View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_112 (Length: 357)

Name: NF10829A_low_112
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_112
NF10829A_low_112
[»] chr6 (26 HSPs)
chr6 (6-176)||(15576518-15576688)
chr6 (178-355)||(25991852-25992029)
chr6 (175-355)||(5994698-5994879)
chr6 (176-304)||(23925335-23925463)
chr6 (176-308)||(25550295-25550427)
chr6 (175-355)||(33298084-33298263)
chr6 (176-308)||(5004061-5004193)
chr6 (176-308)||(13825703-13825835)
chr6 (176-308)||(30824462-30824594)
chr6 (176-308)||(25506474-25506606)
chr6 (176-307)||(35091610-35091741)
chr6 (176-308)||(11279837-11279969)
chr6 (175-305)||(15391547-15391677)
chr6 (174-280)||(13490191-13490297)
chr6 (38-172)||(15574462-15574599)
chr6 (176-228)||(5489132-5489184)
chr6 (8-79)||(12972811-12972883)
chr6 (175-237)||(11053701-11053764)
chr6 (6-110)||(16526916-16527021)
chr6 (235-303)||(26526640-26526708)
chr6 (176-237)||(30114444-30114505)
chr6 (118-172)||(17860886-17860940)
chr6 (282-355)||(5489051-5489124)
chr6 (246-299)||(15140726-15140779)
chr6 (246-299)||(23985047-23985100)
chr6 (246-299)||(28127457-28127510)
[»] chr4 (16 HSPs)
chr4 (175-355)||(12996475-12996655)
chr4 (174-355)||(52295602-52295784)
chr4 (176-355)||(27343577-27343756)
chr4 (175-308)||(8094215-8094348)
chr4 (176-308)||(8103021-8103153)
chr4 (176-308)||(4523613-4523745)
chr4 (176-308)||(21532238-21532369)
chr4 (176-301)||(12428418-12428543)
chr4 (176-249)||(10638328-10638400)
chr4 (175-270)||(33188765-33188859)
chr4 (176-301)||(3424331-3424454)
chr4 (274-355)||(10638404-10638485)
chr4 (231-280)||(12402907-12402956)
chr4 (227-299)||(19772241-19772313)
chr4 (38-84)||(15787861-15787907)
chr4 (246-299)||(19647352-19647405)
[»] scaffold0156 (1 HSPs)
scaffold0156 (176-355)||(35242-35421)
[»] scaffold0016 (1 HSPs)
scaffold0016 (175-355)||(23463-23644)
[»] scaffold0002 (1 HSPs)
scaffold0002 (176-308)||(121228-121360)
[»] chr8 (20 HSPs)
chr8 (176-308)||(17973565-17973697)
chr8 (175-308)||(39837495-39837628)
chr8 (176-308)||(25579745-25579877)
chr8 (176-308)||(30938282-30938414)
chr8 (176-305)||(39845541-39845670)
chr8 (175-354)||(26873490-26873670)
chr8 (176-354)||(26875940-26876119)
chr8 (175-308)||(17664573-17664706)
chr8 (176-308)||(1407006-1407138)
chr8 (176-308)||(4839715-4839847)
chr8 (176-308)||(17683729-17683861)
chr8 (10-172)||(16052707-16052873)
chr8 (175-278)||(4582203-4582306)
chr8 (175-237)||(6670710-6670772)
chr8 (7-89)||(22894959-22895042)
chr8 (176-233)||(6663042-6663099)
chr8 (176-233)||(6743444-6743501)
chr8 (10-111)||(28901768-28901869)
chr8 (246-302)||(23090611-23090667)
chr8 (246-302)||(25700273-25700329)
[»] chr7 (18 HSPs)
chr7 (175-355)||(10439936-10440116)
chr7 (176-307)||(18304326-18304457)
chr7 (176-308)||(12978455-12978587)
chr7 (175-308)||(4952330-4952463)
chr7 (175-308)||(13831499-13831632)
chr7 (175-308)||(13839530-13839663)
chr7 (176-272)||(30244775-30244871)
chr7 (175-237)||(4941581-4941643)
chr7 (6-172)||(21471316-21471486)
chr7 (175-301)||(21662962-21663089)
chr7 (176-280)||(30245568-30245672)
chr7 (184-280)||(30255420-30255516)
chr7 (20-172)||(5721920-5722077)
chr7 (13-84)||(7955803-7955875)
chr7 (247-302)||(1955691-1955746)
chr7 (246-299)||(20114066-20114119)
chr7 (246-299)||(38247996-38248049)
chr7 (38-74)||(1074089-1074125)
[»] chr3 (30 HSPs)
chr3 (176-355)||(50824352-50824535)
chr3 (176-355)||(50851325-50851508)
chr3 (175-351)||(14538494-14538671)
chr3 (175-355)||(27341220-27341401)
chr3 (175-308)||(8154577-8154710)
chr3 (176-355)||(2211239-2211418)
chr3 (175-308)||(41006555-41006688)
chr3 (175-308)||(41015335-41015468)
chr3 (175-308)||(9525367-9525500)
chr3 (176-308)||(9555041-9555173)
chr3 (175-301)||(17933654-17933780)
chr3 (176-308)||(28470151-28470282)
chr3 (178-302)||(43470492-43470615)
chr3 (175-301)||(17919198-17919324)
chr3 (176-240)||(17628265-17628329)
chr3 (175-301)||(16816145-16816269)
chr3 (176-302)||(21186747-21186872)
chr3 (180-278)||(18349560-18349658)
chr3 (175-278)||(8197659-8197762)
chr3 (9-172)||(11520659-11520826)
chr3 (176-272)||(30445-30541)
chr3 (176-270)||(18039011-18039105)
chr3 (246-299)||(13272670-13272723)
chr3 (246-299)||(4505979-4506032)
chr3 (261-302)||(16288692-16288733)
chr3 (246-299)||(17657630-17657683)
chr3 (246-299)||(27976552-27976605)
chr3 (245-301)||(1477758-1477814)
chr3 (175-203)||(6958978-6959006)
chr3 (255-299)||(17618130-17618174)
[»] scaffold0497 (1 HSPs)
scaffold0497 (176-355)||(10993-11171)
[»] chr5 (33 HSPs)
chr5 (176-355)||(29186164-29186343)
chr5 (175-308)||(20372846-20372979)
chr5 (176-308)||(20398568-20398700)
chr5 (175-349)||(23349968-23350142)
chr5 (175-308)||(24956779-24956912)
chr5 (175-308)||(24965242-24965375)
chr5 (176-308)||(43597979-43598111)
chr5 (176-308)||(43603471-43603603)
chr5 (176-308)||(43608963-43609095)
chr5 (173-308)||(1728092-1728227)
chr5 (176-355)||(31410890-31411069)
chr5 (175-308)||(28852549-28852682)
chr5 (176-308)||(28843940-28844072)
chr5 (176-303)||(31421789-31421916)
chr5 (176-287)||(19223555-19223666)
chr5 (6-79)||(24841379-24841453)
chr5 (6-172)||(17027056-17027225)
chr5 (179-272)||(41099745-41099838)
chr5 (10-92)||(22754558-22754641)
chr5 (10-101)||(11274779-11274871)
chr5 (255-301)||(23028007-23028053)
chr5 (254-300)||(23037923-23037969)
chr5 (18-91)||(19331173-19331247)
chr5 (176-225)||(21929236-21929285)
chr5 (246-299)||(21988620-21988673)
chr5 (246-299)||(21997264-21997317)
chr5 (246-299)||(23606368-23606421)
chr5 (246-299)||(23635076-23635129)
chr5 (246-299)||(23829022-23829075)
chr5 (246-299)||(23837763-23837816)
chr5 (246-299)||(31550458-31550511)
chr5 (246-302)||(21852579-21852635)
chr5 (246-302)||(21869103-21869159)
[»] scaffold0632 (1 HSPs)
scaffold0632 (176-355)||(4390-4570)
[»] scaffold0111 (1 HSPs)
scaffold0111 (176-349)||(33035-33208)
[»] scaffold0173 (1 HSPs)
scaffold0173 (175-355)||(815-995)
[»] scaffold0083 (1 HSPs)
scaffold0083 (176-304)||(15813-15941)
[»] chr2 (30 HSPs)
chr2 (204-355)||(35037884-35038035)
chr2 (175-308)||(15944490-15944623)
chr2 (175-308)||(35138592-35138725)
chr2 (175-308)||(35146928-35147061)
chr2 (175-308)||(41233777-41233910)
chr2 (176-308)||(14582925-14583057)
chr2 (176-308)||(15953005-15953137)
chr2 (176-308)||(38168290-38168422)
chr2 (175-308)||(20621517-20621650)
chr2 (175-308)||(42565862-42565995)
chr2 (176-308)||(42574486-42574618)
chr2 (176-278)||(17687361-17687463)
chr2 (176-304)||(20372251-20372378)
chr2 (176-287)||(25483601-25483712)
chr2 (176-287)||(25491207-25491318)
chr2 (176-271)||(44372705-44372800)
chr2 (176-271)||(44388616-44388711)
chr2 (176-301)||(35303737-35303862)
chr2 (176-280)||(27606606-27606709)
chr2 (176-278)||(24285696-24285798)
chr2 (176-278)||(42249418-42249520)
chr2 (178-278)||(26903296-26903396)
chr2 (176-278)||(34070567-34070669)
chr2 (175-278)||(24292371-24292475)
chr2 (8-74)||(39730111-39730178)
chr2 (225-302)||(18989312-18989389)
chr2 (7-92)||(22389179-22389264)
chr2 (176-237)||(21322814-21322875)
chr2 (176-226)||(20917520-20917570)
chr2 (246-299)||(27683381-27683434)
[»] chr1 (20 HSPs)
chr1 (175-308)||(3432823-3432956)
chr1 (175-308)||(31548522-31548655)
chr1 (176-308)||(31539954-31540086)
chr1 (176-355)||(32137640-32137819)
chr1 (176-308)||(35103997-35104129)
chr1 (176-347)||(41746586-41746758)
chr1 (175-301)||(29221429-29221554)
chr1 (176-301)||(44320132-44320257)
chr1 (176-278)||(21498861-21498963)
chr1 (13-101)||(23223131-23223220)
chr1 (178-270)||(51058359-51058450)
chr1 (178-293)||(28457556-28457673)
chr1 (252-301)||(8241438-8241487)
chr1 (227-299)||(8579341-8579413)
chr1 (295-355)||(13450142-13450202)
chr1 (176-210)||(20314058-20314092)
chr1 (16-93)||(31313019-31313097)
chr1 (246-299)||(12465698-12465751)
chr1 (176-237)||(52100017-52100078)
chr1 (9-64)||(14397286-14397342)
[»] scaffold0209 (1 HSPs)
scaffold0209 (176-308)||(17-149)
[»] scaffold0039 (1 HSPs)
scaffold0039 (176-267)||(40807-40898)
[»] scaffold0170 (1 HSPs)
scaffold0170 (176-302)||(7129-7255)
[»] scaffold0431 (1 HSPs)
scaffold0431 (176-301)||(139-264)
[»] scaffold0222 (1 HSPs)
scaffold0222 (176-301)||(20422-20547)
[»] scaffold0863 (1 HSPs)
scaffold0863 (175-278)||(335-438)
[»] scaffold0991 (1 HSPs)
scaffold0991 (176-269)||(345-438)
[»] scaffold0048 (1 HSPs)
scaffold0048 (176-248)||(7622-7694)
[»] scaffold0015 (1 HSPs)
scaffold0015 (174-270)||(192526-192622)
[»] scaffold0044 (2 HSPs)
scaffold0044 (175-278)||(65501-65604)
scaffold0044 (175-278)||(81749-81852)
[»] scaffold0389 (1 HSPs)
scaffold0389 (175-278)||(415-518)
[»] scaffold0290 (1 HSPs)
scaffold0290 (225-302)||(15760-15837)
[»] scaffold1487 (1 HSPs)
scaffold1487 (183-222)||(762-801)
[»] scaffold0514 (1 HSPs)
scaffold0514 (175-237)||(10912-10974)
[»] scaffold0315 (1 HSPs)
scaffold0315 (246-302)||(10595-10651)
[»] scaffold0027 (2 HSPs)
scaffold0027 (244-355)||(65589-65701)
scaffold0027 (175-209)||(65710-65744)
[»] scaffold0484 (1 HSPs)
scaffold0484 (176-225)||(11457-11507)
[»] scaffold0455 (1 HSPs)
scaffold0455 (246-299)||(6056-6109)
[»] scaffold0047 (1 HSPs)
scaffold0047 (246-299)||(59736-59789)
[»] scaffold0007 (1 HSPs)
scaffold0007 (176-302)||(61288-61418)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 15576518 - 15576688
Alignment:
Q  6 gggctggtcaaggcatttgtcacactcagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggcctatatcaccat 105  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  15576518 gggctggtcaaggcatttgtcacactcagccatcatgtgattgtaccttactatgagattgaagcaattcgaaatagacattcaaggtctatatcaccat 15576617  T
Q  106 acacaccgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagtatgct 176  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15576618 acacactggaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagtatgct 15576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 178 - 355
Target Start/End: Original strand, 25991852 - 25992029
Alignment:
Q  178 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagag 277  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  25991852 tcataccccaaatgttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagaagaaatttcggtagag 25991951  T
Q  278 aggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||| |||||||||||| |||||||||||||| |||  || | || ||| ||||| |||| || ||||||||| |||||    
T  25991952 aggttactttgaagtacctcattttttattcagagtcggaccctcttctctctttatttactctttatttcattattt 25992029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 175 - 355
Target Start/End: Original strand, 5994698 - 5994879
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| || |    
T  5994698 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacaaaattttggca 5994797  T
Q  275 gagaggatactttgaagtaactcatttttt-attcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
     ||||| |||||||||||| |||||||||| |||| |||  |||| || |||||||||  |||||||||||||| |||||||    
T  5994798 aagaggttactttgaagtacctcattttttgattccgagtcgggccctcttccctctttgttttctttttattttagtattt 5994879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 23925335 - 23925463
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  23925335 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcatttttgacgaaatttcggtag 23925434  T
Q  276 agaggatactttgaagtaactcatttttt 304  Q
    ||| | |||||||||||| ||||||||||    
T  23925435 agatgttactttgaagtacctcatttttt 23925463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 25550295 - 25550427
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| || ||    
