |||||||||||| |||||||| |||||||    
T  9886458 catgtttggatcaacttatttgaatttatctactggcataa 9886418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 29316764 - 29316812
Alignment:
Q  343 aaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    ||||||||||||||||||||  | || | ||||||||||||||||||||    
T  29316764 aaaacagcttatgacatgttcataagttcttttcagcttatttccataa 29316812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 351
Target Start/End: Original strand, 42852623 - 42852699
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagct 351  Q
    ||||||||  ||||||||||||||||| | ||||||| |||||| |||| ||||||   || | |||||||||||||    
T  42852623 tttggatttgcttatttgaacttatctgctggcataagcacttgtgagactgtttggaagagcctatgaaaacagct 42852699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 33723301 - 33723419
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||||||| ||||||||||||||||||||   |||||||||||| |||| || ||| |  |||||||| |||||||| ||||||||||  | || | |    
T  33723301 tgtttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacatgttcatgagatgt 33723400  T
Q  373 tttcagcttatttccataa 391  Q
    |||||||||||||||||||    
T  33723401 tttcagcttatttccataa 33723419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 7217988 - 7218111
Alignment:
Q  268 gggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggtta 367  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||  |||| |||||| | || ||| |||||||  ||||||||| |||    |    
T  7217988 gggcatgtttggattgacttatttaagcttatctaccggcataaacacttctgagattgtttgggggagcttgtgaaaacgacttatgacacgttcacaa 7218087  T
Q  368 gcttttttcagcttatttccataa 391  Q
    ||| |||||| ||||||| |||||    
T  7218088 gctgttttcaacttattttcataa 7218111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 391
Target Start/End: Complemental strand, 6292643 - 6292526
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||||||| |||||||||| ||||||||| | ||||| |||||  |||| |||||| | ||| || | ||||||||||||||||||||  | |||| |    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggagaattttt-aaaacagcttatgacatgttcataagctgt 6292545  T
Q  373 tttcagcttatttccataa 391  Q
    ||||||||||||| |||||    
T  6292544 tttcagcttattttcataa 6292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 385
Target Start/End: Original strand, 24460313 - 24460438
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagt------gaacttatgaaaacagcttatgacat 359  Q
    |||||| |||||||||| |||||||||||||||||||| | ||| | |||||| |||| |||||||||      ||| ||||||||| ||||||||||||    
T  24460313 tagggcctgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttgagtctgagagaaattatgaaaatagcttatgacat 24460412  T
Q  360 gttggttagcttttttcagcttattt 385  Q
    |||  | |||| ||| ||||||||||    
T  24460413 gttcataagctgtttccagcttattt 24460438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 391
Target Start/End: Original strand, 31517671 - 31517777
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatt 384  Q
    ||||||||| ||||| ||| ||||||| |||||| |||| |||||| | |||||||| |||||| || ||||||||||  | |||| |||||||||||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttatt 31517770  T
Q  385 tccataa 391  Q
    | |||||    
T  31517771 ttcataa 31517777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 43420409 - 43420320
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||| |||||| ||||||||| ||||||||| | |||||||||||| |||| || ||| | || |||||| |||||||||||||||||||    
T  43420409 tgttaggattagcttatttgagcttatctacagacataaacacttgtgagactgcttgtgagatcttatggaaacagcttatgacatgtt 43420320  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 357
Target Start/End: Original strand, 4033936 - 4034020
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgac 357  Q
    |||||| ||| ||| |||||||||| ||||| |||||||||||||| |||| |||||||| || |||||||||| | ||||||||    
T  4033936 tgtttgcattgactcatttgaacttgtctactggcataaacacttgtgagattgtttgagagagcttatgaaaataacttatgac 4034020  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 34536309 - 34536221
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||||| | |||||||||||| ||||||  | |||||||||||| |||| ||||||||    |||||||||||||||||||||||||    
T  34536309 tgtttggaatgacttatttgaacgtatctattgacataaacacttgtgagactgtttgagatggcttatgaaaacagcttatgacatgt 34536221  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 392
Target Start/End: Complemental strand, 35925829 - 35925722
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtg-aacttatgaaaacagcttatgacatgttggttagcttttttcagcttatt 384  Q
    |||||||| |||| |||| ||||||| | |||| |||| ||| || | | ||||||||||||||||||||||||||||  | |||| |||||| ||||||    
T  35925829 ttatttgagcttagctactggcataagcgcttgagagactgtctgggaggaacttatgaaaacagcttatgacatgttcataagctgttttcaacttatt 35925730  T
Q  385 tccataaa 392  Q
    ||||||||    
T  35925729 tccataaa 35925722  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 391
Target Start/End: Original strand, 37593614 - 37593721
Alignment:
Q  284 acttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttat 383  Q
    |||||||||| ||||| ||| ||||||||||||||  ||| |||||| |  |||| ||||| ||| |||||||||||||  | |||| ||||||||||||    
T  37593614 acttatttgagcttatatactggcataaacacttgttagactgtttgggaaaactaatgaacacaacttatgacatgttcataagctgttttcagcttat 37593713  T
Q  384 ttccataa 391  Q
    || |||||    
T  37593714 tttcataa 37593721  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 391
Target Start/End: Original strand, 10199321 - 10199445
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggtt 366  Q
    ||||| || ||||||| |||||||||| |||||||||   ||||| |||||| || | | |||| | ||||| ||||||| |||||||||||||||  |     
T  10199321 agggcctggttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcata 10199420  T
Q  367 agcttttttcagcttatttccataa 391  Q
    || | |||||||||||||| |||||    
T  10199421 agttgttttcagcttattttcataa 10199445  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 51929383 - 51929467
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacat 359  Q
    |||||||| |||| ||||| ||||||||| | ||||| ||| || || | ||||| || ||||||||||||||||||||||||||    
T  51929383 tttggattgacttttttgagcttatctactgacataagcacctgtgacactgtttaagagaacttatgaaaacagcttatgacat 51929467  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 391
Target Start/End: Original strand, 7136920 - 7137035
Alignment:
Q  276 ttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagctttttt 375  Q
    ||||||||||||||||||  |||||| ||| ||||||||||||  | |  ||||||  |||||||||||||  ||||||||||| ||  | || | ||||    
T  7136920 ttggattaacttatttgagtttatctcccgacataaacacttgttaaagagtttgaaagaacttatgaaaatcgcttatgacatattcataagttatttt 7137019  T
Q  376 cagcttatttccataa 391  Q
    |||||||||| |||||    
T  7137020 cagcttattttcataa 7137035  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 49691985 - 49692059
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||||||||||||||  | |||||  ||||| |||| |||||||| ||||||||||||| ||||||||||||||    
T  49691985 ttatttgaacttatctaatg-cataagaacttgtgagactgtttgagagaacttatgaaaatagcttatgacatgt 49692059  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 38170620 - 38170698
Alignment:
Q  284 acttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||| | ||||| ||| ||||| |||||||| |||| || ||| | || ||||||||||||||||||||||||||    
T  38170620 acttatttaaccttatatactggcatgaacacttgtgagactgcttgggagagcttatgaaaacagcttatgacatgtt 38170698  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 391
Target Start/End: Complemental strand, 4576923 - 4576838
Alignment:
Q  306 gcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    ||||||||||||||| || ||||||||  |||||||||||| || ||||||||||||  | || | | |||||||||||| |||||    
T  4576923 gcataaacacttgcgggactgtttgagacaacttatgaaaatagtttatgacatgtttataagttgtgttcagcttattttcataa 4576838  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 5157221 - 5157140
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatga 356  Q
    |||||||| |||||||||||||||||||| | |||||||||||| || | |||||| | || |||||  ||||| |||||||    
T  5157221 tttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaacaacttatga 5157140  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 5886907 - 5886982
Alignment:
Q  269 ggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaaca 348  Q
    |||||||||||||| |||||||||| |||||||   ||||||| || |||||||| |||||| | |||||||||||||||    
T  5886907 ggcatgtttggattgacttatttgagcttatct---ggcataagcaattgcgagactgtttg-gagaacttatgaaaaca 5886982  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 37811948 - 37811887
Alignment:
Q  328 ttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccat 389  Q
    ||||| |||||||||||||||||||||||||||||  | | || |||||| |||||||||||    
T  37811948 ttgagagaacttatgaaaacagcttatgacatgttcataaactgttttcaacttatttccat 37811887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 24279888 - 24279812
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    ||||||||||||||| |||  ||||||||||||| |||| || ||| | |||| |||| ||||| ||||||||||||    
T  24279888 cttatttgaacttatttactagcataaacacttgtgagactgattgggggaacctatggaaacaacttatgacatgt 24279812  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 31118132 - 31118076
Alignment:
Q  335 aacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||||||||||||| |||||||||||||  | || | ||||||||||||||||||||    
T  31118132 aacttatgaaaacatcttatgacatgttcatcagttgttttcagcttatttccataa 31118076  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 4757487 - 4757400
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||| || |||||||||| ||||||||  | |||||||||||| ||||   ||||   ||||||||||||||| |||||||||||||    
T  4757487 tttggtttgacttatttgagcttatctattgacataaacacttgtgagaccatttggcagaacttatgaaaacaacttatgacatgtt 4757400  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 23373225 - 23373320
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||| |||||| ||| |||||||||||||| ||||| |  |||| |||||| |||| |||||| | || |||||  ||||| ||||||||||||    
T  23373225 tagggcctgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttatagaaacaacttatgacatgt 23373320  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 360
Target Start/End: Original strand, 28837284 - 28837358
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatg 360  Q
