View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_133 (Length: 338)
Name: NF10829A_low_133
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_133 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 26017327 - 26017009
Alignment:
| Q |
19 |
gcctgtaccaatcacaaacaaaaatcttagactatatattggtccttgcacatgcatccattttgtaaatcccattaaccataaattcaataagaccttt |
118 |
Q |
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| T |
26017327 |
gcctgtaccaatcacaaacaaaaatcttagactatatattggtccttacacatgtatccattttgtaaatcccattaaccataaatttaataagaccttt |
26017228 |
T |
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| Q |
119 |
ccaaatttgtttaataaatctatatagtatnnnnnnnnnnnnnn---gatgaacaaatccatgcaacccatgaagttacctgtttagattgtccatgaag |
215 |
Q |
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| T |
26017227 |
ccaaatttgtttaataaatctatatagtataaaaaaaaaaaaaaaaagatgaacaaatccatgcaacccatgaagttacctgtttagattgtccatgaag |
26017128 |
T |
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| Q |
216 |
atcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacatccttcgct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017127 |
atcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacatccttcgct |
26017028 |
T |
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| Q |
316 |
gccgacggagatggtactg |
334 |
Q |
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|||||| |||||||||||| |
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| T |
26017027 |
gccgaccgagatggtactg |
26017009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 186 - 314
Target Start/End: Complemental strand, 26002114 - 26001986
Alignment:
| Q |
186 |
tgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaaccca |
285 |
Q |
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||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||| || || | |||| ||||||||||||||||||| ||| |
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| T |
26002114 |
tgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttcttacaatacacagaaaatcca |
26002015 |
T |
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| Q |
286 |
tctccttctacctcaacaacatccttcgc |
314 |
Q |
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| T |
26002014 |
tctccctccacctcaacaacatccttcgc |
26001986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 314
Target Start/End: Complemental strand, 30373307 - 30373225
Alignment:
| Q |
232 |
taacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacatccttcgc |
314 |
Q |
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|||||||| ||||||| || ||| || |||||||||||||| |||||| |||||||||| || |||||||||||||| |||| |
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| T |
30373307 |
taacgatcttccatatactccctcctccctctcttacaataaacagaatacccatctccctccgcctcaacaacatccctcgc |
30373225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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