T  25550295 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcaaacgaaattttggcag 25550394  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  25550395 agaggttactttgaagtacctcattttttattc 25550427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 175 - 355
Target Start/End: Original strand, 33298084 - 33298263
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |    
T  33298084 ctgtcataccccaacttttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 33298183  T
Q  275 gagaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
     ||| | |||||||||||| |||||||||||||| |||  || | || ||| ||||| ||||| |||||||||||||||||    
T  33298184 aaga-gttactttgaagtacctcattttttattccgagtaggacccttttctctctttattttatttttatttcagtattt 33298263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 5004061 - 5004193
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  5004061 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 5004160  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
     |||| |||||||||||| ||||||||| ||||    
T  5004161 ggaggttactttgaagtacctcatttttgattc 5004193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 13825703 - 13825835
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  ||    
T  13825703 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcaggaattttcgtcgtttcagacgaaatttcgacag 13825802  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||| ||||    
T  13825803 agaggttactttgaagtacctcatttttgattc 13825835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 30824594 - 30824462
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |     
T  30824594 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30824495  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||| ||||    
T  30824494 agaggttactttgaagtacctcatttttgattc 30824462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 25506606 - 25506474
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||    
T  25506606 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgttttagacgaaatttcggcag 25506507  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||| || || ||||||||| ||||    
T  25506506 agaggttactttaaaatacctcatttttgattc 25506474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 35091741 - 35091610
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| || |     
T  35091741 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaa 35091642  T
Q  276 agaggatactttgaagtaactcattttttatt 307  Q
     |||| |||||||||||| |||||||||||||    
T  35091641 ggaggttactttgaagtacctcattttttatt 35091610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 11279837 - 11279969
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  11279837 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 11279936  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  11279937 agaggttactttgaagtacctcattttttattc 11279969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 175 - 305
Target Start/End: Complemental strand, 15391677 - 15391547
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||  |    
T  15391677 ctgtcatatcccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagccaggaattttcgtcgtttcagacgaaatttcgaca 15391578  T
Q  275 gagaggatactttgaagtaactcatttttta 305  Q
     ||||| |||||||||||| |||||||||||    
T  15391577 aagaggttactttgaagtacctcatttttta 15391547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 13490191 - 13490297
Alignment:
Q  174 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggt 273  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||  ||||||||||| |  |||||||| |||| ||||     
T  13490191 gctgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatctgtaaaaccgggaattttcgttatttcagacaaaatctcggc 13490290  T
Q  274 agagagg 280  Q
    |||||||    
T  13490291 agagagg 13490297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 15574599 - 15574462
Alignment:
Q  38 tcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggcctatatcaccatacacaccga---aggcattttcaaggttatca 134  Q
    ||||||||||||| ||| ||||||||||||||||||| || |||||| |||||||  |||||||  ||||||||  |   |||  ||||||||||||| |    
T  15574599 tcatgtgattgtatcttgctatgagattgaagcaattatacatagacattcaaggtttatatcattatacacacatatagaggacttttcaaggttataa 15574500  T
Q  135 cgtggttgaggttaaggtggggtatatttgagaaagta 172  Q
    ||||| ||||||||||||||| |||||||| |||||||    
T  15574499 cgtggctgaggttaaggtgggatatatttgggaaagta 15574462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 5489184 - 5489132
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5489184 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 5489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 12972811 - 12972883
Alignment:
Q  8 gctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaa 79  Q
    ||||||||||||||||| ||||||| | |||||||||||||||||||| ||||||||||||| ||||||||||    
T  12972811 gctggtcaaggcatttgccacactccaatcatcatgtgattgtaccttgctatgagattgaatcaattctaaa 12972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 11053701 - 11053764
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 237  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  11053701 ctgtcataccccaaattttgaccacttttttctatttttaccaaattttattcgtatttttaaa 11053764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 16527021 - 16526916
Alignment:
Q  6 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggcctatatcacca 104  Q
    |||||||||||| ||| | |||||||| |||| ||||||||||||||||| |||| | ||| ||||||||||||| |||| |||||||  ||||||| ||    
T  16527021 gggctggtcaagacatatttcacactccagtcgtcatgtgattgtacctttctataacattaaagcaattctaaacagacattcaaggtatatatcatca 16526922  T
Q  105 tacaca 110  Q
     |||||    
T  16526921 cacaca 16526916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 26526708 - 26526640
Alignment:
Q  235 aaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttt 303  Q
    |||||||||||||||| |||||||||||||||| |||| |||| || ||||||||| || |||||||||    
T  26526708 aaagtcgggaattttcgtcgtttcagacgaaatatcggcagagtggttactttgaattacctcattttt 26526640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 30114444 - 30114505
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 237  Q
    |||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  30114444 tgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 30114505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 17860886 - 17860940
Alignment:
Q  118 cattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 172  Q
    ||||||||||||||| |||||  ||||||||||||||| ||||||||| ||||||    
T  17860886 cattttcaaggttataacgtgactgaggttaaggtgggatatatttgaaaaagta 17860940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 355
Target Start/End: Complemental strand, 5489124 - 5489051
Alignment:
Q  282 tactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||||||||||  |||||||| ||||  ||  || | |||||||||||| |||||||||||||||||||||||    
T  5489124 tactttgaagtacttcatttttgattccaagtcggaccctgttccctctttattttctttttatttcagtattt 5489051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 15140726 - 15140779
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  15140726 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 15140779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 23985100 - 23985047
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23985100 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23985047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 28127510 - 28127457
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  28127510 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 28127457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 175 - 355
Target Start/End: Original strand, 12996475 - 12996655
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  12996475 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggta 12996574  T
Q  275 gagaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    |||||| |||||||||||| |||||||||||||| |||   | | || ||| |||||  ||||||||||||||||||||||    
T  12996575 gagaggttactttgaagtacctcattttttattccgagtcagtccctcttctctctttgttttctttttatttcagtattt 12996655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 174 - 355
Target Start/End: Original strand, 52295602 - 52295784
Alignment:
Q  174 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||     
T  52295602 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggc 52295701  T
Q  274 agagaggatactttgaagtaactcatttttt-attcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||||  |||||||||||| |||||||||| |||| |||  |||| || ||| ||||| |||||||||||||||||||||||    
T  52295702 agagagattactttgaagtacctcattttttgattccgagtcgggccctcttctctctttattttctttttatttcagtattt 52295784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 176 - 355
Target Start/End: Complemental strand, 27343756 - 27343577
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||    
T  27343756 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacag 27343657  T
Q  276 agaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||| |||||||||||| |||||||||||||| |||  || | || ||| ||||| |||||||||||||||||||||||    
T  27343656 agaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttattttctttttatttcagtattt 27343577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 8094348 - 8094215
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |    
T  8094348 ctgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 8094249  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
     ||||| |||||||||||| ||||||||| ||||    
T  8094248 aagaggttactttgaagtacctcatttttgattc 8094215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 8103153 - 8103021
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |     
T  8103153 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8103054  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||| ||||    
T  8103053 agaggttactttgaagtacctcatttttgattc 8103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 4523745 - 4523613
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |     
T  4523745 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 4523646  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  4523645 agaggttactttgaagtacctcattttttattc 4523613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 21532369 - 21532238
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |     
T  21532369 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgaca- 21532271  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    | ||  |||||||||||| ||||||||||||||    
T  21532270 aaagattactttgaagtacctcattttttattc 21532238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 12428543 - 12428418
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | | ||||||| |  |||||||||||||||||        
T  12428543 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 12428444  T
Q  276 agaggatactttgaagtaactcattt 301  Q
    ||||  |||||||||||| |||||||    
T  12428443 agagtttactttgaagtacctcattt 12428418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 10638328 - 10638400
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaatttt 249  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  10638328 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgta-ttttaaagtcgggaatttt 10638400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 33188765 - 33188859
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 270  Q
    |||||||||||||||||||||| |||||| |||||| ||| || ||||||| ||||||||||||  | |||||||| |||||||||||||||||||    
T  33188765 ctgtcataccccaaattttgacaactttt-tctatttttatcctttttatttgtatttttaaagctgagaattttcgtcgtttcagacgaaatttc 33188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 3424331 - 3424454