    ||||||||| ||||||||| | ||||| |||||| |||| ||||| || || |||| |||||||||||||||||||    
T  28837284 cttatttgagcttatctactgacataagcacttgagagactgtttaagaga-cttacgaaaacagcttatgacatg 28837358  T

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Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 43371836 - 43371891
Alignment:
Q  299 tctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttat 354  Q
    ||||| ||||||| |||||| |||| |||||||| || ||||||||||||||||||    
T  43371836 tctactggcataagcacttgtgagactgtttgagagagcttatgaaaacagcttat 43371891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 14332074 - 14332024
Alignment:
Q  332 gtgaacttatgaaaacagcttatgacatgttggttagcttttttcagctta 382  Q
    |||||||||||||||||  ||||||||  || |||||||||||||||||||    
T  14332074 gtgaacttatgaaaacaaattatgacactttcgttagcttttttcagctta 14332024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 52014038 - 52013996
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacac 315  Q
    ||||||||||||||||||||| ||||||||  |||||||||||    
T  52014038 tgtttggattaacttatttgagcttatctattggcataaacac 52013996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 358
Target Start/End: Complemental strand, 2295235 - 2295163
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgaca 358  Q
    ||||||||| ||||||||| |||||||    ||| |||| |||||| | |||||||||||||||||||||||||    
T  2295235 cttatttgagcttatctactggcataagtt-ttgtgagactgtttgggagaacttatgaaaacagcttatgaca 2295163  T

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Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 4276562 - 4276607
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcataa 311  Q
    ||||||||||||||||| |||||||||| ||||||| | |||||||    
T  4276562 tagggcatgtttggatttacttatttgagcttatcttctggcataa 4276607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 4482029 - 4481969
Alignment:
Q  325 tgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttattt 385  Q
    |||||||| ||||||||||||||| ||||| |||||||  | |||| |||| |||||||||    
T  4482029 tgtttgagagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattt 4481969  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 384
Target Start/End: Complemental strand, 4550000 - 4549888
Alignment:
Q  272 atgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagctt 371  Q
    |||||||||||  ||||||||| |||||  ||||  |||||||| ||  ||  |||||| | |||||| ||||||||| ||||||||||||  | || |     
T  4550000 atgtttggattgtcttatttgagcttattcaccgttataaacacctgtaagtctgtttgggagaacttctgaaaacagattatgacatgttcataagttg 4549901  T
Q  372 ttttcagcttatt 384  Q
    |||||||||||||    
T  4549900 ttttcagcttatt 4549888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 391
Target Start/End: Complemental strand, 10280794 - 10280682
Alignment:
Q  279 gattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcag 378  Q
    |||| |||||||||||| ||||||  ||||||| || ||| || | ||||   | ||||||||||||||| |||||  ||||||  | ||||||| ||||    
T  10280794 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttatttcatgttcataagcttttgtcag 10280695  T
Q  379 cttatttccataa 391  Q
    ||||||| |||||    
T  10280694 cttattttcataa 10280682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 362
Target Start/End: Complemental strand, 15489112 - 15489020
Alignment:
Q  270 gcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||| |||  ||||||||| ||  ||||| | ||| | ||||||  |||||||||||| || |||||| ||||||| |||||||||||    
T  15489112 gcatgtttgcattggcttatttgagctcttctacagtcattagcacttgtaagaatgtttgagagagcttatgtaaacagcgtatgacatgtt 15489020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 25479678 - 25479614
Alignment:
Q  327 tttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||| |||| |||||||||| || ||||||||||||  |||| | |||||||||||||| |||||    
T  25479678 tttgtgtgagcttatgaaaatagattatgacatgttcattagttgttttcagcttattttcataa 25479614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 32515360 - 32515448
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    ||||||||||| | |||||||  ||||||||   ||||| |||||| |||| |||||| | || |||||| ||||||| ||||||||||    
T  32515360 tgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgt 32515448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 36070339 - 36070251
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttat 354  Q
    |||| ||||||||||||   ||||||||  |||||| | ||||||| |||||| |||| |||||  | ||||||||||||||| |||||    
T  36070339 taggtcatgtttggattggtttatttgatattatcttctggcataagcacttgtgagactgtttaggagaacttatgaaaacaacttat 36070251  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 359
Target Start/End: Complemental strand, 23215009 - 23214920
Alignment:
Q  270 gcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacat 359  Q
    ||||||||||||| |||||||||| |||||||||  ||||||||||||  |||| |||||||| ||| ||||||||||| ||||||||||    
T  23215009 gcatgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacat 23214920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 33894784 - 33894659
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggtt 366  Q
    ||||||||||||||||| ||||||||| |||||| |  | ||||| |||||| |||| |||||| | || |||||||||||||| ||||||||||   |     
T  33894784 agggcatgtttggattagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccata 33894685  T
Q  367 agcttttttcagcttatttccataaa 392  Q
    || | ||||||||||||||| |||||    
T  33894684 agttgttttcagcttatttcaataaa 33894659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 386
Target Start/End: Original strand, 36598287 - 36598388
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatt 384  Q
    |||||||||||||| |||| | ||||| || ||| |||| |||||||| || |||||| ||||| |||||||||||||  | |||| |||||||||||||    
T  36598287 cttatttgaacttaactactgacataagcaattgtgagattgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttatt 36598386  T
Q  385 tc 386  Q
    ||    
T  36598387 tc 36598388  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 391
Target Start/End: Original strand, 28727684 - 28727800
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttt 374  Q
    ||||||||||||||||||| |||||||   | | |||  |||||||||| |||||||| || |||||| |||| |||||||||||||| ||  | | |||    
T  28727684 tttggattaacttatttgagcttatcttttgacctaagaacttgcgagactgtttgagagagcttatggaaacggcttatgacatgttcgtatgttgttt 28727783  T
Q  375 tcagcttatttccataa 391  Q
    |||||||||||| ||||    
T  28727784 tcagcttatttctataa 28727800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 36538028 - 36537970
Alignment:
Q  304 cggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||||||||| |||| |||||||| ||||||||| ||||| |||||||||||||    
T  36538028 cggcataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacatgtt 36537970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 8094445 - 8094368
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||| |||||||||  |||||| |||||| |||| | |||||| ||  |||||||||||||||||||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaacagcttatgacatgtt 8094368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 390
Target Start/End: Complemental strand, 30535714 - 30535597
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||| ||| ||||||||||  | || ||| | |||||||||||| |||| |||||  | ||||||||||||||| ||||||| ||||| || |||| |    
T  30535714 tgtttgaattgacttatttgagttaatttactgacataaacacttgagagactgttttggagaacttatgaaaacaacttatgatatgttcgtaagctgt 30535615  T
Q  373 tttcagcttatttccata 390  Q
    |||||| |||||| ||||    
T  30535614 tttcaggttattttcata 30535597  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 3836604 - 3836688
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacat 359  Q
    ||||||||  ||||||||| ||||||||| ||| ||| |||||| || | |||||| | ||||||||||||| ||||||||||||    
T  3836604 tttggattgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttatgaaaatagcttatgacat 3836688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 22387815 - 22387933
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||||||| ||||| | |||||||| ||| | ||||||||| || |||| |||||| | || |||||||||||| |||||| ||||||  | | || |    
T  22387815 tgtttggattgacttactagaacttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtttataaactgt 22387914  T
Q  373 tttcagcttatttccataa 391  Q
    ||| | |||||||||||||    
T  22387915 ttttaacttatttccataa 22387933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 17988946 - 17988998
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataaacacttgc 319  Q
    ||||| ||||||||||||||||||||| |||||||||  |||||| |||||||    
T  17988946 agggcttgtttggattaacttatttgagcttatctactcgcataatcacttgc 17988998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 529510 - 529443
Alignment:
Q  276 ttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatga 343  Q
    ||||||| |||||||||| ||||||||| |||||||||||||| |||  | |||| | ||||||||||    
T  529510 ttggattgacttatttgagcttatctactggcataaacacttgtgaggctatttgggagaacttatga 529443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 9038268 - 9038173
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||| |||||| |||  |||| |||||| ||||||| ||||||| |||||  |||||||||     |||||||| ||||||||||||||||||||    
T  9038268 agggcttgtttgaattggcttagttgaacctatctacaggcataagcacttatgagaatgttcagaagaacttataaaaacagcttatgacatgtt 9038173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 351
Target Start/End: Complemental strand, 6977567 - 6977489
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagct 351  Q
    |||||||||| ||||||| ||  |||||||  ||||||| || ||| |||| ||||||||||| |||||| ||||||||    
T  6977567 tgtttggattgacttattagagtttatctattggcataagcatttgtgagattgtttgagtgagcttatggaaacagct 6977489  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 22759301 - 22759231
Alignment:
Q  284 acttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttat 354  Q
    |||||||||| ||||||||| ||||||| |||| ||||||  ||| ||| || |||||| |||||||||||    
T  22759301 acttatttgagcttatctactggcataagcactagcgagacagttcgagagagcttatggaaacagcttat 22759231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 25511778 - 25511688
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaactt-atgaaaacagcttatgacatgtt 362  Q
    |||||||||| |||||||||||||||||||| ||||||   |||||| ||| |||||| | ||  || |  ||||||||||||||||||||    
