View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_16 (Length: 523)
Name: NF10829A_low_16
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_16 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 367 - 523
Target Start/End: Original strand, 13854693 - 13854849
Alignment:
| Q |
367 |
tatgcctttgttttatttctgtataatatctttaggctaatgtattattctttgaaaggatagcataacttcatagaccaatgctgacttgatttatgga |
466 |
Q |
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| T |
13854693 |
tatgcctttgttttatttctgtataatatctttaggctaatgtattagtctttgaaatgatagcataacttcatagaccaatgctgacttgatttatgga |
13854792 |
T |
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| Q |
467 |
tgacaatgatttgttatttgataatcagtaacgttccggagatagtagtttttgcaa |
523 |
Q |
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| T |
13854793 |
tgacaatgatttgttatttgataatcagtaacgttccggagatagtagtttttgcaa |
13854849 |
T |
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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 429 - 523
Target Start/End: Complemental strand, 10215764 - 10215670
Alignment:
| Q |
429 |
gcataacttcatagaccaatgctgacttgatttatggatgacaatgatttgttatttgataatcagtaacgttccggagatagtagtttttgcaa |
523 |
Q |
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| T |
10215764 |
gcataacttcatagacctatgttgacttgatttattgataataatgattagttatatgataatcagtaacattctggagatagtggtttctgcaa |
10215670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 469
Target Start/End: Original strand, 10107690 - 10107785
Alignment:
| Q |
373 |
tttgttttatttctgtataatatctttaggctaatgtattattctttgaaaggatagcataacttcatagaccaatgctgacttgatttatggatga |
469 |
Q |
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| T |
10107690 |
tttgtttcatttccgtataatttgtttatgctaatgtattagtctt-gagatgattgcataatttcatagaccattgttgacttgatttatagatga |
10107785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 469
Target Start/End: Original strand, 10104234 - 10104305
Alignment:
| Q |
397 |
tttaggctaatgtattattctttgaaaggatagcataacttcatagaccaatgctgacttgatttatggatga |
469 |
Q |
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| T |
10104234 |
tttatgctaatgtattagtctt-gagatgattgcataatttcatagaccattgttgacttgatttatagatga |
10104305 |
T |
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