View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_1 (Length: 836)
Name: NF10829A_low_1
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 12603005 - 12602537
Alignment:
| Q |
18 |
acatcacatcgacattgttaactaaaggattgcataaaagcatgttaagatactgactatattcatgttatggcagaatttcagaaccaggtagtgattt |
117 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12603005 |
acattacattgacattgttaactaaaggattgcataaaagcatgttaagatactgactatattcattttatggcagaatttcagaaccaggtagtgattt |
12602906 |
T |
|
| Q |
118 |
tgaattagaaaattggcacagttatgtgattaacctgacatgattccctataaacttnnnnnnnnnnnnnnatctacctcgtacaaaaatagaattaact |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
12602905 |
tgaattagaaaattggcacagttatgcgattaacctgacatgattccctataaactttgtgtgtgtgtgtgatctgcctcatacaaaaatagaattaact |
12602806 |
T |
|
| Q |
218 |
ccattacctatcgatgaacttatccaattagcttactagcatatccttcccatgattccgagtcaaaatgcaaaggtttacttgttggagatattccgag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| | ||| ||| |
|
|
| T |
12602805 |
ccattacctatcgatgaacttatccaattagcttactagcatatccttcccatgattccgagtcaaaattcaaaggtttactggtgggagctgttctgag |
12602706 |
T |
|
| Q |
318 |
gagaactcgctaaacatgttcctccagtatcggtcacaggaaccttgtgtattgttcctccagattcgggcacaggatctgttcgtccagtttcgggcac |
417 |
Q |
| |
|
||| || | ||||||||||||||||||| |||| ||||||||| || | |||||||||||||| ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
12602705 |
gagcacactctaaacatgttcctccagtttcgggcacaggaactttttttattgttcctccagtttcaggcacaggaactgttcgtccagtttcgggcac |
12602606 |
T |
|
| Q |
418 |
acgaacnnnnnnnattgttcctccagtttcaggcacaggaactgttcgtccagttttgggcacacgaac |
486 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12602605 |
acgaactttttgtattgttcctccagtttcaggcacaggaactgttcgtccagtttcgggcacacgaac |
12602537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 535 - 815
Target Start/End: Complemental strand, 12602424 - 12602144
Alignment:
| Q |
535 |
cagccctcctccaaacttgaactattcccttaaccaattcagatatgctagcttactacttgtgtcattcaaggaatcagtctcatgagcacggagagtt |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12602424 |
cagccctcctccaaacttgaactattcccttaaccaattcagatatgctagcttactacttgtgtcattcaaggaatcagtctcaggagcacggagagtt |
12602325 |
T |
|
| Q |
635 |
attgcataaagcagtgtgcttttgaacaaagttcagggaattccttcaagttaaaaacagtttcaaaaaatgttaaacaatccaaaatgcatcccacctt |
734 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12602324 |
attgcataaagcagtgtgcttttgaacaaaattcagggaattccttcaagttaaaaacagtttcaaaaaatgttaaacaatccaaaatgcatcccaccta |
12602225 |
T |
|
| Q |
735 |
atcttagaattctgccataacatgaatataaatccgtatattaacatgctatcccgcaatcaacattgttaacgttagtca |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12602224 |
atcttagaattctgccataacatgaatataaatccgtatattaacatgctatcccgcaatcaacattgttaacgttagtca |
12602144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 12602626 - 12602474
Alignment:
| Q |
334 |
tgttcctccagtatcggtcacaggaaccttgtgtattgttcctccagattcgggcacaggatctgttcgtccagtttcgggcacacgaacnnnnnnnatt |
433 |
Q |
| |
|
||||| |||||| |||| |||| |||| || |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
12602626 |
tgttcgtccagtttcgggcacacgaactttttgtattgttcctccagtttcaggcacaggaactgttcgtccagtttcgggcacacgaactttttgtatt |
12602527 |
T |
|
| Q |
434 |
gttcctccagtttcaggcacaggaactgttcgtccagttttgggcacacgaac |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12602526 |
gttcctccagtttcaggcacaggaactgttcgtccagtttcgggcacacgaac |
12602474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University