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||| || ||||||||| | |||||| |||||||| || ||| |||| |  |||  ||| ||||| |||||||||||||||       
T  3424331 tgtcataccccaaattttgatcatttttctctaattttaccccttttattcttactttaaaagccaagaaagttcgtcgttccagacgaaatttcgg--c 3424428  T
Q  276 agaggatactttgaagtaactcattt 301  Q
    ||||| |||||||||||| |||||||    
T  3424429 agaggttactttgaagtacctcattt 3424454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 10638404 - 10638485
Alignment:
Q  274 agagaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||||| |||||||||||| |||||||||||||| |||  || | || | | ||||| |||||||||||||||||||||||    
T  10638404 agagaggttactttgaagtacctcattttttattccgagtcggaccctctcctctctttattttctttttatttcagtattt 10638485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 12402907 - 12402956
Alignment:
Q  231 ttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagagg 280  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  12402907 ttttaaagtcaggaattttcgtcgtttcagacgaaatttcggcagagagg 12402956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 19772241 - 19772313
Alignment:
Q  227 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    ||||||| ||||||| |  |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  19772241 gtattttaaaagtcgcgttttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 19772313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 15787861 - 15787907
Alignment:
Q  38 tcatgtgattgtaccttactatgagattgaagcaattctaaatagac 84  Q
    |||| |||||||||||| ||||||||||||| ||||| |||||||||    
T  15787861 tcatttgattgtaccttgctatgagattgaatcaattttaaatagac 15787907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 19647405 - 19647352
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  19647405 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 19647352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 176 - 355
Target Start/End: Complemental strand, 35421 - 35242
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |     
T  35421 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 35322  T
Q  276 agaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||| |||||||||||| |||||||||||||| |||  |||| || ||| || || |||||||||||||||||||||||    
T  35321 agaggttactttgaagtacctcattttttattccgagtcgggccctcttcgctttttattttctttttatttcagtattt 35242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 175 - 355
Target Start/End: Original strand, 23463 - 23644
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttt-taaagtcgggaattttcatcgtttcagacgaaatttcggt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||    
T  23463 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattttttaaagtcgggaattttcatcatttctgacgaaatttcggt 23562  T
Q  274 agagaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||||| |||||||||||| ||||||||| |||| |||  |||| || |||||||||  |||||||||||||| |||||||    
T  23563 agagaggttactttgaagtacctcatttttgattccgagtcgggccctcttccctctttgttttctttttatttaagtattt 23644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 121228 - 121360
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  121228 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggtag 121327  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| ||||||||||||| |||||||| ||||    
T  121328 agaggttactttgaagtaaatcatttttgattc 121360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 17973565 - 17973697
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  17973565 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17973664  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  17973665 agaggttactttgaagtacctcattttttattc 17973697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 39837628 - 39837495
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  39837628 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 39837529  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
     ||||| |||||||||||| ||||||||||||||    
T  39837528 aagaggttactttgaagtacctcattttttattc 39837495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 25579877 - 25579745
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  25579877 tgtcataccctaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 25579778  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  25579777 agaggttactttgaagtacctcattttttattc 25579745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 30938282 - 30938414
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  30938282 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30938381  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
     |||| |||||||||||| ||||||||| ||||    
T  30938382 ggaggttactttgaagtacctcatttttgattc 30938414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 176 - 305
Target Start/End: Complemental strand, 39845670 - 39845541
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |     
T  39845670 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 39845571  T
Q  276 agaggatactttgaagtaactcatttttta 305  Q
    ||||| |||||||||||| |||||||||||    
T  39845570 agaggttactttgaagtacctcatttttta 39845541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 175 - 354
Target Start/End: Complemental strand, 26873670 - 26873490
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||  |    
T  26873670 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttgtaatgtcggaaattttcgtcgtttcagacgaaatttcgaca 26873571  T
Q  275 gagaggatactttgaagtaactcatttttt-attcggagctgggctctgttccctcttcattttctttttatttcagtatt 354  Q
     ||||| |||||| ||||| || ||||||| |||| |||  ||||  | ||| ||||| ||||||||||||||||||||||    
T  26873570 aagaggttactttaaagtaccttattttttgattccgagtagggccgtcttctctctttattttctttttatttcagtatt 26873490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 176 - 354
Target Start/End: Complemental strand, 26876119 - 26875940
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||  |     
T  26876119 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaatgtcggaaatttttgtcgtttcagacgaaatttcgacaa 26876020  T
Q  276 agaggatactttgaagtaactcatttttt-attcggagctgggctctgttccctcttcattttctttttatttcagtatt 354  Q
    ||||| |||||| || || |||||||||| |||| |||  ||||  | ||| ||||| ||||||||||||||||||||||    
T  26876019 agaggttactttaaaatacctcattttttgattccgagtagggccatcttctctctttattttctttttatttcagtatt 26875940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 17664706 - 17664573
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |  |    
T  17664706 ctgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcatcgtttcagacgaaattttgaca 17664607  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
     ||| | |||||||||||| ||||||||||||||    
T  17664606 aagaagttactttgaagtacctcattttttattc 17664573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 1407138 - 1407006
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  1407138 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgtgaattttcgccgtttcagacgaaattttggcaa 1407039  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  1407038 agaggttactttgaagtacctcattttttattc 1407006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 4839847 - 4839715
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |     
T  4839847 tgtcataccccaaattttgaccgcttttctctattcttacctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 4839748  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||| | |||||||||||| ||||||||| ||||    
T  4839747 agaagttactttgaagtacctcatttttgattc 4839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 17683861 - 17683729
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |  |     
T  17683861 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcgtcgtttcagacgaaattttgacaa 17683762  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||| | |||||||||||| ||||||||||||||    
T  17683761 agaagttactttgaagtacctcattttttattc 17683729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 16052707 - 16052873
Alignment:
Q  10 tggtcaaggcatttgtcacact-cagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggcctatatcaccataca 108  Q
    ||||||||||||||| |||||| || || ||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||   ||||||| || |||    
T  16052707 tggtcaaggcatttgccacacttcaatcgtcatgtgattgtaccttgctatgagattgaagcaattcgaaacagacattcaagaaatatatcatcacaca 16052806  T
Q  109 caccga---aggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 172  Q
    ||   |   |||| ||||||||||||| |||||  ||||| ||||||| | |||| || ||||||||    
T  16052807 cataaatagaggccttttcaaggttataacgtgactgaggataaggtgagatatagtttagaaagta 16052873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 278
Target Start/End: Original strand, 4582203 - 4582306
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||  |||||||||||||||||||||||| |||| |||||| ||| || |||||||  ||| ||| | | || ||| |||||||||||||| |    
T  4582203 ctgtcataccttaaattttgaccacttttctctatttttacacattttgttcatacttttaaaaccggaaatgtccgtcattttagacgaaatttcggca 4582302  T
Q  275 gaga 278  Q
    ||||    
T  4582303 gaga 4582306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 6670710 - 6670772
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 237  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  6670710 ctgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 6670772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 22894959 - 22895042
Alignment:
Q  7 ggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttca 89  Q
    |||| ||||||||||||| ||||||| |||  || | |||||||||||| ||||||||||||||| |||||||| |||| ||||    
T  22894959 ggctagtcaaggcatttgccacactccagttgtcgtatgattgtacctttctatgagattgaagccattctaaacagacattca 22895042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 6663042 - 6663099
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttt 233  Q
    |||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||||||    
T  6663042 tgtcataccccaaattttaaccactttt-tctatttttaccaaattttattcgtatttt 6663099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 6743444 - 6743501
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttt 233  Q
    |||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||||||    
T  6743444 tgtcataccccaaattttaaccactttt-tctatttttaccaaattttattcgtatttt 6743501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 28901768 - 28901869
Alignment:
Q  10 tggtcaaggcatttgtcacac-tcagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggcctatatcaccataca 108  Q
    ||||||||| ||||||||| | |  ||| ||||||||||||| ||| ||| ||||||||||| ||||||||||||| || ||||  ||||||| || |||    
T  28901768 tggtcaaggaatttgtcactcgtttgtcgtcatgtgattgtatcttgctacgagattgaagc-attctaaatagacttttaaggtatatatcatcacaca 28901866  T
Q  109 cac 111  Q
    |||    
T  28901867 cac 28901869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 23090611 - 23090667
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 302  Q
    |||| ||| ||| ||||||||||| |  |||||||||||||||||||| ||||||||    
T  23090611 ttttaatcattttagacgaaatttggacagagaggatactttgaagtacctcatttt 23090667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 25700273 - 25700329
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 302  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  25700273 ttttaatcatttcaaacgaaatttcggaagggaggttactttgaagtacctcatttt 25700329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 175 - 355
Target Start/End: Original strand, 10439936 - 10440116
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  10439936 ctgtcataccccaaattttgaccacttttctctattcttgcccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 10440035  T