T  25511778 tgtttggattgacttatttgaacttatctacaggcatacgaacttgcaagactgtttgggagagtttaaccaaaacagcttatgacatgtt 25511688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 25670516 - 25670594
Alignment:
Q  284 acttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||| |||| ||||||||  | ||||| | |||| |||| ||||||||  |||||||||||||| |||||||||||||    
T  25670516 acttacttgagcttatctattgacataagctcttgtgagactgtttgagaaaacttatgaaaacaacttatgacatgtt 25670594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 30751671 - 30751625
Alignment:
Q  272 atgtttggattaacttatttgaacttatctaccggcataaacacttg 318  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||    
T  30751671 atgtttggattaacttatttaaacttatctactgacataagcacttg 30751625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 40598404 - 40598454
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgaga 323  Q
    |||||||||| |||||||||| |||||||||  |||| |||||||||||||    
T  40598404 tgtttggattgacttatttgagcttatctactagcatgaacacttgcgaga 40598454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 43219624 - 43219674
Alignment:
Q  334 gaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatt 384  Q
    |||||||| ||||||||||||||||||||  | |||| |||||||||||||    
T  43219624 gaacttatcaaaacagcttatgacatgttcataagctgttttcagcttatt 43219674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 13960675 - 13960723
Alignment:
Q  306 gcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttat 354  Q
    |||||| ||||||||||| | |||||| || ||||||||||||||||||    
T  13960675 gcataagcacttgcgagactatttgagagagcttatgaaaacagcttat 13960723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 391
Target Start/End: Complemental strand, 25596189 - 25596066
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggtt 366  Q
    ||||| |||||||| | |||||||||| |||||||||| |||||| || ||| |||| |||| | |  ||| ||| |||||||||||||||| |||  |     
T  25596189 agggcctgtttggactgacttatttgagcttatctaccagcataagca-ttgtgagattgttagggaaaacctataaaaacagcttatgacaagttacta 25596091  T
Q  367 agcttttttcagcttatttccataa 391  Q
    || | |||||| ||||||| |||||    
T  25596090 agttgttttcaacttattttcataa 25596066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 31744953 - 31744921
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccg 305  Q
    |||||||||||||||||||||| ||||||||||    
T  31744953 tgtttggattaacttatttgaatttatctaccg 31744921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 33266399 - 33266443
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataa 311  Q
    |||| ||||||||||| |||||||||| ||||||||||| |||||    
T  33266399 agggtatgtttggattgacttatttgagcttatctaccgacataa 33266443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 34083517 - 34083557
Alignment:
Q  263 acctagggcatgtttggattaacttatttgaacttatctac 303  Q
    |||||||||||||||||||| |||||||||| || ||||||    
T  34083517 acctagggcatgtttggattgacttatttgagctcatctac 34083557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 43219785 - 43219833
Alignment:
Q  335 aacttatgaaaacagcttatgacatgttggttagcttttttcagcttat 383  Q
    ||||||||||||||||||||||||||||  | |||| |||| |||||||    
T  43219785 aacttatgaaaacagcttatgacatgttcataagctgtttttagcttat 43219833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 46055914 - 46055958
Alignment:
Q  284 acttatttgaacttatctaccggcataaacacttgcgagaatgtt 328  Q
    ||||||||||| |||||||||| ||||||| |||| |||||||||    
T  46055914 acttatttgaagttatctaccgacataaacgcttgtgagaatgtt 46055958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 362
Target Start/End: Complemental strand, 16162916 - 16162822
Alignment:
Q  268 gggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||| ||||||||||  |||||||||  ||||||||  ||||||||||||| |||| ||||||||  ||||||||||||||||||||||| ||||    
T  16162916 gggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgacctgtt 16162822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 391
Target Start/End: Complemental strand, 7646364 - 7646239
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggt 365  Q
    |||||| |||||| |||  ||||||| | |||| |||| | ||||| |||| | || |||||||| | ||| |||||||||| ||||||||||||||| |    
T  7646364 tagggcctgtttgtattgccttatttaagcttaactactgacataagcactagtgacaatgtttgggagaatttatgaaaactgcttatgacatgttgat 7646265  T
Q  366 tagcttttttcagcttatttccataa 391  Q
     |||| ||||||||||||||||||||    
T  7646264 cagctattttcagcttatttccataa 7646239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 391
Target Start/End: Complemental strand, 9700158 - 9700034
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggtt 366  Q
    ||||| ||||||||||||||||||||| |||||||||  ||||||||||||| |||| | |||||| || ||| ||||| ||  |||||||||||   |     
T  9700158 agggcctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccata 9700059  T
Q  367 agcttttttcagcttatttccataa 391  Q
    |||| |||||| ||||||| |||||    
T  9700058 agctgttttcaccttattttcataa 9700034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 391
Target Start/End: Complemental strand, 6950468 - 6950355
Alignment:
Q  278 ggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttca 377  Q
    ||||| ||||||||||  |||||||| |||||||||| ||| |||| |||||| | || |||||| ||||| | |||||||||| | | || | ||||||    
T  6950468 ggattgacttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttca 6950369  T
Q  378 gcttatttccataa 391  Q
    ||||||||||||||    
T  6950368 gcttatttccataa 6950355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 362
Target Start/End: Original strand, 2487921 - 2488016
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||||||||||  |||||||||  | |||||| | ||||| |||||| |||| |||||| | ||||||||||||||| ||||| |||||||    
T  2487921 agggcatgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttataacatgtt 2488016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 39881646 - 39881729
Alignment:
Q  279 gattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||| |||||||||||||||||||  |||||||||||||| |||| ||||||   || ||| |||||| |||||||||||||||    
T  39881646 gattgacttatttgaacttatctattggcataaacacttgtgagattgtttggaagagcttgtgaaaatagcttatgacatgtt 39881729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 332
Target Start/End: Original strand, 14926894 - 14926960
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgag 332  Q
    |||||| |||||||||| |||||||||||||||| ||| ||||||| |||||| |||| ||||||||    
T  14926894 tagggcttgtttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgag 14926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 34771022 - 34770931
Alignment:
Q  270 gcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||||||| || ||||||||||  |||||| |  |||||| |||||| || | |||||||| || | |||||||||||||||||||||||    
T  34771022 gcatgtttggtttgacttatttgagtttatctgctagcataagcacttgtgaaactgtttgagagatcctatgaaaacagcttatgacatgt 34770931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 391
Target Start/End: Complemental strand, 34849259 - 34849136
Alignment:
Q  269 ggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagctt-atgacatgttggtta 367  Q
    |||||||| |||||| ||||||||| |||| |||| |||||||  ||||  |||| |||||| | ||||| ||||||||| ||| ||||||||||  | |    
T  34849259 ggcatgttcggattagcttatttgagcttagctactggcataagtacttttgagactgtttgggagaactaatgaaaacaactttatgacatgttcataa 34849160  T
Q  368 gcttttttcagcttatttccataa 391  Q
    ||  ||||||||| ||||||||||    
T  34849159 gccgttttcagctgatttccataa 34849136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 372
Target Start/End: Complemental strand, 2213546 - 2213460
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    ||||||||| ||||||||  ||||||||||||| || | ||||||   | | |||||||||||||||||||||||||| | ||||||    
T  2213546 ttatttgaaattatctactagcataaacacttgtgatactgtttggtagtagttatgaaaacagcttatgacatgttgataagcttt 2213460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 10383976 - 10383918
Alignment:
Q  333 tgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    ||||||||||||||||||||||||||| ||  | |||| ||| ||||||||||||||||    
T  10383976 tgaacttatgaaaacagcttatgacattttcataagctgtttacagcttatttccataa 10383918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 10075472 - 10075541
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatg 342  Q
    ||||| |||||||||||||||  |||||||| |||||||| |||||||||| ||||| || || ||||||    
T  10075472 tgtttcgattaacttatttgagtttatctactggcataaatacttgcgagactgtttaagagagcttatg 10075541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 391
Target Start/End: Complemental strand, 12851329 - 12851209
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcga--gaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagct 370  Q
    ||||||||||  ||||| |||||||| |||  |||||||||||||| ||  || |||||| |  |||||||||||||||||||| |||||||  | || |    
T  12851329 tgtttggattggcttatctgaacttacctattggcataaacacttgtgatagactgtttgggaaaacttatgaaaacagcttataacatgttcataagat 12851230  T
Q  371 tttttcagcttatttccataa 391  Q
     ||||| |||||||| |||||    
T  12851229 gttttcggcttattttcataa 12851209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 37461292 - 37461204
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||||||||||||||||||||||||| | | |||||||| || ||| ||| |||| ||  ||||| ||| | |||||||||||||    
T  37461292 tgtttggattaacttatttgaacttatctactgac-taaacactagcaagactgtatgagagagtttatggaaataacttatgacatgtt 37461204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 39389106 - 39389175
Alignment:
Q  284 acttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagctta 353  Q
    |||||||||||||||||||| | ||||||| |||| |||| ||  |||| ||||||| ||||||||||||    
T  39389106 acttatttgaacttatctactgccataaacgcttgtgagattgaatgagagaacttaggaaaacagctta 39389175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 42215219 - 42215343
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatg------tttgagtgaacttatgaaaacagcttatgacatgttggtt 366  Q
    ||||| ||||||||||||||| ||||| ||| ||||||| ||||| ||| | ||      |||| | ||||| |||||||||||||||||| ||||  |     
T  42215219 tgtttagattaacttatttgagcttatttactggcataagcacttacgacagtgacactgtttgggagaactaatgaaaacagcttatgacttgttcata 42215318  T
Q  367 agcttttttcagcttatttccataa 391  Q
    |||| |||||||||||||| |||||    
T  42215319 agctgttttcagcttatttacataa 42215343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 45098905 - 45098978
