View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_132 (Length: 338)
Name: NF10829A_low_132
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_132 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 1905402 - 1905719
Alignment:
| Q |
14 |
gaagaagaagaaaaagatgattgatgatgaagg----cttgggattcattgccaaactatcttggcatggcatcttcatttttgcgttggttgtcgcata |
109 |
Q |
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| T |
1905402 |
gaagaagaagaaaaagatgattgatgatgaaggaaggcttgggattcatggccaaactatcttggcat-----cttcatttttgcgttggttgtcgcata |
1905496 |
T |
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| Q |
110 |
tcacttggtcatagctgaccccaaatatgaagccaataattagatactatgnnnnnnnggtagtaaaggtactagatggctcattcccccaatcaaagga |
209 |
Q |
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| T |
1905497 |
tcacttggtcatagctgaccccaaatatgaagccaataattagatactatgaaaaaaaggtagtaaaggtactagatggctcattcccccaatcaaagga |
1905596 |
T |
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| Q |
210 |
ttaaggatagctaaaacgcaagtaaattaatgcttgttcccggaccaatattttactacaagaattctggaaatacatgcagtacattatgatttatgct |
309 |
Q |
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| T |
1905597 |
ttaaggatagctaaaacgcaagtaaattaatgcttgttcccggaccaatattttactacaagaattctggaaatacatgcagtacattatgatttatgct |
1905696 |
T |
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| Q |
310 |
taatttgtcttctgtgaagcata |
332 |
Q |
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| T |
1905697 |
taatttgtcttctgtgaagcata |
1905719 |
T |
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