View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_high_3 (Length: 676)

Name: NF10829A_high_3
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_high_3
NF10829A_high_3
[»] chr3 (1 HSPs)
chr3 (8-654)||(52373458-52374104)


Alignment Details
Target: chr3 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 8 - 654
Target Start/End: Complemental strand, 52374104 - 52373458
Alignment:
Q  8 caatgagcttcgagtttctgcacctaaaactgaaccatttatatgattaccattcttttccaactccacttttcttattacttcatgttttatcctcata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52374104 caatgagcttcgagtttctgcacctaaaactgaaccatttatatgattaccattcttttccaactccacttttcttattacttcatgttttatcctcata 52374005  T
Q  108 acatcttttccaaacctcatctccatcaaaattttcatttttccatcaagaagcttctctttagcagcccatctttgcaatttcccagaagtagttttcg 207  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52374004 acatcttttccaaacctcatctccattaaaattttcatttttccatcaagaagcttctctttagcagcccatctttgcaatttcccagaagtagttttcg 52373905  T
Q  208 gaacacattcactcttaaccaaaacaacccatccaacttctacaccctctttcttcaaaacactttctttaattccttcgccaacactcctcagaatccc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373904 gaacacattcactcttaaccaaaacaacccatccaacttctacaccctctttcttcaaaacactttctttaattccttcgccaacactcctcagaatccc 52373805  T
Q  308 ttcatccaaatctttttccatcctttgcatctctgcaacaattacaaccgttgctaaaactttaaaagccgcaacacaacctcctcgtagtaactttggg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373804 ttcatccaaatctttttccatcctttgcatctctgcaacaattacaaccgttgctaaaactttaaaagccgcaacacaacctcctcgtagtaactttggg 52373705  T
Q  408 aaactgttaaaaaccacagtctctatgtaatgtggttgaatcttttcaccattttgaagctgtatagtatcttgaattctaccagtaacaaagagatacc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373704 aaactgttaaaaaccacagtctctatgtaatgtggttgaatcttttcaccattttgaagctgtatagtatcttgaattctaccagtaacaaagagatacc 52373605  T
Q  508 tgttttctccttttacgattcctttgtcacccgttcgaagaaaacacttacgaactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373604 tgttttctccttttacgattcctttgtcacccgttcgaagaaaacacttacgaactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagg 52373505  T
Q  608 gtgaccaaggtaaccagaggcattacttggagatgaaacccaaattt 654  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  52373504 gtgaccaaggtaaccagaggcattacttggagatgaaacccaaattt 52373458  T

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