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacat 359  Q
    ||||| || ||||||||| |||||||||||||| |||| |||||  | |||| |||||||||| ||||||||||    
T  45098905 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttatgacat 45098978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 2493085 - 2493045
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacac 315  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  2493085 tttggattgacttatttgaacatatctaccggcataaacac 2493045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 3254315 - 3254263
Alignment:
Q  334 gaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttc 386  Q
    ||||||| |||||||||||||||||||||  | |||| |||||||||||||||    
T  3254315 gaacttaagaaaacagcttatgacatgttcataagctgttttcagcttatttc 3254263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 7918713 - 7918781
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttat 354  Q
    |||||| |||||||||||  ||||||||||||| |||| |||||| | || |||||||||||| |||||    
T  7918713 ttatttaaacttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 7918781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 31168159 - 31168115
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcata 310  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||    
T  31168159 tagggcatgtttggattgacttatttgaacctatctacaggcata 31168115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 385
Target Start/End: Original strand, 43368619 - 43368731
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||||||| |||||||||| |||||||||   ||||| || ||| |||| || |||    | |||||||||||| |||||||||||||  |||||| |    
T  43368619 tgtttggattgacttatttgatcttatctactaacataagcatttgtgagactggttgtaacagcttatgaaaacaacttatgacatgttcattagctat 43368718  T
Q  373 tttcagcttattt 385  Q
    ||||| |||||||    
T  43368719 tttcaacttattt 43368731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 10438039 - 10437984
Alignment:
Q  268 gggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgaga 323  Q
    ||||||||||||||| ||||||||||||||||| |  ||||||| |||||| ||||    
T  10438039 gggcatgtttggattgacttatttgaacttatccaatggcataatcacttgtgaga 10437984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 7714398 - 7714336
Alignment:
Q  268 gggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttg 330  Q
    ||||||||||||||| |||||||||| ||||| ||  | |||||||||||| |||| ||||||    
T  7714398 gggcatgtttggattgacttatttgagcttatataatgtcataaacacttgtgagactgtttg 7714336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 9835883 - 9835937
Alignment:
Q  337 cttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||||| |||||||||||||||||||  | |||| |||||| |||||||||||||    
T  9835883 cttatgtaaacagcttatgacatgttcataagctgttttcatcttatttccataa 9835937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 359
Target Start/End: Complemental strand, 10120856 - 10120822
Alignment:
Q  325 tgtttgagtgaacttatgaaaacagcttatgacat 359  Q
    |||||||| ||||||||||||||||||||||||||    
T  10120856 tgtttgagagaacttatgaaaacagcttatgacat 10120822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 361
Target Start/End: Original strand, 11569398 - 11569464
Alignment:
Q  295 cttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    ||||||| | ||||||| |||||| |||| ||||| || || |||||| ||||||||||||||||||    
T  11569398 cttatctgctggcataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgt 11569464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 27465496 - 27465446
Alignment:
Q  279 gattaacttatttgaacttatctaccggcataaacacttgcgagaatgttt 329  Q
    |||| |||||||||||||||||||  ||||||| ||||||||||| |||||    
T  27465496 gattgacttatttgaacttatctattggcataagcacttgcgagactgttt 27465446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 42893409 - 42893447
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataa 311  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  42893409 tgtttggattaacttatttgagtttatctaccggcataa 42893447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 391
Target Start/End: Complemental strand, 43504890 - 43504784
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatt 384  Q
    ||||||| | ||||||||| ||| ||| |||||| | || |||||  | ||||| ||||||||| |||| ||| ||||  | |||| |||||||||||||    
T  43504890 cttatttaagcttatctactggcttaagcacttgtgtgactgtttcggagaactgatgaaaacaacttacgacttgtttataagctgttttcagcttatt 43504791  T
Q  385 tccataa 391  Q
    |||||||    
T  43504790 tccataa 43504784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 44236742 - 44236860
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    ||||||||||| |||||||||  |||||||| ||||||| |||||| |||| |||| | | |||  |||||||| |||| | |||||| |  | || | |    
T  44236742 tgtttggattaccttatttgagtttatctactggcataagcacttgtgagactgttcgggagaatctatgaaaatagctcacgacatgctcttaagttat 44236841  T
Q  373 tttcagcttatttccataa 391  Q
    ||||||||||||| |||||    
T  44236842 tttcagcttattttcataa 44236860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 1117465 - 1117408
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgaga 323  Q
    |||||| |||||||||| ||||| |||||||||| |||  ||||||||||||| ||||    
T  1117465 tagggcttgtttggattgacttacttgaacttatatactagcataaacacttgtgaga 1117408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 1561426 - 1561369
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgag 332  Q
    |||||||| | |||||||| ||||||||  |||||||||||||| |||| ||||||||    
T  1561426 tttggattgatttatttgatcttatctaatggcataaacacttgtgagattgtttgag 1561369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 1892143 - 1892200
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttg 330  Q
    ||||| |||| ||||||||||  |||||||||| |||||||||||| |||| ||||||    
T  1892143 tgtttagattgacttatttgagtttatctaccgtcataaacacttgtgagattgtttg 1892200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 2458546 - 2458603
Alignment:
Q  334 gaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    ||||||||||| |||||||||| ||||||  | |||| ||||||| ||||||||||||    
T  2458546 gaacttatgaagacagcttatggcatgttcataagctgttttcagtttatttccataa 2458603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 44014712 - 44014806
Alignment:
Q  268 gggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||| ||||||||||  |||||||||  ||||||||  ||||||||||||| |||| ||||||||  ||||||||||||||||||||||| ||||    
T  44014712 gggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgacctgtt 44014806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 362
Target Start/End: Original strand, 41164909 - 41164998
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||| || ||||||||    ||||||| ||||||| ||||||||||||    
T  41164909 tgtttggattagcttatttgaacttatctaccggcataagaacttgtgacaatgtttggaaaaacttattaaaacagtttatgacatgtt 41164998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 384
Target Start/End: Complemental strand, 45541722 - 45541611
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||||||| |||||||||| ||||| ||  || |||||||||||  ||| |||||    |||||||||||||||||||||||||||||  | |||| |    
T  45541722 tgtttggattgacttatttgagcttatttaatggtataaacacttgtaagactgtttagaagaacttatgaaaacagcttatgacatgttcataagctgt 45541623  T
Q  373 tttcagcttatt 384  Q
    |||||| |||||    
T  45541622 tttcaggttatt 45541611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 3776332 - 3776393
Alignment:
Q  296 ttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgac 357  Q
    |||||||| |||||||  | ||| ||||||||||||| ||||||||||||||||||||||||    
T  3776332 ttatctactggcataagtaattgtgagaatgtttgagagaacttatgaaaacagcttatgac 3776393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 391
Target Start/End: Complemental strand, 21574643 - 21574523
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgc--gagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagct 370  Q
    |||||||| | |||||||||||||||||||| |||| || || |||   |||| |||||| | || |||||||||||| |||||||||||||  | ||||    
T  21574643 tgtttggaatgacttatttgaacttatctactggcaaaatcaattgtttgagactgtttgggagagcttatgaaaacaacttatgacatgttcataagct 21574544  T
Q  371 tttttcagcttatttccataa 391  Q
      ||| |||||||||||||||    
T  21574543 gcttttagcttatttccataa 21574523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 21872213 - 21872302
Alignment:
Q  272 atgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||||||||||||||||||| ||||||||| | ||||| |||||| |||| ||||||    | ||| |||||| ||||||||||||||    
T  21872213 atgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttggaaaagcttttgaaaatagcttatgacatgt 21872302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 49465645 - 49465702
Alignment:
Q  334 gaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    ||||||||||||||||||||| |||||||  |||| |||||| |||||||||||||||    
T  49465645 gaacttatgaaaacagcttattacatgttcattaggttttttaagcttatttccataa 49465702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 354
Target Start/End: Complemental strand, 50211886 - 50211805
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttat 354  Q
    ||||||||||||||||||| | |||||||||   ||||| ||||||  ||| |||||||| ||||||||||||||| |||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttat 50211805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 391
Target Start/End: Original strand, 20210837 - 20210965
Alignment:
Q  263 acctagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||| ||||||||||| | ||||||||  |||||||| | ||||| |||||| |||| |||||||| || |||||| |||| | |||||| ||||     
T  20210837 acctagggtatgtttggattgatttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttatgcaaacggattatgatatgtc 20210936  T
Q  363 ggttagcttttttcagcttatttccataa 391  Q
      | || | ||||||||||||||| ||||    
T  20210937 tatgagttgttttcagcttatttctataa 20210965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 2100088 - 2100187
Alignment:
Q  263 acctagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||  |||||||||| |||||||||| |||||||  | ||  ||||||||| |||| |||||| | || |||||| | |||||||||||||||||    
T  2100088 acctagggtctgtttggattgacttatttgagcttatctttcagctaaaacacttgtgagactgtttgtgagagcttatggagacagcttatgacatgtt 2100187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 19679260 - 19679334
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatg 360  Q