Q  275 gagaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    |||||| |||||| ||||| |||||||||||||| |||   | | || ||  ||||| |||||||||||||||||||||||    
T  10440036 gagaggttactttaaagtacctcattttttattccgagtcagaccctcttttctctttattttctttttatttcagtattt 10440116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 18304457 - 18304326
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  18304457 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 18304358  T
Q  276 agaggatactttgaagtaactcattttttatt 307  Q
    ||||| |||||||||||| |||||||||||||    
T  18304357 agaggttactttgaagtacctcattttttatt 18304326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 12978455 - 12978587
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  12978455 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 12978554  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
     |||| |||||||||||| ||||||||| ||||    
T  12978555 ggaggttactttgaagtacctcatttttgattc 12978587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 4952463 - 4952330
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || |    
T  4952463 ctgtcatacctcaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaattttggca 4952364  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
     ||||| |||||||||||| ||||||||||||||    
T  4952363 aagaggttactttgaagtacctcattttttattc 4952330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 13831499 - 13831632
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  13831499 ctgtcataccctaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 13831598  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
     ||||| |||||||||||| ||||||||||||||    
T  13831599 aagaggttactttgaagtacctcattttttattc 13831632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 13839530 - 13839663
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  13839530 ctgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 13839629  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
     ||||| |||||||||||| ||||||||||||||    
T  13839630 aagaggttactttgaagtacctcattttttattc 13839663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 30244775 - 30244871
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 272  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| | ||||||| || ||||||||    
T  30244775 tgtcatacctcaaattttgaccacttttctctatttttatccattttattcgtatttttaaagtcaggaattttcgttgtttcagtcgtaatttcgg 30244871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 4941643 - 4941581
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4941643 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 4941581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 21471486 - 21471316
Alignment:
Q  6 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggcctatatcacca 104  Q
    ||||||||||||||||||| || |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |  ||||||| ||    
T  21471486 gggctggtcaaggcatttgccatactccagtcgtcatgtgattgtaccttgctatgagattgaagcaattctaaatagacattcaatgtatatatcatca 21471387  T
Q  105 tacacac---cgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 172  Q
     ||||||   | ||||  ||||||||||||| |||||  | |||||||| | || |||||||  |||||||    
T  21471386 cacacacatacaaaggacttttcaaggttataacgtgactaaggttaagttaggatatattttggaaagta 21471316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 21663089 - 21662962
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtat-ttttaaagtcgggaattttcatcgtttcagacgaaatttcggt 273  Q
    ||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||| |||||||| || || | ||| |||||| ||||||||||||       
T  21663089 ctgtcataccccaaattttgatcacttttatctgtttttacccattttattcgtattttttaaagccgagagtcttcgtcgttttagacgaaatttcaac 21662990  T
Q  274 agagaggatactttgaagtaactcattt 301  Q
    || |||| |||||||||||| |||||||    
T  21662989 agggaggttactttgaagtacctcattt 21662962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 280
Target Start/End: Original strand, 30245568 - 30245672
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||| | ||| | ||||||| | ||||||| || |||||||| ||    
T  30245568 tgtcatacccaaatttttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttcggaag 30245667  T
Q  276 agagg 280  Q
    |||||    
T  30245668 agagg 30245672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 30255420 - 30255516
Alignment:
Q  184 cccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagagg 280  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||| | ||||||| | ||||||| || |||||||| |||||||    
T  30255420 cccaaattttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttcggcagagagg 30255516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 5722077 - 5721920
Alignment:
Q  20 atttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggcctatatcaccatacacaccga---a 115  Q
    ||||||||||||| |||  |||| |||||||| ||| ||||||||||||||||||||||||||| | ||||||||  |||| |||| ||||||  |   |    
T  5722077 atttgtcacactccagtagtcatttgattgtatcttgctatgagattgaagcaattctaaataggcattcaaggcacatattaccagacacacatataga 5721978  T
Q  116 ggcattttcaaggttatcacgtggttgaggtt-aaggtggggtatatttgagaaagta 172  Q
    ||  ||||||||||||| |||||| | ||||| |||||||| ||||||| ||||||||    
T  5721977 ggttttttcaaggttataacgtggcttaggttaaaggtgggatatattttagaaagta 5721920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 7955875 - 7955803
Alignment:
Q  13 tcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagac 84  Q
    |||||||||||| | ||||| ||||||||||||||||||||||  ||||||| | ||||||||| ||| ||||    
T  7955875 tcaaggcatttgccccactccagtcatcatgtgattgtaccttgttatgagactaaagcaattccaaacagac 7955803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 1955746 - 1955691
Alignment:
Q  247 tttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 302  Q
    |||| ||||||||||| ||||||||| ||||||| |||||||||| | ||||||||    
T  1955746 tttcgtcgtttcagacaaaatttcggcagagaggttactttgaagcacctcatttt 1955691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 20114119 - 20114066
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  20114119 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 20114066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 38247996 - 38248049
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  38247996 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 38248049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 1074125 - 1074089
Alignment:
Q  38 tcatgtgattgtaccttactatgagattgaagcaatt 74  Q
    |||||||||||||||||  ||||||||||||||||||    
T  1074125 tcatgtgattgtaccttgttatgagattgaagcaatt 1074089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 176 - 355
Target Start/End: Original strand, 50824352 - 50824535
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||    
T  50824352 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 50824451  T
Q  276 agaggatactttgaagtaactcattttttattcggagctgggctctgttccc----tcttcattttctttttatttcagtattt 355  Q
    ||||| |||||||||||| |||||||||||||| |||  || | || ||| |    |||| |||||||||||||||||||||||    
T  50824452 agaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttctttattttctttttatttcagtattt 50824535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 176 - 355
Target Start/End: Complemental strand, 50851508 - 50851325
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||    
T  50851508 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 50851409  T
Q  276 agaggatactttgaagtaactcattttttattcggagctgggctctgttccc----tcttcattttctttttatttcagtattt 355  Q
    ||||| |||||||||||| |||||||||||||| |||  || | || ||| |    |||| |||||||||||||||||||||||    
T  50851408 agaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttctttattttctttttatttcagtattt 50851325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 175 - 351
Target Start/End: Complemental strand, 14538671 - 14538494
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg-t 273  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||      
T  14538671 ctgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 14538572  T
Q  274 agagaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagt 351  Q
    | ||||| |||||||||||| |||||||||||||| |||  |||| || ||| ||||| |||||||||||||||||||    
T  14538571 aaagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctttttatttcagt 14538494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 175 - 355
Target Start/End: Complemental strand, 27341401 - 27341220
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |    
T  27341401 ctgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 27341302  T
Q  275 gagaggatactttgaagtaactca-ttttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    || ||| |||||||||||| |||| |||||||||| |||   ||| || ||||||||| ||||||||| |||||||||||||    
T  27341301 gaaaggttactttgaagtacctcatttttttattccgagtcaggccctcttccctctttattttctttctatttcagtattt 27341220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 8154710 - 8154577
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  8154710 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 8154611  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
     ||||| |||||||||||| ||||||||||||||    
T  8154610 aagaggttactttgaagtacctcattttttattc 8154577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 176 - 355
Target Start/End: Original strand, 2211239 - 2211418
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |     
T  2211239 tgtcataccctaaattttgaccacttttctctattcttacctattttattcgtatttttaaagtcaggaattttcgtcgtttaagacgaaatttcggcaa 2211338  T
Q  276 agaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||| || ||| || || |||||||||||||| |||   ||| || ||| ||||| |||||||||||||||||||||||    
T  2211339 agagggtattttaaaatacctcattttttattccgagtcaggccctcttctctctttattttctttttatttcagtattt 2211418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 41006555 - 41006688
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  41006555 ctgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41006654  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
      |||| |||||||||||| ||||||||| ||||    
T  41006655 aggaggttactttgaagtacctcatttttgattc 41006688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 41015335 - 41015468
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  41015335 ctgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41015434  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
      |||| |||||||||||| ||||||||| ||||    
T  41015435 aggaggttactttgaagtacctcatttttgattc 41015468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 9525500 - 9525367
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |    
T  9525500 ctgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggca 9525401  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
    || ||| |||||| || || ||||||||||||||    
T  9525400 gaaaggttactttaaaatacctcattttttattc 9525367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 9555173 - 9555041
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||| ||    
T  9555173 tgtcataccccaaattttgatcacttttctctattcttacccattttactcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9555074  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    | ||| |||||| || || ||||||||||||||    
T  9555073 aaaggttactttaaaatacctcattttttattc 9555041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 17933654 - 17933780
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||||        
T  17933654 ctgtcataccccaaattttgaccaattttctctatttttacccattttattcgtatttttaaagtcggaaattttcgttatttcagacgaaatttcttcg 17933753  T
Q  275 gagaggatactttgaagtaactcattt 301  Q
    |||||| |||||||||||| |||||||    
