View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_high_9 (Length: 474)
Name: NF10829A_high_9
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 474
Target Start/End: Original strand, 48825583 - 48826054
Alignment:
| Q |
14 |
gaacagtgtgagtagtagccctgggaagaata--caaaaataagaaactgaagcaaaacaattaaaatgttgaaggagggtgatatagcatacatacata |
111 |
Q |
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| T |
48825583 |
gaacagtgtgagtagtagccctgggaagaatatacagaaataagaaactgaagcaaaacaattaaa--------ggagggtgatatagcatacatacata |
48825674 |
T |
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| Q |
112 |
cacaacaacaaggaaagcaacatgagg---------ttgagatagaataacatcaactttttcttcaaccatttctctatcggcaagtgtaatgggttta |
202 |
Q |
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| T |
48825675 |
cacaacaacaaggaaagcaacatgagaaagatgagcttgagatagaataacatcaactttttcttcaaccatttctctatcggcaagtgtaatgggttta |
48825774 |
T |
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| Q |
203 |
ccatatagtttttctaagttggagaggccgtttgaagagaggccgaaggagaggagggaagtgtaagcttccatgtaaactttgtcgcatttatatatga |
302 |
Q |
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| T |
48825775 |
ccatatagtttttctaagttggagaggccttttgaagagaggccgaaggagaggagggaagtgtaagcttccatgtaaactttgtcgcatt----tatga |
48825870 |
T |
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| Q |
303 |
atagcttgtaaacctttgagagtgatatcttgctcgttgcccaatcctaaaccaattatatgtataacatt--------------tcaaatcaaatgaat |
388 |
Q |
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| T |
48825871 |
atagcttgtaaacctttgagagtgatatcttgctcgttgcccaatcctaaaccaat--tatgtataacatttttctactgaactatcaaatcaaatgaat |
48825968 |
T |
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| Q |
389 |
tgcaatggagaagaagagcttactgtcgcagcgcagagagagaggtaatgacacagcctgcggggagagtttgctggcgaggttac |
474 |
Q |
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| T |
48825969 |
tgcaatggagaagaagagcttactgtcgcagcgcagagagagaggtaatgacacagcctgcggggagagtttgctggcgaggttac |
48826054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 146 - 374
Target Start/End: Original strand, 53054117 - 53054339
Alignment:
| Q |
146 |
agaataacatcaactttttcttcaaccatttctctatcggcaagtgtaatgggtttaccatatagtttttctaagttggagaggccgtttgaagagaggc |
245 |
Q |
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| T |
53054117 |
agaatatcatccgctttttcttcaaccatttctctatcggcaagaataatgggtttaccgtatagtttttcgaggttggagaggccgtgtgaagagagac |
53054216 |
T |
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| Q |
246 |
cgaaggagaggagggaagtgtaagcttccatgtaaactttgtcgcatttatatatgaatagcttgtaaacctttgagagtgatatcttgctcgttgccca |
345 |
Q |
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| T |
53054217 |
cgaaggagagaagggaagtgtaagcttccatgtaaaccttgtcgcatt----tttgaatagcttctaaacctttgagtgtaatatcttgctcatcgccca |
53054312 |
T |
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| Q |
346 |
atcctaaaccaattatatgtataacattt |
374 |
Q |
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| T |
53054313 |
accctaaaccgat--tatgtataacattt |
53054339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 146 - 281
Target Start/End: Complemental strand, 53341427 - 53341292
Alignment:
| Q |
146 |
agaataacatcaactttttcttcaaccatttctctatcggcaagtgtaatgggtttaccatatagtttttctaagttggagaggccgtttgaagagaggc |
245 |
Q |
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| T |
53341427 |
agaatatcatccgctttttcttcaaccatttctctatcggcaagtgtaatgggtttaccgtatagtttttcaaggttggagaggccgtatgaagagagac |
53341328 |
T |
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| Q |
246 |
cgaaggagaggagggaagtgtaagcttccatgtaaa |
281 |
Q |
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| T |
53341327 |
cgaaggagggaagggaagtgtaagcttccatgtaaa |
53341292 |
T |
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