    ||||||||  ||||||||  |||||| ||||||||| ||| |||||| ||||||| ||||||| |||||||||||    
T  19679260 ttatttgagtttatctactagcataagcacttgcgaaaatctttgagagaacttacgaaaacaacttatgacatg 19679334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 50016014 - 50015948
Alignment:
Q  296 ttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||  |||||||||||||| |||| |||||||| ||||||||||||| | | |||||||||||    
T  50016014 ttatctattggcataaacacttgtgagactgtttgagagaacttatgaaaagaacgtatgacatgtt 50015948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 2304202 - 2304279
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||||||| ||||||  ||||||||||||| || | | |||||| ||| |||||||| || |||||||||||||    
T  2304202 cttatttgaactgatctactagcataaacacttgtgaaactatttgagagaaattatgaaagcaacttatgacatgtt 2304279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 2413598 - 2413686
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||||||| ||||||||||||| |||||   |||||| ||||||  ||  |||||||| || ||||||||||| ||| |||||||||    
T  2413598 tgtttggatttacttatttgaactcatctattagcataatcacttgtaagtctgtttgagagagcttatgaaaacggctcatgacatgt 2413686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 5391968 - 5391912
Alignment:
Q  335 aacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    ||||||||||||||||||||||||||||  | |||| |||||| ||||||| |||||    
T  5391968 aacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 5391912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 20194954 - 20195038
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacat 359  Q
    |||||||| | |||||||||||||||| |  |||||| || ||| |||| |||||| | || ||||||||||||| |||||||||    
T  20194954 tttggattgatttatttgaacttatcttcttgcataagcagttgtgagactgtttgtgagagcttatgaaaacagtttatgacat 20195038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 45783329 - 45783385
Alignment:
Q  284 acttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaactta 340  Q
    |||||||||||||||| |||||||| |||| |||| |||| |||||||| |||||||    
T  45783329 acttatttgaacttatataccggcacaaacgcttgtgagactgtttgagagaactta 45783385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 383
Target Start/End: Original strand, 30573829 - 30573943
Alignment:
Q  268 gggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggtta 367  Q
    |||| |||||||||  |||||||||| || |||||| | ||||| |||||| |||  |||||| | |||||||||||||||  ||||| ||||||  | |    
T  30573829 gggcctgtttggatggacttatttgagct-atctactgacataagcacttgtgagtttgtttgtgagaacttatgaaaacaaattatggcatgttcataa 30573927  T
Q  368 gcttttttcagcttat 383  Q
    ||| ||||||||||||    
T  30573928 gctgttttcagcttat 30573943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 391
Target Start/End: Complemental strand, 50952485 - 50952366
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaaca-cttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagctt 371  Q
    |||||||||  |||||||||| |||||| | | ||| ||||| | || |||| |||| ||| |||| || |||||||||||||||||||||  | | ||     
T  50952485 tgtttggatggacttatttgagcttatccatccgcacaaacaacctgtgagactgttcgagagaacgtacgaaaacagcttatgacatgttcataaactg 50952386  T
Q  372 ttttcagcttatttccataa 391  Q
    |||| |||||||||||||||    
T  50952385 ttttaagcttatttccataa 50952366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 53952147 - 53952080
Alignment:
Q  325 tgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataaa 392  Q
    ||||| || |||||||||||||||||| || |||||||  | |||| |||||||||||||| ||||||    
T  53952147 tgtttaagagaacttatgaaaacagctgataacatgttcatgagctgttttcagcttattttcataaa 53952080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 14548680 - 14548758
Alignment:
Q  313 cacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||||| |||| |||||||| || |||||||||||| | |||||||| ||  |  ||| ||||||||||||||||||||    
T  14548680 cacttgtgagactgtttgagagagcttatgaaaacaacgtatgacattttaataggctgttttcagcttatttccataa 14548758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 24684741 - 24684779
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataa 311  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  24684741 tgtttggattaacttatttgagcttatctactggcataa 24684779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 25925872 - 25925810
Alignment:
Q  281 ttaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatga 343  Q
    ||||||||||||||||||||||| ||||||| ||||||  | | ||||| || ||||||||||    
T  25925872 ttaacttatttgaacttatctactggcataagcacttgtaacactgttttagagaacttatga 25925810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 39723220 - 39723270
Alignment:
Q  334 gaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatt 384  Q
    |||||||| ||||||||||||||||||||  | |||| |||||||||||||    
T  39723220 gaacttatcaaaacagcttatgacatgttcataagctgttttcagcttatt 39723270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 40240740 - 40240785
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttg 318  Q
    ||||||||||||||||||||| ||||| |||  |||||||||||||    
T  40240740 tgtttggattaacttatttgagcttatatactagcataaacacttg 40240785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 387
Target Start/End: Original strand, 41644369 - 41644478
Alignment:
Q  278 ggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttca 377  Q
    |||||||||| ||||| |||||||||  |||||| |||||| || | |||||  | |||||||| |||||| |||  ||||| ||  | |||| ||||||    
T  41644369 ggattaacttctttgagcttatctactagcataagcacttgagacactgtttaggagaacttataaaaacaacttgggacattttcataagctgttttca 41644468  T
Q  378 gcttatttcc 387  Q
    ||||||||||    
T  41644469 gcttatttcc 41644478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 27290884 - 27290936
Alignment:
Q  337 cttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccat 389  Q
    ||||||||||||||||||||||||    | |||| ||||||||||||||||||    
T  27290884 cttatgaaaacagcttatgacatgcccataagctgttttcagcttatttccat 27290936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 38319044 - 38318992
Alignment:
Q  340 atgaaaacagcttatgacatgttggttagcttttttcagcttatttccataaa 392  Q
    ||||||||| ||||| |||||||  | |||| |||||||||||||||||||||    
T  38319044 atgaaaacaacttataacatgttcataagctattttcagcttatttccataaa 38318992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 39723381 - 39723429
Alignment:
Q  335 aacttatgaaaacagcttatgacatgttggttagcttttttcagcttat 383  Q
    ||||||||||||||||||||||||||||  | |||| |||| |||||||    
T  39723381 aacttatgaaaacagcttatgacatgttcataagctgtttttagcttat 39723429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 39769681 - 39769645
Alignment:
Q  280 attaacttatttgaacttatctaccggcataaacact 316  Q
    ||||||||||||||||||||||||  |||||||||||    
T  39769681 attaacttatttgaacttatctactcgcataaacact 39769645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 391
Target Start/End: Original strand, 37611147 - 37611252
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttattt 385  Q
    |||||||||||||||||| |||| ||  ||||| |||| |||||||| || |||||||||||| ||| |||||||||  | |||| ||||||| ||||||    
T  37611147 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttattt 37611246  T
Q  386 ccataa 391  Q
    ||||||    
T  37611247 ccataa 37611252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 391
Target Start/End: Original strand, 37787877 - 37787982
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttattt 385  Q
    |||||||||||||||||| |||| ||  ||||| |||| |||||||| || |||||||||||| ||| |||||||||  | |||| ||||||| ||||||    
T  37787877 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttattt 37787976  T
Q  386 ccataa 391  Q
    ||||||    
T  37787977 ccataa 37787982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 392
Target Start/End: Original strand, 499650 - 499769
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||||||| |||||||||| |||| |||| | ||||| ||| ||  ||  |||||| | |||||||||||||||||||||||||||||    || | |    
T  499650 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatgaaaacagcttatgacatgttaacaagttgt 499749  T
Q  373 tttcagcttatttccataaa 392  Q
    ||||||||||||||||||||    
T  499750 tttcagcttatttccataaa 499769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 11297115 - 11297233
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||| ||| |||||||| | ||||||||  ||||||||||||||  ||| |||||||  || |||||| ||||| |||| |||||||   |||||| |    
T  11297115 tgtttgaattgacttatttaagcttatctagtggcataaacacttgtaagactgtttgaaagagcttatggaaacaacttaagacatgtcaattagctat 11297214  T
Q  373 tttcagcttatttccataa 391  Q
    ||||||||||||| |||||    
T  11297215 tttcagcttattttcataa 11297233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 391
Target Start/End: Complemental strand, 38728549 - 38728435
Alignment:
Q  277 tggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttc 376  Q
    |||||| || ||||||| ||||||||  || |||||||| || | || |||||| | || |||||||||| ||||||||||||| |  | |||| |||||    
T  38728549 tggattgacatatttgagcttatctattggtataaacacctgtgtgattgtttgggagagcttatgaaaatagcttatgacatgctcctaagctgttttc 38728450  T
Q  377 agcttatttccataa 391  Q
    |||||||||||||||    
T  38728449 agcttatttccataa 38728435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 391
Target Start/End: Complemental strand, 8090082 - 8089969
Alignment:
Q  278 ggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttca 377  Q
    ||||| ||||||||||||||||||||   || || |||| |||||| | |||||| || |||||||||||| ||||||| || ||  | |||| ||||||    
T  8090082 ggattgacttatttgaacttatctactaacacaagcactcgcgagactatttgagagagcttatgaaaacaacttatgatatattcctaagctgttttca 8089983  T
Q  378 gcttatttccataa 391  Q
    |||||||| |||||    
T  8089982 gcttattttcataa 8089969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 391
Target Start/End: Complemental strand, 17368823 - 17368709
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||||||| |||||||| ||||||||||| ||||||| |||||| || |  |    || ||||||||||||||| |||||||||||||  |  ||  |    
T  17368823 tgtttggattgacttatttaaacttatctactggcataagcacttgtgacaccg----agagaacttatgaaaacaacttatgacatgttcatatgcagt 17368728  T
Q  373 tttcagcttatttccataa 391  Q
    |||||||||||||||||||    
T  17368727 tttcagcttatttccataa 17368709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 3977397 - 3977341
Alignment:
