View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_113 (Length: 357)
Name: NF10829A_low_113
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_113 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 351
Target Start/End: Complemental strand, 29796862 - 29796527
Alignment:
| Q |
12 |
ggacatcatcatggcatgctaaccaaatgagaaattttggcatttcaagcttcctttatagccttatttgtgtaccattttcaaaattagaatttagctt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29796862 |
ggacatcatcatggcatgctaaccaaatgagaaattttggcatttcaagcttcatttatagccttatttgtgtaccattttcaaaattagaatttagctt |
29796763 |
T |
|
| Q |
112 |
cgtttgtgtaggttccattaacattttccagccaaatgacaacatcactgactttagatttcaaatattgttgcataccattttgctcatcttttatagg |
211 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29796762 |
catttgtgtaggctccattaacattttccagccaaatgacaacatcagtgactttagaattcaaatatagttgcataccattttgctcatcttttatagc |
29796663 |
T |
|
| Q |
212 |
attagatgaaaaattgggagcaaggactgcagagtgagcacattatcttcaatcaaatctttgaccgtgaagttcaacatcatggatgaaaacaatggaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||| |
|
|
| T |
29796662 |
attagatgaaaaattgggagcaaggactgcagagagagcacattatcttcaatcaaatctttgaccatgaacttcaacatc----atgtcaacaatggaa |
29796567 |
T |
|
| Q |
312 |
cttggcaactaagagggataaactttatccaatcattata |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29796566 |
cttggcaactaagagggataaactttatccaatcattata |
29796527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 219 - 351
Target Start/End: Original strand, 34082382 - 34082515
Alignment:
| Q |
219 |
gaaaaattgggagcaaggactgcagagtgagcacattatcttcaatcaaatctttgaccgtgaagttcaacatcatggatgaaaaca-atggaacttggc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||| |||| |||||||||||| |
|
|
| T |
34082382 |
gaaaaattgggagcaaggactgcagagtgagcacattatcttcaatcaaatccttgaccgtaaactttaacatcatggatgtcaacatatggaacttggc |
34082481 |
T |
|
| Q |
318 |
aactaagagggataaactttatccaatcattata |
351 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||| |
|
|
| T |
34082482 |
aacaaagagggataaactttatctaatcattata |
34082515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 34082280 - 34082360
Alignment:
| Q |
70 |
tagccttatttgtgtaccattttcaaaattagaatttagcttcgtttgtgtagg-ttccattaacattttccagccaaatg |
149 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||| |||||||||| || |||||||||||| |||||||||| |
|
|
| T |
34082280 |
tagctttatttgtgtaccattttcaagattagaatttagcttcatttgtgtaggttttcattaacatttttcagccaaatg |
34082360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 34082248 - 34082277
Alignment:
| Q |
15 |
catcatcatggcatgctaaccaaatgagaa |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34082248 |
catcatcatggcatgctaaccaaatgagaa |
34082277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 28968332 - 28968249
Alignment:
| Q |
212 |
attagatgaaaaattgggagcaaggactgcagagtgagcacattatcttcaatcaaatctttgaccgtgaagttcaacatcatggatg |
299 |
Q |
| |
|
|||||| ||||||||||||||||||| | || |||||| ||||| |||||||||||| ||||| | || |||||||||||||||| |
|
|
| T |
28968332 |
attagaggaaaaattgggagcaaggaaag--gattgagcatattattttcaatcaaatccttgac--ttaacttcaacatcatggatg |
28968249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University