View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_123 (Length: 341)
Name: NF10829A_low_123
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_123 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 6236229 - 6236557
Alignment:
| Q |
9 |
gaaatgaagaagaaataacacaaaaggtaaacacatccatatctacagggctcactgcatatagtagtagtactagttctttgacatgatgtttgttcac |
108 |
Q |
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| T |
6236229 |
gaaatgaacaagaaataacacaaaaggtaaacacatccatatctacagggctcactgcatatagtagtagtactagttctttgacatgatgtttgttcac |
6236328 |
T |
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| Q |
109 |
cggtcaaggcaataatatcatggtgtttctaaattatagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgcttta |
208 |
Q |
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| T |
6236329 |
tggtcaaggcaata-tatcatggtgtttctaaattttagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgcttta |
6236427 |
T |
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| Q |
209 |
gttaatagaaattgaaaacctaggtgataggtgaaaatctaannnnnnnnnnnnnnngatcaagcgaagaaattcaataaaactagagagggccagaacc |
308 |
Q |
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| T |
6236428 |
gttaatagaaattgaaaacctaggtgataggtgaaaatctaattttttttttttt---atcaagcgaagaaattcaataaaactgaagagggccagaacc |
6236524 |
T |
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| Q |
309 |
cataacaaggtctacatcaggaagaaacaaaaa |
341 |
Q |
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| T |
6236525 |
cataacaaagtctacatcaggaagaaacaaaaa |
6236557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 6240393 - 6240435
Alignment:
| Q |
10 |
aaatgaagaagaaataacacaaaaggtaaacacatccatatct |
52 |
Q |
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| T |
6240393 |
aaatgaacatgaaataacacaaaaggtaaacacatccatatct |
6240435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 33891908 - 33891807
Alignment:
| Q |
145 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
244 |
Q |
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| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33891813 |
T |
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| Q |
245 |
atctaa |
250 |
Q |
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|||||| |
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| T |
33891812 |
atctaa |
33891807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 33952340 - 33952441
Alignment:
| Q |
145 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
244 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
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| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33952435 |
T |
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| Q |
245 |
atctaa |
250 |
Q |
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|||||| |
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| T |
33952436 |
atctaa |
33952441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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