View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_143 (Length: 330)
Name: NF10829A_low_143
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_143 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 8075032 - 8075349
Alignment:
| Q |
13 |
agataaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttgtcgtctatcttcacaattgcgaagatttta |
112 |
Q |
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| T |
8075032 |
agataaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttgtcgtctatcttcacaattgcgaagatttta |
8075131 |
T |
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| Q |
113 |
ttgtgcgccaccaaacgcatgacactatgaacacaaccggcttttgcttctggaattcgaagagccgagacaagctcaggaagaatgataggtttgccat |
212 |
Q |
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| T |
8075132 |
ttgtgcgccaataaacgcatgacactgtgaacacaaccggcttttgcttctggaattcgaagagccgagacaagctcgggaagagtaataggtttgccat |
8075231 |
T |
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| Q |
213 |
gattttggattatatctggtatgccaagttcaacagcccacttgatcgacacgggtctcaagaaactcaataactgattgtacaagtgagcttgaacttc |
312 |
Q |
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| T |
8075232 |
gattttgaattatatctggtatgccaagttcaacagcccacttgatcgacacgggtctcaagaaactaaataactgattgtacaagtgagcttgaacttc |
8075331 |
T |
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| Q |
313 |
aaagagttcacttgcttt |
330 |
Q |
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| T |
8075332 |
aaagagttcacttgcttt |
8075349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 8066600 - 8066914
Alignment:
| Q |
16 |
taaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttgtcgtctatcttcacaattgcgaagattttattg |
115 |
Q |
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| T |
8066600 |
taaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttgtcgtctatcttcacaattgcgaagattttattg |
8066699 |
T |
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| Q |
116 |
tgcgccaccaaacgcatgacactatgaacacaaccggcttttgcttctggaattcgaagagccgagacaagctcaggaagaatgataggtttgccatgat |
215 |
Q |
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| T |
8066700 |
tgcgccaataaacgcatgacactatgaacacaaccggcttttgcttctggaattcgaagagccgagacaagctcaggaagagtgataggtttgccatgat |
8066799 |
T |
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| Q |
216 |
tttggattatatctggtatgccaagttcaacagcccacttgatcgacacgggtctcaagaaactcaataactgattgtacaagtgagcttgaacttcaaa |
315 |
Q |
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| T |
8066800 |
tttggattatatctggtatgccaagttcaacagcccacttgatcgacacgggtctcatgaaactgaatatctgattgtacaggtgagcttgagctacaaa |
8066899 |
T |
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| Q |
316 |
gagttcacttgcttt |
330 |
Q |
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| T |
8066900 |
gagctcacttgcttt |
8066914 |
T |
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