Q  335 aacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    ||||||||||||||||||||||||||||  |||||| | |||||||||||| |||||    
T  3977397 aacttatgaaaacagcttatgacatgttccttagctgtcttcagcttattttcataa 3977341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 11714776 - 11714872
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||| |||||||||||  ||||||||  |||| |||| |||||||||||||| ||||  ||||| | |||||||| ||||||| ||| ||||||||    
T  11714776 taggggatgtttggatttgcttatttgtgcttaactacaggcataaacacttgtgagatagtttgggagaacttataaaaacagattaggacatgtt 11714872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 11095427 - 11095502
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||| | ||||||||| | |||||||||||| || | |||||||| |||||| || ||||||||||||||||||    
T  11095427 ttatttaagcttatctactgacataaacacttgtgatattgtttgagagaacttgtggaaacagcttatgacatgt 11095502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 362
Target Start/End: Original strand, 18857316 - 18857406
Alignment:
Q  271 catgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||||||||||||||||| |||||||||| || ||||  ||||| ||||||| ||    ||| |||||||||||||| ||||||||||    
T  18857316 catgtttggattaacttatttg-acttatctactgggataacgacttgtgagaatgcttagaagaatttatgaaaacagctaatgacatgtt 18857406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 391
Target Start/End: Original strand, 10125649 - 10125755
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatt 384  Q
    ||||||| | ||||||||| | ||| | |||||| || | ||| |||| ||||||||| ||||| |||||||||||||| | || | |||||||||||||    
T  10125649 cttatttaagcttatctactgacatgagcacttgtgacattgtctgagagaacttatgtaaacaacttatgacatgttgataaggtgttttcagcttatt 10125748  T
Q  385 tccataa 391  Q
    | |||||    
T  10125749 ttcataa 10125755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 25720336 - 25720454
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    |||||| |||| |||||||||  |||||||| ||||||| |||||| |||| ||| |||| || ||||| ||||||  | ||||||||||  | | |||     
T  25720336 tgtttgaattagcttatttgaggttatctactggcataagcacttgtgagactgtctgagagagcttataaaaacaattcatgacatgttcataaacttc 25720435  T
Q  373 tttcagcttatttccataa 391  Q
    ||| |||||||||||||||    
T  25720436 ttttagcttatttccataa 25720454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 13508590 - 13508541
Alignment:
Q  274 gtttggattaacttatttgaacttatctaccggcataaacacttgcgaga 323  Q
    |||||| || |||||||||||||||||||| |||||||||||||| ||||    
T  13508590 gtttggcttgacttatttgaacttatctactggcataaacacttgtgaga 13508541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 21782576 - 21782645
Alignment:
Q  274 gtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatga 343  Q
    |||||| || ||||||||||| |||||||| |||||||||||||| |||  |||||||| || |||||||    
T  21782576 gtttggcttgacttatttgaaattatctactggcataaacacttgtgaggctgtttgagagagcttatga 21782645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 391
Target Start/End: Original strand, 41112830 - 41112935
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttattt 385  Q
    |||||||| |||||||||  ||||||||||||| || | ||| ||   ||||||||||||| ||||| ||||||||| || | || ||||| ||||||||    
T  41112830 ttatttgagcttatctacttgcataaacacttgtgacattgtctggcagaacttatgaaaatagcttctgacatgttcgtaatctgttttcggcttattt 41112929  T
Q  386 ccataa 391  Q
     |||||    
T  41112930 tcataa 41112935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 14599284 - 14599372
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttat 354  Q
    |||||| |||||||||| | |||||||||||||| |||  |||||||||||||  ||| |||||||| || |||||  ||||| |||||    
T  14599284 tagggcctgtttggattcagttatttgaacttatttactagcataaacacttgtaagattgtttgagagagcttatcgaaacaacttat 14599372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 12407659 - 12407722
Alignment:
Q  283 aacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaa 346  Q
    ||||||||||||||||||||  | |||||||||||| ||||  ||||||| || ||||||||||    
T  12407659 aacttatttgaacttatctattgacataaacacttgtgagacggtttgagagagcttatgaaaa 12407722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 26516557 - 26516470
Alignment:
Q  274 gtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    ||||| |||| |||||||||  |||| ||| ||||||| ||| || | |||||||| || || |||||||||||||||||||| ||||    
T  26516557 gtttgaattagcttatttgagtttatttactggcataagcacctgtgggaatgtttaagagagcttatgaaaacagcttatgatatgt 26516470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 392
Target Start/End: Complemental strand, 36318937 - 36318806
Alignment:
Q  261 atacctagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatg 360  Q
    |||| ||| |||||||||||||  ||||||| | ||||||||| ||||||| |||| | |||| |||| |||  |||| |   ||||| ||||| ||||     
T  36318937 atacttagagcatgtttggattgtcttattttagcttatctactggcataagcactggtgagattgttagagaaaactgaaataaacaacttattacatc 36318838  T
Q  361 ttggttagcttttttcagcttatttccataaa 392  Q
    ||| | |||| |||||||||||||| ||||||    
T  36318837 ttgttaagctgttttcagcttatttacataaa 36318806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 37526165 - 37526236
Alignment:
Q  320 gagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||| |||||||| || |||||||| ||| | |||||||||||  | |||| ||||||||||||||||||||    
T  37526165 gagactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataa 37526236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 37690602 - 37690673
Alignment:
Q  320 gagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||| |||||||| || |||||||| ||| | |||||||||||  | |||| ||||||||||||||||||||    
T  37690602 gagactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataa 37690673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 2568797 - 2568723
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacat 359  Q
    ||||||||| ||||||||| ||  ||| |||||| |||| |||||    ||||||||||||||||||||||||||    
T  2568797 cttatttgagcttatctactggtgtaagcacttgagagactgtttagaagaacttatgaaaacagcttatgacat 2568723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 355
Target Start/End: Complemental strand, 11105056 - 11104974
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatg 355  Q
    |||||||||| | |||||||| |||||| ||| |||||| |||||| || | | |||| | |||||||||||||||| |||||    
T  11105056 tgtttggattgatttatttgagcttatcaaccagcataagcacttgtgatactatttgggagaacttatgaaaacagtttatg 11104974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 391
Target Start/End: Original strand, 17258814 - 17258920
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatt 384  Q
    ||||||||| |||||| ||   ||||| |||||| || | | |||| | |||| |||||||| |||||||||||||||  | |||| |||||||||||||    
T  17258814 cttatttgagcttatcaactaacataagcacttgtgacattctttgggagaacctatgaaaatagcttatgacatgttcataagctgttttcagcttatt 17258913  T
Q  385 tccataa 391  Q
    | |||||    
T  17258914 ttcataa 17258920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 362
Target Start/End: Original strand, 12459920 - 12460009
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||||| ||||||||   ||||||| | | ||||| ||| || |||| |||||| | |||| |||||||||| |||||||||||||    
T  12459920 tgtttggattgacttatttcggcttatctgctgacataagcacctgtgagactgtttgggagaacctatgaaaacaacttatgacatgtt 12460009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 17369354 - 17369309
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttg 318  Q
    |||||||||| |||||||||||||||||||| | ||||| ||||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataatcacttg 17369309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 36638833 - 36638780
Alignment:
Q  338 ttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||||||||| |  |||||||||||  | |||||||||||||||||||||||||    
T  36638833 ttatgaaaactgtgtatgacatgttcataagcttttttcagcttatttccataa 36638780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 390
Target Start/End: Complemental strand, 37954837 - 37954720
Alignment:
Q  274 gtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatg-acatgttggttagcttt 372  Q
    |||||||||  ||||||||| ||||||||| |||||||| | ||  |||| |||| | | ||  |||||||||||||||||| | || ||  ||||||||    
T  37954837 gtttggattggcttatttgagcttatctacaggcataaaaaatttagagactgttcgggagagtttatgaaaacagcttatgaaaattttcattagcttt 37954738  T
Q  373 tttcagcttatttccata 390  Q
    ||||| ||||||| ||||    
T  37954737 tttcaacttattttcata 37954720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 4273328 - 4273380
Alignment:
Q  305 ggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgac 357  Q
    |||||||||| ||| |||| |||||||| |||| |||| ||||||||||||||    
T  4273328 ggcataaacatttgtgagattgtttgagagaacctatggaaacagcttatgac 4273380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 39594964 - 39594920
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataa 311  Q
    ||||| |||||||||| |||||||||| ||||||||||| |||||    
T  39594964 agggcttgtttggattgacttatttgagcttatctaccgacataa 39594920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 362
Target Start/End: Original strand, 7367973 - 7368062
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||||| ||||||||||  |||||||| ||||||||| |||| |||| |||||| | || || |||||||||||||||||||||||    
T  7367973 tgtttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgacatgtt 7368062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 356
Target Start/End: Complemental strand, 47399636 - 47399553
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatga 356  Q
    |||||| |||||||||||||||||||| ||| |||||||| ||||| |||| || ||||| |||||| |||||||| |||||||    
T  47399636 tgtttgaattaacttatttgaacttatatactggcataaaaacttgtgagactgattgagagaacttgtgaaaacaacttatga 47399553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 46247339 - 46247266
Alignment:
Q  290 ttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttg 363  Q
    ||||||||||||||| ||||||||||||| |||| ||| |||| || |||||||||| | ||||||||||||||    
T  46247339 ttgaacttatctaccagcataaacacttgtgagattgtctgagagatcttatgaaaagaacttatgacatgttg 46247266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 391
Target Start/End: Original strand, 45128235 - 45128347
Alignment:
Q  279 gattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcag 378  Q
    |||| |||||||||||||||||||||||||||| ||| || || | |||||||| || |||||| ||||| || ||  |||||   | |||| |||||||    
