View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_141 (Length: 333)
Name: NF10829A_low_141
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_141 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 51184241 - 51184552
Alignment:
| Q |
18 |
aaatacactcactttttcatagaaggctatgacacgatcaaggtcgcctactcgaagcatcactttgcataagggttcacgggtaggtcttctctccaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51184241 |
aaatacactcactttttcatagaaggctatgacacgatcaaggtcgcctactcgaagcatcactttgcataagggttcacgggtaggtcttctctccaaa |
51184340 |
T |
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| Q |
118 |
agctcaaacctataaccactaggatcttcaacggaagcagttactatagagccacctttgacagaccctggttctcttgtaacctttccccctttcgcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51184341 |
agctcaaacctataaccactaggatcttcaacggaagcagttactatagagccacctttgacagaccctggttctcttgtaacctttccccctttcgcct |
51184440 |
T |
|
| Q |
218 |
ttacaatatccactgtcttggaaacctgcaaagtcgcagtataaaaccaaactagtcttaattgtctaatcttttctttcatacaaatcaatagctactg |
317 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
51184441 |
ttacaatatctactgtcttggaaacctgcaaagtcacagtataaaaccaaactagtcttaattgtctaatcttttctttcataaaaatcaatatctactg |
51184540 |
T |
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| Q |
318 |
tctgtgcttctc |
329 |
Q |
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||| || ||||| |
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| T |
51184541 |
tctttgattctc |
51184552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 14172870 - 14172579
Alignment:
| Q |
18 |
aaatacactcactttttcatagaaggctatgacacgatcaaggtcgcctactcgaagcatcactttgcataagggttcacgggtaggtcttctctccaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
14172870 |
aaatacactcactttttcatagaaggctatgacacgatcaaggtcacctactcgaagcatcactttgcataagggttcacgagtagttcttctctccaaa |
14172771 |
T |
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| Q |
118 |
agctcaaacctataaccactaggatcttcaacggaagcagttactatagagccacctttgacagaccctggttctcttgtaacctttccccctttcgcct |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14172770 |
agcttaaacctataaccactaggatcttcaacggaagcagttactatagagccacctatgacagaccctggttctcttgtaacctttccccctttcgcct |
14172671 |
T |
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| Q |
218 |
ttacaatatccactgtcttggaaacctgcaaagtcgcagtataaaaccaaactagtcttaattgtctaatcttttctttcatacaaatcaat |
309 |
Q |
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| T |
14172670 |
ttacaatatctactgtcttggaaacctgcaaaatcgcagtataaaaccaaaatagtcttaattgtttagtctttcctttcatacagatcaat |
14172579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 48011035 - 48010932
Alignment:
| Q |
18 |
aaatacactcactttttcatagaaggctatgacacgatcaaggtcgcctactcgaagcatcactttgcataagggttcacgggtaggtcttctctccaaa |
117 |
Q |
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||||| |||||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||| || | |||||||| | ||||| |
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| T |
48011035 |
aaataaactcacttattcatagaaggctacgacacgatcaaggccgcctacttgaagcatcactttgcataggggttcgcgagcaggtcttcaccccaaa |
48010936 |
T |
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| Q |
118 |
agct |
121 |
Q |
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|||| |
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| T |
48010935 |
agct |
48010932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 1050 - 807
Alignment:
| Q |
18 |
aaatacactcactttttcatagaaggctatgacacgatcaaggtcgcctactcgaagcatcactttgcataagggttcacgggtaggtcttctctccaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| | || || |||||||||||||||||||||||||||| ||| |||||||| ||||| |
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| T |
1050 |
aaatacactcactttttcatagaaggctatgacacaatcaaggttgtctgcttgaagcatcactttgcataagggttcacgagtaagtcttctccccaaa |
951 |
T |
|
| Q |
118 |
agctcaaacctataaccactaggatcttcaacggaagcagttactatagagccacctttgacagaccctggttctcttgtaacctttccccctttcgcct |
217 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||| |||| ||| |||| |||| | | ||||||| |||||||||||| ||| ||| |
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| T |
950 |
agctcaaacctatcaccactaggatcttcaataaaagcagttactgtagaaccatctttaacaggctccagttctctcataacctttccccatttttcct |
851 |
T |
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| Q |
218 |
ttacaatatccactgtcttggaaacctgcaaagtcgcagtataa |
261 |
Q |
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||||||||| || ||||||| |||||| ||| || |||||||| |
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| T |
850 |
ttacaatatttaccgtcttggcaacctgaaaaatcacagtataa |
807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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