View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_11 (Length: 557)
Name: NF10829A_low_11
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 12603005 - 12602600
Alignment:
| Q |
18 |
acatcacatcgacattgttaactaaaggattgcataaaagcatgttaagatactgactatattcatgttatggcagaatttcagaaccaggtagtgattt |
117 |
Q |
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| T |
12603005 |
acattacattgacattgttaactaaaggattgcataaaagcatgttaagatactgactatattcattttatggcagaatttcagaaccaggtagtgattt |
12602906 |
T |
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| Q |
118 |
tgaattagaaaattggcacagttatgtgattaacctgacatgattccctataaacttnnnnnnnnnnnnnnatctacctcgtacaaaaatagaattaact |
217 |
Q |
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| T |
12602905 |
tgaattagaaaattggcacagttatgcgattaacctgacatgattccctataaactttgtgtgtgtgtgtgatctgcctcatacaaaaatagaattaact |
12602806 |
T |
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| Q |
218 |
ccattacctatcgatgaacttatccaattagcttactagcatatccttcccatgattccgagtcaaaattcaaaggtttactggtgggagctgttctgag |
317 |
Q |
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| T |
12602805 |
ccattacctatcgatgaacttatccaattagcttactagcatatccttcccatgattccgagtcaaaattcaaaggtttactggtgggagctgttctgag |
12602706 |
T |
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| Q |
318 |
gagcacactctaaacatgttcctccagtttcgggcacaggaacnnnnnnnattgttcctccagtttcaggcacaggaactgttcgtccagttttgggcac |
417 |
Q |
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| T |
12602705 |
gagcacactctaaacatgttcctccagtttcgggcacaggaactttttttattgttcctccagtttcaggcacaggaactgttcgtccagtttcgggcac |
12602606 |
T |
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| Q |
418 |
acgaac |
423 |
Q |
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| T |
12602605 |
acgaac |
12602600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 12602424 - 12602340
Alignment:
| Q |
472 |
cagccctcctccaaacttgaactattcccttaaccaattcagatatgctagcttactacttgtgtcattcaaggaatcagtctca |
556 |
Q |
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| T |
12602424 |
cagccctcctccaaacttgaactattcccttaaccaattcagatatgctagcttactacttgtgtcattcaaggaatcagtctca |
12602340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 334 - 423
Target Start/End: Complemental strand, 12602563 - 12602474
Alignment:
| Q |
334 |
tgttcctccagtttcgggcacaggaacnnnnnnnattgttcctccagtttcaggcacaggaactgttcgtccagttttgggcacacgaac |
423 |
Q |
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| T |
12602563 |
tgttcgtccagtttcgggcacacgaactttttgtattgttcctccagtttcaggcacaggaactgttcgtccagtttcgggcacacgaac |
12602474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 334 - 423
Target Start/End: Complemental strand, 12602626 - 12602537
Alignment:
| Q |
334 |
tgttcctccagtttcgggcacaggaacnnnnnnnattgttcctccagtttcaggcacaggaactgttcgtccagttttgggcacacgaac |
423 |
Q |
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| T |
12602626 |
tgttcgtccagtttcgggcacacgaactttttgtattgttcctccagtttcaggcacaggaactgttcgtccagtttcgggcacacgaac |
12602537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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