T  45128235 gattgacttatttgaacttatctaccggcataaccacatgtgatattgtttgagagagcttatggaaacaactgatatcatgtccatgagctgttttcag 45128334  T
Q  379 cttatttccataa 391  Q
    |||||||||||||    
T  45128335 cttatttccataa 45128347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 390
Target Start/End: Original strand, 46090738 - 46090850
Alignment:
Q  279 gattaacttatttgaacttatctaccgg-cataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttca 377  Q
    |||| ||||||||||||||||||||| | ||| |||| ||| |||| ||| ||||  | ||||||||||||||||| |||||||| ||||| | ||||||    
T  46090738 gattgacttatttgaacttatctacctgacattaacatttgtgagactgtatgagatagcttatgaaaacagcttaagacatgttcgttagttgttttca 46090837  T
Q  378 gcttatttccata 390  Q
    || ||||| ||||    
T  46090838 gcctattttcata 46090850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 390
Target Start/End: Complemental strand, 2996718 - 2996607
Alignment:
Q  279 gattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcag 378  Q
    ||||| ||||||||||||||| ||  | ||||| |||||  |||| |||||||| || |||||||||||| ||||||||||||   | |||||||||||     
T  2996718 gattagcttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaa 2996619  T
Q  379 cttatttccata 390  Q
    ||||||| ||||    
T  2996618 cttattttcata 2996607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 392
Target Start/End: Original strand, 48719350 - 48719429
Alignment:
Q  313 cacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataaa 392  Q
    |||||| |||| |||||||| |||||||||||||  | |||||||||||| || |||| |||||||||||||| ||||||    
T  48719350 cacttgtgagattgtttgagggaacttatgaaaatggtttatgacatgttcgtaagctgttttcagcttattttcataaa 48719429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 27123271 - 27123389
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    ||||||||||||||||||||| |||||  ||  ||||||  ||||| |||| |||||||| || |||||| ||||| ||||||||||||   | || | |    
T  27123271 tgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgt 27123370  T
Q  373 tttcagcttatttccataa 391  Q
    ||||| |||||||||||||    
T  27123371 tttcaacttatttccataa 27123389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 28615485 - 28615400
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacat 359  Q
    |||||||||| |||||||| |  ||||||||  ||||||||||||| |||| |||||| | |||||||||||||||||| |||||||    
T  28615485 tgtttggattgacttatttaagtttatctactagcataaacacttgtgagattgtttg-gagaacttatgaaaacagctaatgacat 28615400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 391
Target Start/End: Original strand, 30207503 - 30207608
Alignment:
Q  286 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttattt 385  Q
    ||||||||  |||||||| ||||||| |||||| |||| || | ||| || ||||| | |||||| ||||||||||  || |||| ||||||||||||||    
T  30207503 ttatttgattttatctacaggcataaccacttgtgagactgatcgagagagcttataagaacagcatatgacatgtctgtaagctgttttcagcttattt 30207602  T
Q  386 ccataa 391  Q
    ||||||    
T  30207603 ccataa 30207608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 46013249 - 46013322
Alignment:
Q  290 ttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttg 363  Q
    ||||||||||||||| ||||||||||||| |||| ||| |||| || |||||||||| | |||||| |||||||    
T  46013249 ttgaacttatctaccagcataaacacttgtgagattgtctgagagatcttatgaaaagaacttatggcatgttg 46013322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 28300213 - 28300336
Alignment:
Q  268 gggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggtta 367  Q
    |||||||||||||||||||| |||||||||||||||  ||||    | ||| | || || ||||| ||| ||||||||||||| |||||||||||  | |    
T  28300213 gggcatgtttggattaacttttttgaacttatctacttgcattggaatttgtgtgactgattgagagaatttatgaaaacagcctatgacatgttcttaa 28300312  T
Q  368 gcttttttcagcttatttccataa 391  Q
    | | |||||| ||||||| |||||    
T  28300313 gttgttttcaacttattttcataa 28300336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 4071994 - 4071921
Alignment:
Q  308 ataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagctt 381  Q
    |||| |||||| |||| |||||||| || ||||||||||||||||||||  ||||||| || | ||||||||||    
T  4071994 ataagcacttgtgagactgtttgagagagcttatgaaaacagcttatgatttgttggtaagttgttttcagctt 4071921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 18628486 - 18628555
Alignment:
Q  287 tatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatga 356  Q
    ||||||| ||||||||| | |||||||||||| |||| |||||| | || |||||||||||| |||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 391
Target Start/End: Complemental strand, 1137861 - 1137745
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttt 374  Q
    ||||||||| |||||||||  |||||||  |   |||||||||| || | |||||  | ||||||||||||||| |||||||||||||  | || | |||    
T  1137861 tttggattagcttatttgattttatctagtgttttaaacacttgtgacactgtttaggagaacttatgaaaacatcttatgacatgttcataagttgttt 1137762  T
Q  375 tcagcttatttccataa 391  Q
    |||| ||||||||||||    
T  1137761 tcagtttatttccataa 1137745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 29126176 - 29126252
Alignment:
Q  267 agggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatga 343  Q
    ||||| ||||||||||  ||||||||| ||||||||||||||||| ||||| ||| | | |||| | ||||||||||    
T  29126176 agggcttgtttggattggcttatttgagcttatctaccggcataagcacttacgaaactatttgggggaacttatga 29126252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 43886112 - 43886167
Alignment:
Q  335 aacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccata 390  Q
    ||||||||||||||||||||| ||| ||  | |||| |||||||||||||||||||    
T  43886112 aacttatgaaaacagcttatggcattttcataagctattttcagcttatttccata 43886167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 44249368 - 44249317
Alignment:
Q  341 tgaaaacagcttatgacatgttggttagcttttttcagcttatttccataaa 392  Q
    ||||||||||||||||||||||| | || ||| |||||||||||| ||||||    
T  44249368 tgaaaacagcttatgacatgttgataagttttcttcagcttattttcataaa 44249317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 362
Target Start/End: Complemental strand, 52172886 - 52172787
Alignment:
Q  263 acctagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||||| || |||||  ||||||||| ||||  ||| |||||||  | ||| |||| |||| | |  ||||||||||||||||||||||||||||    
T  52172886 acctagggcattttaggattggcttatttgagcttacatactggcataagtatttgtgagactgttggggaaaacttatgaaaacagcttatgacatgtt 52172787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 18512434 - 18512484
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgaga 323  Q
    ||||| ||||||||||||||| ||||||||| | |||||||||||| ||||    
T  18512434 tgtttcgattaacttatttgagcttatctactgacataaacacttgtgaga 18512484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 24160450 - 24160536
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||||| |||||||||| |||||| || |  ||||  ||||| |||| | |||| |||||||||||||||||| |||| ||||||    
T  24160450 tttggatttacttatttgagcttatcaacagatataagtacttgtgagattatttgggtgaacttatgaaaacagtttatcacatgt 24160536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 363
Target Start/End: Original strand, 31708768 - 31708858
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttg 363  Q
    |||||||||| ||| ||||||||||||| ||||  ||| | ||| | |||| |||||||  ||||||||||||| | | ||||||||||||    
T  31708768 tgtttggattgactaatttgaacttatccaccgatatatatactcgtgagattgtttgatagaacttatgaaaatatcctatgacatgttg 31708858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 46187826 - 46187872
Alignment:
Q  271 catgtttggattaacttatttgaacttatctaccggcataaacactt 317  Q
    ||||||||||| | ||||||||| ||||||||| |||||||||||||    
T  46187826 catgtttggatgatcttatttgagcttatctactggcataaacactt 46187872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 388
Target Start/End: Original strand, 50799986 - 50800064
Alignment:
Q  310 aaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttcca 388  Q
    ||||||||| |||| |||||| | ||||| ||| ||||| ||||||||||||   | |||| |||||||||||||||||    
T  50799986 aaacacttgtgagattgtttgggagaactaatgtaaacaacttatgacatgtctataagctgttttcagcttatttcca 50800064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 55870259 - 55870345
Alignment:
Q  271 catgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgac 357  Q
    |||||||||||||||||||||||  |||||||  | |||||||| ||| |||| | ||||||  | |||||||||| || |||||||    
T  55870259 catgtttggattaacttatttgagtttatctaatgacataaacatttgtgagactctttgagatagcttatgaaaaaagtttatgac 55870345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 24193683 - 24193638
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttg 318  Q
    |||||||||| |||||||||| ||||||| | ||||||||||||||    
T  24193683 tgtttggattgacttatttgagcttatctcctggcataaacacttg 24193638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 24370881 - 24370958
Alignment:
Q  284 acttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||||||| ||||||||   |||||| ||| || ||||||||||||   |||||||| ||||| ||||||||||||    
T  24370881 acttatttgagcttatctattcgcataagcacatgtgagaatgtttgataaaacttatggaaacaacttatgacatgt 24370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 39178185 - 39178270
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgaca 358  Q
    |||||||||| || ||||| | | ||||||| | |||||||||||  || | |||||| | |||||||||||||| ||||||||||    
T  39178185 tgtttggattgacgtatttaagcatatctactgacataaacacttttgacactgtttgggagaacttatgaaaaccgcttatgaca 39178270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 42641570 - 42641647
Alignment:
Q  285 cttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||| ||||||||| ||| | |||||||| || | |||||    ||||||||||||||| |||||||||||||    
T  42641570 cttatttgagcttatctactggcgtgaacacttgtgatactgttttcaagaacttatgaaaacaccttatgacatgtt 42641647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 1554968 - 1555016
Alignment:
Q  314 acttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||| ||| |||||||| ||| ||||||||| |||||||||||||||    
T  1554968 acttgcaagactgtttgagagaatttatgaaaatagcttatgacatgtt 1555016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 6428169 - 6428081
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||| ||| |||||||||| ||||| ||  || |||| |||||| ||||  ||||||| ||  ||||||||||| ||||||||||||    
T  6428169 tgtttgaattgacttatttgagcttatatattggtataagcacttgtgagacagtttgagagagattatgaaaacaacttatgacatgt 6428081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 362
