View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_134 (Length: 337)
Name: NF10829A_low_134
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_134 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 3 - 322
Target Start/End: Complemental strand, 7898042 - 7897722
Alignment:
| Q |
3 |
caaaggttccggaacacaacctccacctccccactcaaaccaccctctactagccgcaaacgttgcaaaatgctgtagcaagacttcacggaaaagctta |
102 |
Q |
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| T |
7898042 |
caaaggttctggaacaccacctccacctccccactcaaaccaccctctactagccgcaaacattgcaaaatgctgtagcaagacttcacggaaaagattc |
7897943 |
T |
|
| Q |
103 |
cccactcttccggtttccaccaccaacaatcgtccccttcccgcaactccaccccttccaaccttnnnnnnnggctttgtaaaagctctttttcccaagc |
202 |
Q |
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| T |
7897942 |
ccccctcttccggtttccaccaccaacaatcgtccccttcccgcaactccaccccttccaaccttagaaaaaggctttgtaaaagctccttttcccaagc |
7897843 |
T |
|
| Q |
203 |
aaacaactccctacgcaaaggcatcattaaaccacacctcccccaccttcaaatcttgacccctagaaaccnnnnnnngtcttgaaaatagat-tttaag |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |
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| T |
7897842 |
aaacaactccctacgcaaaggcatcattaaaccacacctcccccaccttcaaatcttgaccactagaaaccaaaaaaagtcttgaaaatagatctttaag |
7897743 |
T |
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| Q |
302 |
aggctcgttttccaaccacgc |
322 |
Q |
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||||||||||||||||||||| |
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| T |
7897742 |
aggctcgttttccaaccacgc |
7897722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 27895593 - 27895779
Alignment:
| Q |
15 |
aacacaacctccacctccccactcaaaccaccctctactagccgcaaacgttgcaaaatgctgtagcaagacttcacggaaaagcttacccactcttccg |
114 |
Q |
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||||| |||||| ||| ||||||||||| ||||||||||||| |||| ||| || || |||||||||| ||||||||||| ||| ||| ||| |
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| T |
27895593 |
aacaccacctcctcctatccactcaaacccccctctactagccacaaatcttgtaagattttgtagcaagatttcacggaaaaaagacccccctcctcct |
27895692 |
T |
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| Q |
115 |
gtttccaccaccaacaatcgtccccttcccgcaactccaccccttccaaccttnnnnnnnggctttgtaaaagctctttttcccaagcaaacaactc |
211 |
Q |
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| T |
27895693 |
gcttccaccaccaacaatcatcc----------actccaccccttccaaccttaaaaaaaggctttgtaaaagctcattttccaaagcaaacaactc |
27895779 |
T |
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