View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_high_23 (Length: 324)
Name: NF10829A_high_23
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_high_23 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 43612079 - 43611767
Alignment:
| Q |
7 |
gtaagtactatcaatttcctatattcatttcaaacaaccaacactttgttcaacattagtactgatatgttcagtatggctcataagcatataatagggc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43612079 |
gtaagtactatcaatttcctatattcatttcaaacaaccaacactttattcaacattagtactgatatgttcagtatggctcataagcatataatagggc |
43611980 |
T |
|
| Q |
107 |
aaggggcaggggagctgagtgagtgagacggtgcggttcaggggtattgttgtaatctggactgtagtcttatatatattgtttgtaattgtaacactgt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43611979 |
aaggggcaggggagctgagtgagtgagacggtgcgattcaggggtattgttgtaatctggaccgtagtcttatatatatggtttgtaattgtaacactgc |
43611880 |
T |
|
| Q |
207 |
aataatacaggactacagctgctctatagtcgcagatgtaggcacactggaccaaattgcataaacaaatgattgtgttcattgtcattgttatttatcg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43611879 |
aataatacaggactacagctgctctatagtcgcagatgtaggcacactggaccaaattgcataaacaaatgattgtgttcattgtcattgttatttatcg |
43611780 |
T |
|
| Q |
307 |
cttctttgcttct |
319 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
43611779 |
cttctttggttct |
43611767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 34940182 - 34940234
Alignment:
| Q |
142 |
gttcaggggtattgttgtaatctggactgtagtcttatatatattgtttgtaa |
194 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||||||| | |||||| |
|
|
| T |
34940182 |
gttcaggggtattgttctaatctggaccgtagtactatatatatggcttgtaa |
34940234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 27407329 - 27407245
Alignment:
| Q |
205 |
gtaataatacaggactacagctgctctatagtcgcagatgtaggcacactggaccaaattgcataaacaaatgattgtgttcattgtc |
292 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||||| ||||| | |||||||| ||| ||||| |||||||| |||||| |
|
|
| T |
27407329 |
gtaataatacaggactatagcttctctacagtcgcagatgta---acacttggccaaattgtgtaatcaaataattgtgtttattgtc |
27407245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 32349776 - 32349735
Alignment:
| Q |
144 |
tcaggggtattgttgtaatctggactgtagtcttatatatat |
185 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
32349776 |
tcaggggcattgttgtaatctggaccgtagtattatatatat |
32349735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 24459 - 24491
Alignment:
| Q |
218 |
actacagctgctctatagtcgcagatgtaggca |
250 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
24459 |
actacagctgctctatagtcgcagaggtaggca |
24491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University