Target Start/End: Complemental strand, 10172216 - 10172124
Alignment:
Q  270 gcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||||||| | |||||||| ||||||||   |||||| |||||| || | |||||||   | |||||| ||||||||| |||||||||    
T  10172216 gcatgtttggattgatttatttgagcttatctatatgcataagcacttgtgaaactgtttgatatagcttatggaaacagcttgtgacatgtt 10172124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 20936210 - 20936266
Alignment:
Q  335 aacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||||||||||||| ||||||| |||||  | |||| |||||| |||||||||||||    
T  20936210 aacttatgaaaacaacttatgatatgttcataagctgttttcaccttatttccataa 20936266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 22523808 - 22523748
Alignment:
Q  296 ttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatga 356  Q
    |||||||| | |||||  ||||| |||| ||||||||| |||||||||||| |||||||||    
T  22523808 ttatctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 22523748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 390
Target Start/End: Original strand, 22662227 - 22662283
Alignment:
Q  334 gaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccata 390  Q
    ||||||||||||| | ||||||| |||||  | |||| |||||||||||||||||||    
T  22662227 gaacttatgaaaaaaacttatgatatgttcataagctattttcagcttatttccata 22662283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 391
Target Start/End: Original strand, 32171336 - 32171420
Alignment:
Q  307 cataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    ||||| ||||||||||| |||||||| || |||||||||||||||||||||| ||     |||| ||||||||||||||||||||    
T  32171336 cataagcacttgcgagactgtttgagagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataa 32171420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 32577931 - 32578022
Alignment:
Q  299 tctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccata 390  Q
    ||||| |||||||| ||||| || | |||||||| || |||||||||||| ||||||||||||   | |||| |||||||||||||||||||    
T  32577931 tctactggcataaatacttgggacattgtttgagagagcttatgaaaacaacttatgacatgtccttgagctgttttcagcttatttccata 32578022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 360
Target Start/End: Complemental strand, 2455964 - 2455874
Alignment:
Q  270 gcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatg 360  Q
    ||||| ||| ||| |||||||||| ||||||||||||||||| ||||||||||| |||||    || |||||| ||||| |||||||||||    
T  2455964 gcatgattgaattgacttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaacttatgacatg 2455874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 2460070 - 2460188
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttt 372  Q
    ||||||||||||||||||||| |||||  ||  ||||||  ||||| |||| |||||||| || |||||| ||||| ||||||||||||   | || | |    
T  2460070 tgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgt 2460169  T
Q  373 tttcagcttatttccataa 391  Q
    ||||| |||||||||||||    
T  2460170 tttcaacttatttccataa 2460188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 26559160 - 26559247
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||||||||||||||  ||| |||| ||||||| || ||| |||| ||||||   ||||||||||||||| ||||||| |||||    
T  26559160 tttggattaacttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttatgaaaacaacttatgatatgtt 26559247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 769254 - 769200
Alignment:
Q  308 ataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||||| |||| ||||||  |||||||||||||||| |||||||||||||    
T  769254 ataaacacttgtgagactgtttggatgaacttatgaaaacatcttatgacatgtt 769200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 2263344 - 2263254
Alignment:
Q  272 atgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||||||  ||||||| ||||| ||||  | |||||||||||  || | |||||||| ||||||||||||||| | |||||||||||    
T  2263344 atgtttggattgtcttatttaaacttctctattgtcataaacacttaagaaactgtttgagagaacttatgaaaacaacatatgacatgtt 2263254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 31624180 - 31624123
Alignment:
Q  334 gaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||||||||||||||||||||||||||||  | |||| |||||| ||||||| |||||    
T  31624180 gaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 31624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 391
Target Start/End: Complemental strand, 34404009 - 34403888
Alignment:
Q  270 gcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagc 369  Q
    |||||||||||||||||||||| | || ||  ||  |||||||||||||  ||| |||||  | ||| ||| ||||||| |||||||||||||  | ||     
T  34404009 gcatgtttggattaacttatttcagctaataaactagcataaacacttgttagactgtttaggagaagttaagaaaacaacttatgacatgttcataagg 34403910  T
Q  370 ttttttcagcttatttccataa 391  Q
    | |||||| |||||||||||||    
T  34403909 tgttttcaccttatttccataa 34403888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 33080492 - 33080615
Alignment:
Q  268 gggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggtta 367  Q
    ||||||||||||||   ||||||||| ||||| ||| ||||||| |||||| |||| ||||| |  ||| || ||||| || |||||||||||||  | |    
T  33080492 gggcatgtttggataggcttatttgagcttatttactggcataagcacttgtgagattgtttaatagaatttctgaaaccaacttatgacatgtttataa 33080591  T
Q  368 gcttttttcagcttatttccataa 391  Q
    | | ||||||| ||||||| ||||    
T  33080592 gttattttcagtttatttctataa 33080615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 696692 - 696642
Alignment:
Q  334 gaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatt 384  Q
    |||||||| ||||||||||||||||||||  | |||| |||||||||||||    
T  696692 gaacttatcaaaacagcttatgacatgttcataagctgttttcagcttatt 696642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 391
Target Start/End: Original strand, 8420112 - 8420234
Alignment:
Q  270 gcatgtttggattaactt-atttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttag 368  Q
    ||||||||||||| |||| |||||| ||||||||  | |||||||||||| |||| |||| | | || |||||  ||| ||||||||||||||     ||    
T  8420112 gcatgtttggattgactttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttatagaaatagcttatgacatgtccacaag 8420211  T
Q  369 cttttttcagcttatttccataa 391  Q
    || |||||| |||||||||||||    
T  8420212 ctattttcaacttatttccataa 8420234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 13908562 - 13908496
Alignment:
Q  325 tgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||||||| |||||||  || | ||||||||||||||| || |||| |||||||||||||| |||||    
T  13908562 tgtttgagagaacttaataagaaagcttatgacatgttcgtaagctgttttcagcttattttcataa 13908496  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 33089658 - 33089568
Alignment:
Q  272 atgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||||| || |||||||||| ||||||||| | ||||   | ||| |||| | ||| || |||||||||||||||||||| ||||||||    
T  33089658 atgtttgggttgacttatttgagcttatctactgacatatgtatttgtgagactatttcagagaacttatgaaaacagcttaggacatgtt 33089568  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 13908391 - 13908346
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacacttg 318  Q
    |||||| ||| |||||||||||||||||||| | ||||||||||||    
T  13908391 tgtttgaattgacttatttgaacttatctactgacataaacacttg 13908346  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 24838704 - 24838761
Alignment:
Q  305 ggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    ||||||||||||| ||||| |||||| | || ||| ||||||||| ||||||||||||    
T  24838704 ggcataaacactttcgagactgtttgggggagcttgtgaaaacagattatgacatgtt 24838761  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 33911212 - 33911313
Alignment:
Q  284 acttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttat 383  Q
    ||||||||||| ||||||||  ||| || |||| | || | ||||| || || |||||||||| |||||  |||||||  ||||||| ||||||||||||    
T  33911212 acttatttgaatttatctactagcacaagcactcgtgaaactgtttaagagatcttatgaaaatagctttggacatgtctgttagctgttttcagcttat 33911311  T
Q  384 tt 385  Q
    ||    
T  33911312 tt 33911313  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 696531 - 696483
Alignment:
Q  335 aacttatgaaaacagcttatgacatgttggttagcttttttcagcttat 383  Q
    ||||||||||||||||||||||||||||  | |||| |||| |||||||    
T  696531 aacttatgaaaacagcttatgacatgttcataagctgtttttagcttat 696483  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 391
Target Start/End: Original strand, 725608 - 725692
Alignment:
Q  307 cataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataa 391  Q
    |||||||||| | |||||  || ||| || |||||||||||| ||||||||||||  ||   || ||||||||||||||||||||    
T  725608 cataaacactcgtgagaacattcgagagagcttatgaaaacaacttatgacatgtccgtagactattttcagcttatttccataa 725692  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 740798 - 740894
Alignment:
Q  266 tagggcatgtttggattaacttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgtt 362  Q
    |||||| |||||| ||| ||||||||||  |||||||| | ||| |||| ||| ||||| || |||| || ||| || ||||| |||||||||||||    
T  740798 tagggcttgtttgtattgacttatttgagattatctactgtcatgaacatttgtgagaaagtgtgagagagcttgtggaaacaacttatgacatgtt 740894  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 4516110 - 4516066
Alignment:
Q  273 tgtttggattaacttatttgaacttatctaccggcataaacactt 317  Q
    ||||||| ||| |||| |||||||||| |||||||||||||||||    
T  4516110 tgtttggtttagcttaattgaacttatttaccggcataaacactt 4516066  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 12111116 - 12111068
Alignment:
Q  275 tttggattaacttatttgaacttatctaccggcataaacacttgcgaga 323  Q
    |||||||| |||||||||| |||||||||  |||||| |||||||||||    
T  12111116 tttggattgacttatttgagcttatctactagcataagcacttgcgaga 12111068  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 33116695 - 33116647
Alignment:
Q  313 cacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacatgt 361  Q
    |||||| |||| |||||||| ||| ||||||||||| ||||||||||||    
T  33116695 cacttgtgagactgtttgagggaatttatgaaaacaacttatgacatgt 33116647  T

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Target: scaffold0608 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 9608 - 9668
Alignment:
Q  325 tgtttgagtgaacttatgaaaacagcttatgacatgttggttagcttttttcagcttattt 385  Q
    |||||||| ||||||||||||||| ||||| |||||||  | |||| |||| |||||||||    
T  9608 tgtttgagagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattt 9668  T

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