T  17933754 gagaggttactttgaagtacctcattt 17933780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 28470282 - 28470151
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||  |     
T  28470282 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcagaaattttcgtcgtttcagacgaaatttcgaca- 28470184  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    | ||  |||| ||||||| ||||||||||||||    
T  28470183 aaagattactatgaagtacctcattttttattc 28470151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 302
Target Start/End: Complemental strand, 43470615 - 43470492
Alignment:
Q  178 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagag 277  Q
    ||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||| || |||||||  ||||||||||||||||||||| ||||    
T  43470615 tcataccccaaattttgactactttt-tctatttttaccctttttattcgtatttttaaagccgagaattttattcgtttcagacgaaatttcggcagag 43470517  T
Q  278 aggatactttgaagtaactcatttt 302  Q
    ||| |||||||||||| ||||||||    
T  43470516 aggttactttgaagtacctcatttt 43470492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 17919198 - 17919324
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||  ||||||| |  |||||||||||||||||       
T  17919198 ctgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatttttaaagccgaaaattttcgttatttcagacgaaatttcgtcg 17919297  T
Q  275 gagaggatactttgaagtaactcattt 301  Q
    |||||| |||||| ||||| |||||||    
T  17919298 gagaggttactttaaagtacctcattt 17919324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 17628265 - 17628329
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 17628329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 16816269 - 16816145
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| ||||||| |  ||||||||||||||| |       
T  16816269 ctgtcataccc-aaattttgaccacttttctctatttttactcattttattcgtatttttaaagccggaaattttcgttatttcagacgaaattttgacg 16816171  T
Q  275 gagaggatactttgaagtaactcattt 301  Q
    |||||| |||||||||||| |||||||    
T  16816170 gagagg-tactttgaagtacctcattt 16816145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 176 - 302
Target Start/End: Original strand, 21186747 - 21186872
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||| ||| || ||| |||||||||||||| |||||||| || |||||||| | |||||| |||||||||||| ||    
T  21186747 tgtcataccccaaattttgaccacttttatctgtttttatccattttattcgtacttttaaagccgagaattttcgttgtttcaaacgaaatttcggcag 21186846  T
Q  276 agaggatactttgaagtaactcatttt 302  Q
     |||| || |||||| || ||||||||    
T  21186847 ggagg-tattttgaaatacctcatttt 21186872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 278
Target Start/End: Original strand, 18349560 - 18349658
Alignment:
Q  180 ataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagaga 278  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||||| |||| ||| | | |||||| |||||||||||||| |||||    
T  18349560 ataccccaaattttgacaacttttctctatttttacacattttattcgtacttttaaaatcggaaatgtccgtcgttttagacgaaatttcggcagaga 18349658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 175 - 278
Target Start/End: Complemental strand, 8197762 - 8197659
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||| ||||||||| |    
T  8197762 ctgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacaaaatttcggca 8197663  T
Q  275 gaga 278  Q
    ||||    
T  8197662 gaga 8197659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 11520826 - 11520659
Alignment:
Q  9 ctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggcctatatcaccatac 107  Q
    |||||||||||||||| ||||||| |||| |||| |||||||||||| ||||||||||||||||||| |||  |||| |||||||  |||||||  | ||    
T  11520826 ctggtcaaggcatttgccacactctagtcgtcatatgattgtaccttgctatgagattgaagcaattataagcagacattcaaggtatatatcataacac 11520727  T
Q  108 acaccga---aggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 172  Q
    |||   |   |||  ||||||||||||| |||||| |||||| |||||||| |||||||  |||||||    
T  11520726 acagacatagaggacttttcaaggttataacgtggatgaggtaaaggtgggatatatttaggaaagta 11520659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 30541 - 30445
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 272  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| || ||| |||||||  ||| ||| | | |||||| ||||||||||||||    
T  30541 tgtcataccccaaattttgaccacttttctctatttttacacattttgtttgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcgg 30445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 18039011 - 18039105
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 270  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| || | || |||   || | |||||||||||||||||    
T  18039011 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgttgtttcagacgaaatttc 18039105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 13272670 - 13272723
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| |||||||||||||||||||| |||||    
T  13272670 ttttaatcatttcagacaaaatttcggcagagaggatactttgaagtacctcat 13272723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 4506032 - 4505979
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  4506032 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 4505979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 16288692 - 16288733
Alignment:
Q  261 acgaaatttcggtagagaggatactttgaagtaactcatttt 302  Q
    |||||||||||| ||||||| |||||||||||| ||||||||    
T  16288692 acgaaatttcggcagagaggttactttgaagtacctcatttt 16288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 17657630 - 17657683
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  17657630 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 17657683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 27976552 - 27976605
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  27976552 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 27976605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 1477758 - 1477814
Alignment:
Q  245 attttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 301  Q
    ||||| ||| |||||||| ||||||||| || |||| |||||||||||| |||||||    
T  1477758 atttttatcatttcagacaaaatttcggcagggaggttactttgaagtacctcattt 1477814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 6959006 - 6958978
Alignment:
Q  175 ctgtcataccccaaattttgaccactttt 203  Q
    |||||||||||||||||||||||||||||    
T  6959006 ctgtcataccccaaattttgaccactttt 6958978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 17618174 - 17618130
Alignment:
Q  255 tttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||||||| ||||||||| || ||||||||||||||||| |||||    
T  17618174 tttcagacaaaatttcggcagggaggatactttgaagtacctcat 17618130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 176 - 355
Target Start/End: Original strand, 10993 - 11171
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| ||    
T  10993 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattgttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 11092  T
Q  276 agaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||| |||||||||||| ||||||||  |||| ||   |||| || ||| ||||| |||||||||||||||||||||||    
T  11093 agaggttactttgaagtacctcattttg-attccgaatcgggccctcttctctctttattttctttttatttcagtattt 11171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 176 - 355
Target Start/End: Complemental strand, 29186343 - 29186164
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |     
T  29186343 tgtcataccccaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 29186244  T
Q  276 agaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||| |||||||||||  |||||||||||||| |||  || | || ||| ||||| ||||| |||||||||||||||||    
T  29186243 agaggttactttgaagtgcctcattttttattccgagtcggacccttttctctctttattttatttttatttcagtattt 29186164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 20372979 - 20372846
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |    
T  20372979 ctgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 20372880  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
    |||||| |||||||||||| ||||||||||||||    
T  20372879 gagaggttactttgaagtacctcattttttattc 20372846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 20398700 - 20398568
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||    
T  20398700 tgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacag 20398601  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  20398600 agaggttactttgaagtacctcattttttattc 20398568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 175 - 349
Target Start/End: Complemental strand, 23350142 - 23349968
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |    
T  23350142 ctgtcataccccaaattttgaccatttttctctatttttacccattttattcgtatttttaaagtcgggaattctcgtcatttcagacgaaatttcggca 23350043  T
Q  275 gagaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttca 349  Q
     ||||| |||||||||||| |||||||||||||| |||  |||| || ||| ||||| ||||||| |||||||||    
T  23350042 aagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctctttatttca 23349968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 24956912 - 24956779
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  24956912 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 24956813  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
      |||| |||||||||||| ||||||||| ||||    
T  24956812 aggaggttactttgaagtacctcatttttgattc 24956779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 24965375 - 24965242
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  24965375 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 24965276  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
      |||| |||||||||||| ||||||||| ||||    
T  24965275 aggaggttactttgaagtacctcatttttgattc 24965242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 43598111 - 43597979
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |     
T  43598111 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43598012  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  43598011 agaggttactttgaagtacctcattttttattc 43597979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 43603603 - 43603471
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |     
T  43603603 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43603504  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  43603503 agaggttactttgaagtacctcattttttattc 43603471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 43609095 - 43608963
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |     
T  43609095 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43608996  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  43608995 agaggttactttgaagtacctcattttttattc 43608963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 173 - 308
Target Start/End: Complemental strand, 1728227 - 1728092
Alignment:
Q  173 tgctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 272  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |     
T  1728227 tgctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttga 1728128  T
Q  273 tagagaggatactttgaagtaactcattttttattc 308  Q
     | ||||| |||||||||||| ||||||||||||||    
T  1728127 caaagaggttactttgaagtacctcattttttattc 1728092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 176 - 355
Target Start/End: Original strand, 31410890 - 31411069
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||  ||||||||| |||||| | |||||||||||  |     
T  31410890 tgtcataccccaaattttgaccacatttctctattctaacccattttattcgtatttttaaagttaggaattttcgtcgtttaaaacgaaatttcgacaa 31410989  T
Q  276 agaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||| |||||||||||| ||||||||||||||  ||  |||| || ||| ||||| || ||||||||||||||||||||    
