View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_119 (Length: 348)
Name: NF10829A_low_119
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_119 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 45282306 - 45282648
Alignment:
| Q |
1 |
agacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctac |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45282306 |
agacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctccttg |
45282405 |
T |
|
| Q |
101 |
gtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatg |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282406 |
gtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatg |
45282505 |
T |
|
| Q |
201 |
gataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282506 |
gataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaa |
45282605 |
T |
|
| Q |
301 |
tgaattttgagagtgatgccactttttctcatatactgtttct |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45282606 |
tgaattttgagagtgatgccactttttctcatatactctttct |
45282648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 45274063 - 45274405
Alignment:
| Q |
1 |
agacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274063 |
agacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctac |
45274162 |
T |
|
| Q |
101 |
gtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatg |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
45274163 |
gtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgcatg |
45274262 |
T |
|
| Q |
201 |
gataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| | | ||||||||||| |||||||||||||||||||| |
|
|
| T |
45274263 |
gataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaaaaa |
45274362 |
T |
|
| Q |
301 |
tgaattttgagagtgatgccactttttctcatatactgtttct |
343 |
Q |
| |
|
| ||||||||||||||||| ||||||||| ||||||| ||||| |
|
|
| T |
45274363 |
taaattttgagagtgatgctactttttcttatatactctttct |
45274405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 45293653 - 45293904
Alignment:
| Q |
8 |
acaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttcta |
107 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45293653 |
acaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttcta |
45293752 |
T |
|
| Q |
108 |
aatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatc |
207 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
|
|
| T |
45293753 |
aatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatc |
45293852 |
T |
|
| Q |
208 |
aattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
256 |
Q |
| |
|
||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
|
|
| T |
45293853 |
aattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 45302613 - 45302864
Alignment:
| Q |
8 |
acaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttcta |
107 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45302613 |
acaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttcta |
45302712 |
T |
|
| Q |
108 |
aatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatc |
207 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
|
|
| T |
45302713 |
aatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatc |
45302812 |
T |
|
| Q |
208 |
aattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
256 |
Q |
| |
|
||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
|
|
| T |
45302813 |
aattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 12 - 337
Target Start/End: Original strand, 45270547 - 45270870
Alignment:
| Q |
12 |
ttgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatg |
111 |
Q |
| |
|
||||||||| | ||||||||| ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45270547 |
ttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatg |
45270646 |
T |
|
| Q |
112 |
ccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaatt |
211 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
45270647 |
ccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaatt |
45270746 |
T |
|
| Q |
212 |
aattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagtt-atgttttcttcaaaaatgaattttga |
310 |
Q |
| |
|
||||||||| ||| || ||| |||||||||| | ||| | | | ||| |||||||||||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
45270747 |
aattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttga |
45270843 |
T |
|
| Q |
311 |
gagtgatgccactttttctcatatact |
337 |
Q |
| |
|
||||||||| ||| |||| ||| |||| |
|
|
| T |
45270844 |
gagtgatgctactatttcacatctact |
45270870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 45293957 - 45294022
Alignment:
| Q |
267 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat |
332 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcat |
45294022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 45302917 - 45302982
Alignment:
| Q |
267 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat |
332 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcat |
45302982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University