T  31410990 agaggttactttgaagtacctcattttttattctcagtcgggccctcttctctctttatcttctttttatttcagtattt 31411069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 28852549 - 28852682
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |    
T  28852549 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 28852648  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
     ||||| |||||||||||| ||||||||||||||    
T  28852649 aagaggttactttgaagtacctcattttttattc 28852682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 28843940 - 28844072
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  28843940 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 28844039  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  28844040 agaggttactttgaagtacctcattttttattc 28844072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 176 - 303
Target Start/End: Original strand, 31421789 - 31421916
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||  |     
T  31421789 tgtcatacccaaaattttgaccacttttctctattcttacccattttattcgtatttttgaagtcggaaattttcgtcgtttcagacaaaatttcgacaa 31421888  T
Q  276 agaggatactttgaagtaactcattttt 303  Q
    ||| | |||||||||||| |||||||||    
T  31421889 agatgttactttgaagtacctcattttt 31421916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 19223555 - 19223666
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| || |||||||||| ||||| |||  ||    
T  19223555 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattgtcgtcgtttcagatgaaatctcgacag 19223654  T
Q  276 agaggatacttt 287  Q
    ||||| ||||||    
T  19223655 agaggttacttt 19223666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 24841453 - 24841379
Alignment:
Q  6 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaa 79  Q
    ||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  24841453 gggctggtcaagggatttgtcacactttagtcatcatgtgattggaccttactatgagattgaagcaattctaaa 24841379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 17027225 - 17027056
Alignment:
Q  6 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggcctatatcacca 104  Q
    |||||| |||| |||||||||| |||| |||| |||||||||||| |||| |||||| ||| |||||||| |||| ||||  ||||||  | ||||| ||    
T  17027225 gggctgatcaatgcatttgtcatactccagtcgtcatgtgattgttccttcctatgacatttaagcaattataaacagacactcaaggtatttatcatca 17027126  T
Q  105 tacacac--cgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 172  Q
     ||||||    ||||| |||| |||||||| || || |||||||||||||||| || |||||||||||||    
T  17027125 cacacacatataaggccttttaaaggttataacatgattgaggttaaggtgggatacatttgagaaagta 17027056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 41099838 - 41099745
Alignment:
Q  179 cataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 272  Q
    ||||||||||||||||||||||||| |||||| |||| |||||  |||||| |||||||  ||| ||| | | |||||| ||||||||||||||    
T  41099838 cataccccaaattttgaccacttttatctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcgg 41099745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 22754641 - 22754558
Alignment:
Q  10 tggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaagg 92  Q
    ||||||| ||||||| ||||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||| || | |||||||    
T  22754641 tggtcaaagcatttgccacactccagtcgtcatgtgattgtaccttgctataagattgaagaaattctaaacaggcattcaagg 22754558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 11274779 - 11274871
Alignment:
Q  10 tggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggcctatatca 101  Q
    |||||||||| |||||||||||| |||  |||||||||| ||||||||||||| |||||||| |||| ||| | || |||||||  |||||||    
T  11274779 tggtcaaggcgtttgtcacactctagttgtcatgtgattttaccttactatgaaattgaagcgattccaaacaaacattcaaggtatatatca 11274871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 23028053 - 23028007
Alignment:
Q  255 tttcagacgaaatttcggtagagaggatactttgaagtaactcattt 301  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||    
T  23028053 tttcagacgaaatttcggcagagaggttactttgaagtacctcattt 23028007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 23037923 - 23037969
Alignment:
Q  254 gtttcagacgaaatttcggtagagaggatactttgaagtaactcatt 300  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  23037923 gtttcagacgaaatttcggcagagaggttactttgaagtacctcatt 23037969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 19331247 - 19331173
Alignment:
Q  18 gcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaag 91  Q
    ||||||||||||||| || | |||||||||| |||||| || |||||||||||||||| || | |||| ||||||    
T  19331247 gcatttgtcacactccagccgtcatgtgattctaccttgctttgagattgaagcaattatatagagacattcaag 19331173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 21929236 - 21929285
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttatt 225  Q
    ||||||||||||||||||||| | |||||||  || ||||||||||||||    
T  21929236 tgtcataccccaaattttgacaatttttctcgctttttacccattttatt 21929285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 21988673 - 21988620
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  21988673 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 21988620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 21997317 - 21997264
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  21997317 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 21997264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 23606421 - 23606368
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23606421 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23606368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 23635076 - 23635129
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23635076 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23635129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 23829075 - 23829022
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23829075 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23829022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 23837816 - 23837763
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23837816 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23837763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 31550511 - 31550458
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| ||||| |||||||||||||| |||||    
T  31550511 ttttaatcatttcagacaaaatttcggcagagatgatactttgaagtacctcat 31550458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 21852635 - 21852579
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 302  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  21852635 ttttaatcatttcaaacgaaatttcggcagggaggttactttgaagtacctcatttt 21852579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 21869159 - 21869103
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 302  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  21869159 ttttaatcatttcaaacgaaatttcggcagggaggttactttgaagtacctcatttt 21869103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 176 - 355
Target Start/End: Original strand, 4390 - 4570
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  ||    
T  4390 tgtcataccccaaattttgacattttttctctattcttacccattttattcatatttttaaagtcggtaattttcatcgtttcagacgaaatttcgacag 4489  T
Q  276 agaggatactttgaagtaactca-ttttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||| |||||||||||| |||| |||||||||| |||  |||| || ||| ||||| |||||||||||||||||||||||    
T  4490 agaggttactttgaagtacctcatttttttattccgagtcgggccctcttctctctttattttctttttatttcagtattt 4570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 176 - 349
Target Start/End: Original strand, 33035 - 33208
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |     
T  33035 tgtcataccccaaattttgaccacttttctctattcttacccattttatacgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 33134  T
Q  276 agaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttca 349  Q
    ||||| |||||| ||||| |||||||||||||| |||  || | || |||  |||| ||||||| |||||||||    
T  33135 agaggttactttaaagtacctcattttttattccgagtcggaccctcttctttctttattttctctttatttca 33208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 175 - 355
Target Start/End: Complemental strand, 995 - 815
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| |    
T  995 ctgtcataccccaaattttgaccagctttctctattcttacccattttattcgtatttttaaagctgggaattttcgtcgtttcagacgaaatttcggca 896  T
Q  275 gagaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    || ||| ||||||||| || ||||||||| |||| |||  |||| || ||| ||||| ||||||||||||||| |||||||    
T  895 gaaaggttactttgaaatacctcatttttgattccgagtcgggccctcttctctctttattttctttttattttagtattt 815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 15813 - 15941
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||    
T  15813 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 15912  T
Q  276 agaggatactttgaagtaactcatttttt 304  Q
    ||||| |||||||||||| ||||||||||    
T  15913 agaggttactttgaagtacctcatttttt 15941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 9e-52; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 204 - 355
Target Start/End: Original strand, 35037884 - 35038035
Alignment:
Q  204 ctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| || |||||||||    
T  35037884 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctcattttt 35037983  T
Q  304 tattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||| |||   ||| || ||||||||| |||||||||||||||||||||||    
T  35037984 tattccgagtcaggccctcttccctctttattttctttttatttcagtattt 35038035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 15944623 - 15944490
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  15944623 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 15944524  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
      |||| |||||||||||| ||||||||| ||||    
T  15944523 aggaggttactttgaagtacctcatttttgattc 15944490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 35138592 - 35138725
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  35138592 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 35138691  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
      |||| |||||||||||| ||||||||| ||||    
T  35138692 aggaggttactttgaagtacctcatttttgattc 35138725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 35146928 - 35147061
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  35146928 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 35147027  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
      |||| |||||||||||| ||||||||| ||||    
T  35147028 aggaggttactttgaagtacctcatttttgattc 35147061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 41233910 - 41233777
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  41233910 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41233811  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
      |||| |||||||||||| ||||||||| ||||    
T  41233810 aggaggttactttgaagtacctcatttttgattc 41233777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 14582925 - 14583057
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  14582925 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 14583024  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
     |||| |||||||||||| ||||||||| ||||    
T  14583025 ggaggttactttgaagtacctcatttttgattc 14583057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 15953137 - 15953005
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  15953137 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15953038  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
     |||| |||||||||||| ||||||||| ||||    
T  15953037 ggaggttactttgaagtacctcatttttgattc 15953005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 38168422 - 38168290
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  38168422 tgtcatactccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 38168323  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
     |||| |||||||||||| ||||||||| ||||    
T  38168322 ggaggttactttgaagtacctcatttttgattc 38168290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 20621517 - 20621650
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||  |    
T  20621517 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtgtttttgaagtcgggaattttcgtcgtttcagacaaaatttcgaca 20621616  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
     ||| | |||||||||||| ||||||||||||||    
T  20621617 aagatgttactttgaagtacctcattttttattc 20621650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 42565995 - 42565862
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |    
T  42565995 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 42565896  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
     ||||| |||||||||||| ||||||||||||||    
T  42565895 aagaggttactttgaagtacctcattttttattc 42565862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 42574618 - 42574486
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  42574618 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42574519  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  42574518 agaggttactttgaagtacctcattttttattc 42574486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 17687463 - 17687361
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  17687463 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17687364  T
Q  276 aga 278  Q
    |||    
T  17687363 aga 17687361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 176 - 304
Target Start/End: Complemental strand, 20372378 - 20372251
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |     
T  20372378 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgaca- 20372280  T
Q  276 agaggatactttgaagtaactcatttttt 304  Q
    | ||| |||||||||||| ||||||||||    
T  20372279 aaaggttactttgaagtacctcatttttt 20372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 25483601 - 25483712
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||  ||    
T  25483601 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25483700  T
Q  276 agaggatacttt 287  Q
    ||||| ||||||    
T  25483701 agaggttacttt 25483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 25491207 - 25491318
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||  ||    
T  25491207 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25491306  T
Q  276 agaggatacttt 287  Q
    ||||| ||||||    
T  25491307 agaggttacttt 25491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 44372705 - 44372800
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcg 271  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  44372705 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcg 44372800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 44388616 - 44388711
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcg 271  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  44388616 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcg 44388711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 35303737 - 35303862
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||| | ||||||||  | |||||| |||||||| |||||| |||| |  ||| |||| ||||||||||||||||||||| ||    
T  35303737 tgtcataccccaaattttgactatttttctctgattttaccccttttattcttattttaaaagccaagaaatttcgtcgtttcagacgaaatttcggcag 35303836  T
Q  276 agaggatactttgaagtaactcattt 301  Q
    ||||| || ||||||||| |||||||    
T  35303837 agaggttaatttgaagtacctcattt 35303862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 176 - 280
Target Start/End: Complemental strand, 27606709 - 27606606
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||| |||||||||||| ||||||||||||| ||| | |||||||||||| |||||||| ||||||||||  |||| |||||||||||||||| ||    
T  27606709 tgtcatactccaaattttgactacttttctctatttttatcaattttattcgtacttttaaagacgggaatttt-gtcgtctcagacgaaatttcggcag 27606611  T
Q  276 agagg 280  Q
    |||||    
T  27606610 agagg 27606606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 24285696 - 24285798
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||   || ||||| | |||||| |||||||||||||||||    
T  24285696 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaactggaaatttccgtcgtttaagacgaaatttcggtag 24285795  T
Q  276 aga 278  Q
    |||    
T  24285796 aga 24285798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 42249520 - 42249418
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||| ||||||| |||  ||| | | |||||| |||||||||||||| ||    
T  42249520 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaatcgaaaatgtccgtcgttttagacgaaatttcggcag 42249421  T
Q  276 aga 278  Q
    |||    
T  42249420 aga 42249418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 26903396 - 26903296
Alignment:
Q  178 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagag 277  Q
    |||||||| |||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||  ||| | |||||||| |||||||||||||| ||||    
T  26903396 tcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccgaaaatgtccatcgttttagacgaaatttcggcagag 26903297  T
Q  278 a 278  Q
    |    
T  26903296 a 26903296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 34070669 - 34070567
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||| ||||||||| ||    
T  34070669 tgtcataccccaaattttgatcacttttctctatttttacacattttgttcgtacttttaaaaccggtaatgtccgtcgttttagacaaaatttcggcag 34070570  T
Q  276 aga 278  Q
    |||    
T  34070569 aga 34070567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 278
Target Start/End: Original strand, 24292371 - 24292475
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcg-ggaattttcatcgtttcagacgaaatttcggt 273  Q
    ||||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||  ||   ||| | | |||||| |||||||||||||||    
T  24292371 ctgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaaccgaaaaatgtccgtcgtttaagacgaaatttcggt 24292470  T
Q  274 agaga 278  Q
    |||||    
T  24292471 agaga 24292475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 39730178 - 39730111
Alignment:
Q  8 gctggtcaaggcatttgtcacactca-gtcatcatgtgattgtaccttactatgagattgaagcaatt 74  Q
    ||||||||||| ||||| |||||||| |||||| ||||||||||| ||||||||||||||| ||||||    
T  39730178 gctggtcaaggtatttgccacactcaagtcatcgtgtgattgtacattactatgagattgatgcaatt 39730111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 18989389 - 18989312
Alignment:
Q  225 tcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 302  Q
    |||| ||||||||| ||||||||||  |||  |||||||||||| ||||||||||| |||||| ||||| ||||||||    
T  18989389 tcgtctttttaaagccgggaatttttgtcgcatcagacgaaattacggtagagaggttactttcaagtacctcatttt 18989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 22389179 - 22389264
Alignment:
Q  7 ggctggtcaaggcatttgtcacactcagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaagg 92  Q
    |||||||||||| ||||| ||||| ||||| |||||||| |||||||| |||||| ||||||| |||| |||| | || |||||||    
T  22389179 ggctggtcaaggtatttgccacacccagtcgtcatgtgactgtaccttgctatgaaattgaagtaattataaacaaacattcaagg 22389264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 21322875 - 21322814
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 237  Q
    |||||||||||||||||||||||||||| ||||||  ||||  ||||||||||||||||||||    
T  21322875 tgtcataccccaaattttgaccactttt-tctatttgtaccaaattttattcgtatttttaaa 21322814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 20917520 - 20917570
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattc 226  Q
    |||||||| | |||||||||||||||||||||||| |||  ||||||||||    
T  20917520 tgtcatactctaaattttgaccacttttctctatttttattcattttattc 20917570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 27683434 - 27683381
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  27683434 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 27683381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 3432956 - 3432823
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  3432956 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 3432857  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
     ||||| |||||||||||| ||||||||||||||    
T  3432856 aagaggttactttgaagtacctcattttttattc 3432823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 31548522 - 31548655
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  31548522 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 31548621  T
Q  275 gagaggatactttgaagtaactcattttttattc 308  Q
      |||| |||||||||||| ||||||||| ||||    
T  31548622 aggaggttactttgaagtacctcatttttgattc 31548655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 31539954 - 31540086
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  31539954 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31540053  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
     |||| |||||||||||| ||||||||| ||||    
T  31540054 ggaggttactttgaagtacctcatttttgattc 31540086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 176 - 355
Target Start/End: Complemental strand, 32137819 - 32137640
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |     
T  32137819 tgtcttaccccaaattttgatcacttttctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 32137720  T
Q  276 agaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    | | | |||||||||||| |||||||||||||| |||  |||| || ||| ||||| ||||||| |||||||||||||||    
T  32137719 ataagttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctctttatttcagtattt 32137640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 35104129 - 35103997
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| || |     
T  35104129 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagttgggaattttcgtcgtttcagacgaaattttggcaa 35104030  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
     |||| |||||||||||| ||||||||| ||||    
T  35104029 ggaggttactttgaagtacctcatttttgattc 35103997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 347
Target Start/End: Complemental strand, 41746758 - 41746586
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg-ta 274  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||  |    
T  41746758 tgtcatatcccaaattttgaccacttttatctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcaa 41746659  T
Q  275 gagaggatactttgaagtaactcattttttattcggagctgggctctgttccctcttcattttctttttattt 347  Q
     ||||| |||||||||||| |||||||||||||| |||  |||| || ||| ||||| |||||||||||||||    
T  41746658 aagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctttttattt 41746586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 29221554 - 29221429
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    |||||||||||||||||| |    
T  29221554 ctgtcataccccaaattttgactacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgctatttcagacgaaatttcggca 29221455  T
Q  275 gagaggatactttgaagtaactcattt 301  Q
    |||||| || |||||| || |||||||    
T  29221454 gagagg-tattttgaaatacctcattt 29221429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 44320257 - 44320132
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| || | || |||   || ||||||||||||||||||| | ||    
T  44320257 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgtcgtttcagacgaaatttcagcag 44320158  T
Q  276 agaggatactttgaagtaactcattt 301  Q
     |||| |||||  ||||| |||||||    
T  44320157 ggaggttacttgaaagtacctcattt 44320132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 21498963 - 21498861
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||| |||||||  ||| ||| | | |||||| |||||||||||||| ||    
T  21498963 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggcag 21498864  T
Q  276 aga 278  Q
    |||    
T  21498863 aga 21498861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 23223220 - 23223131
Alignment:
Q  13 tcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggcctatatca 101  Q
    |||||||||||| ||||||| | || ||||||||||||||||| |||||||||| |||||||||||||||||| |||||||  |||||||    
T  23223220 tcaaggcatttgccacactccaatcgtcatgtgattgtaccttgctatgagattaaagcaattctaaatagacattcaaggtatatatca 23223131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 51058450 - 51058359
Alignment:
Q  178 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 270  Q
    |||||||||||||||||| ||||||||| | |||| |  ||||||||||||||||||||||  |||||||||| | |||||| ||||||||||    
T  51058450 tcataccccaaattttgatcacttttctttgttct-attcattttattcgtatttttaaagctgggaattttcgttgtttcaaacgaaatttc 51058359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 28457556 - 28457673
Alignment:
Q  178 tcataccccaaattttgaccacttttctc-tattcttacccatttta-ttcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||||| | || |||||||||||| || ||||||| || | |  |||   || ||||||||||||||||||||  ||    
T  28457556 tcataccccaaattttgaccacttttctcgtttttttacccattttattttgtattttaaacgccaagaaggatcgtcgtttcagacgaaatttcgacag 28457655  T
Q  276 agaggatactttgaagta 293  Q
    ||||| ||||||||||||    
T  28457656 agaggttactttgaagta 28457673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 8241487 - 8241438
Alignment:
Q  252 tcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 301  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  8241487 tcgtttcagacgaaatttcggtagagaggttactttaaagtacctcattt 8241438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 8579341 - 8579413
Alignment:
Q  227 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    ||||||| ||||||| |  |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  8579341 gtattttaaaagtcgcgttttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 8579413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 13450142 - 13450202
Alignment:
Q  295 ctcattttttattcggagctgggctctgttccctcttcattttctttttatttcagtattt 355  Q
    ||||||||| |||| |||  ||||||| ||| ||||| |||||||||||||||||||||||    
T  13450142 ctcatttttgattccgagtcgggctctcttctctctttattttctttttatttcagtattt 13450202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 20314092 - 20314058
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctatt 210  Q
    |||||||||||||||||||||||||||| ||||||    
T  20314092 tgtcataccccaaattttgaccacttttttctatt 20314058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 31313097 - 31313019
Alignment:
Q  16 aggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagaccttcaaggc 93  Q
    ||||||||| ||||||| | || | |||| |||||||||| |||||||||| || |||||||||||||||  |||||||    
T  31313097 aggcatttgccacactccaatcgtgatgttattgtaccttgctatgagattaaaccaattctaaatagacaatcaaggc 31313019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 12465751 - 12465698
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  12465751 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 12465698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 52100017 - 52100078
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 237  Q
    ||||||| || |||||||||||| |||||||| || |||| |||||| |||||| |||||||    
T  52100017 tgtcatatcctaaattttgaccatttttctctgtttttacacattttgttcgtacttttaaa 52100078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 14397342 - 14397286
Alignment:
Q  9 ctggtcaaggcatttgtcacact-cagtcatcatgtgattgtaccttactatgagat 64  Q
    |||||||||| ||||| |||||| | ||| ||||||||||||||||| |||||||||    
T  14397342 ctggtcaaggtatttgccacactaccgtcgtcatgtgattgtaccttgctatgagat 14397286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 149 - 17
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  149 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 50  T
Q  276 agaggatactttgaagtaactcattttttattc 308  Q
    ||||| |||||||||||| ||||||||||||||    
T  49 agaggttactttgaagtacctcattttttattc 17  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 40898 - 40807
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaat 267  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  40898 tgtcataccccaaattttgaccacttttctctattcttatccattttattcgtatttttaaagtcgagcattttcatcgtttcagacgaaat 40807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 7255 - 7129
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||| ||| |||||||| || |||||||| | ||||||||||||||||||| ||    
T  7255 tgtcataccctaaattttgaccacttttctctgtttttacccattttatttgtacttttaaagccgagaattttcgttgtttcagacgaaatttcgggag 7156  T
Q  276 agaggatactttgaagtaactcatttt 302  Q
      ||| |||||||||||| ||||||||    
T  7155 gaaggttactttgaagtacctcatttt 7129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 139 - 264
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | | ||||||| |  |||||||||||||||||        
T  139 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 238  T
Q  276 agaggatactttgaagtaactcattt 301  Q
    ||||  |||||||||||| |||||||    
T  239 agagtttactttgaagtacctcattt 264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 20547 - 20422
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 275  Q
    |||||||||||||||||||||||||||||| |  | |||| |||||| |||||| |||||||| || |||||||| | ||||||||||||||||||| ||    
T  20547 tgtcataccccaaattttgaccacttttctatggttttacacattttgttcgtacttttaaagccgagaattttcgttgtttcagacgaaatttcggcag 20448  T
Q  276 agaggatactttgaagtaactcattt 301  Q
    ||||| ||||||| |||| |||||||    
T  20447 agaggttactttggagtacctcattt 20422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 278
Target Start/End: Complemental strand, 438 - 335
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||||| |    
T  438 ctgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaatttcggca 339  T
Q  275 gaga 278  Q
    ||||    
T  338 gaga 335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 438 - 345
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaattt 269  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||    
T  438 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaattt 345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 7694 - 7622
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattt 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||| |||||||    
T  7694 tgtcataccccaaattttgaccacttttctctattcttacccatttttttgcattttttaaagtcaggaattt 7622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 192526 - 192622
Alignment:
Q  174 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 270  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||| |||||| |||||||  ||| ||| | | |||||| ||||||||||||    
T  192526 gctgtcataccccaaattttgaccacttttctctatttttacagattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 192622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 278
Target Start/End: Complemental strand, 65604 - 65501
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||||||||||||  |||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||||||||||||| |    
T  65604 ctgtcataccccaaattttgtacacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggca 65505  T
Q  275 gaga 278  Q
    ||||    
T  65504 gaga 65501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 278
Target Start/End: Complemental strand, 81852 - 81749
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| ||||||||||| || |    
T  81852 ctgtcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaattttggca 81753  T
Q  275 gaga 278  Q
    ||||    
T  81752 gaga 81749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 278
Target Start/End: Original strand, 415 - 518
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 274  Q
    ||||||||||| ||||||||||||||||||| || | |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||||||||||||| |    
T  415 ctgtcataccctaaattttgaccacttttctttaattttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggca 514  T
Q  275 gaga 278  Q
    ||||    
T  515 gaga 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 15837 - 15760
Alignment:
Q  225 tcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 302  Q
    |||| ||||||||| | ||||||||| ||| ||||||||||||| ||||||| ||| |||||||||||| ||||||||    
T  15837 tcgtctttttaaagccaggaattttcgtcgcttcagacgaaattacggtagataggttactttgaagtacctcatttt 15760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 801 - 762
Alignment:
Q  183 ccccaaattttgaccacttttctctattcttacccatttt 222  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  801 ccccaaattttgaccacttttctctattcttacccatttt 762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 10974 - 10912
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 237  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  10974 ctgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 10912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 10651 - 10595
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 302  Q
    ||||| ||| ||||||||||||||||| | ||||| |||||||||||| ||||||||    
T  10651 ttttcgtcgcttcagacgaaatttcggcaaagaggttactttgaagtacctcatttt 10595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 355
Target Start/End: Complemental strand, 65701 - 65589
Alignment:
Q  244 aattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactca-ttttttattcggagctgggctctgttccctcttcattttctttt 342  Q
    ||||||| | ||||| ||||||||||||  | ||| | |||||||||||| |||| |||||||||| |||  || | || ||| ||||| ||||| ||||    
T  65701 aattttcgttgtttcggacgaaatttcgacaaagatgttactttgaagtacctcatttttttattccgagtcggacccttttctctctttattttatttt 65602  T
Q  343 tatttcagtattt 355  Q
    |||||||||||||    
T  65601 tatttcagtattt 65589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 65744 - 65710
Alignment:
Q  175 ctgtcataccccaaattttgaccacttttctctat 209  Q
    ||||||||||| |||||||||||||||||||||||    
T  65744 ctgtcataccctaaattttgaccacttttctctat 65710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 11507 - 11457
Alignment:
Q  176 tgtcataccccaaattttgaccacttttct-ctattcttacccattttatt 225  Q
    |||| |||||||||||||||||| |||| | ||||||||||||||||||||    
T  11507 tgtcgtaccccaaattttgaccattttttttctattcttacccattttatt 11457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 6109 - 6056
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  6109 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 6056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 59736 - 59789
Alignment:
Q  246 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 299  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  59736 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 59789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 302
Target Start/End: Original strand, 61288 - 61418
Alignment:
Q  176 tgtcataccccaaattttgaccacttttctcta-ttcttaccca-ttttattcgta---tttttaaagtcgggaattttcatcgtttcagacgaaatttc 270  Q
    |||||||||||||||||||||||| |||||||| || |||| || |||||||||||   ||||| ||| |   |||||||||  ||||| || |||||||    
T  61288 tgtcataccccaaattttgaccac-tttctctattttttactcatttttattcgtatttttttttaagccaaaaattttcattatttcaaacaaaatttc 61386  T
Q  271 ggtagagaggatactttgaagtaactcatttt 302  Q
     | | ||||| |||||||||||| ||||||||    
T  61387 agcatagaggttactttgaagtacctcatttt 61418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University