View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_162 (Length: 319)
Name: NF10829A_low_162
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_162 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 28092716 - 28092417
Alignment:
| Q |
11 |
tgatatgaaaacacattaactaaatggaattggatggtgcaattgaactttattgatgtttcctaatagccagaaaacaacataagtctctactttacca |
110 |
Q |
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| T |
28092716 |
tgataagaaaacacattaactaaatggaattggatggtgcaattgaactttattgatgtttcctaatagccagaaaacaacataagtctctactttacca |
28092617 |
T |
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| Q |
111 |
taagtctttgtgaattattgaggcacaatttcctttatactttccatgctatttcctgatttcactcactctatgcacaaaacacactctcataggatat |
210 |
Q |
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| T |
28092616 |
taagtctttgtgaattattgaggcacaatttccttta-actttccatgctatttcctgatttcactcactctatgtacaaaacacactctcataggatat |
28092518 |
T |
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| Q |
211 |
tatat-acaactctgttttccttaatccttaataagacataacaaaattgttagtaacaatcacaaaaacaacaacaaagaaatagagcaaaaggttctg |
309 |
Q |
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| T |
28092517 |
tatataacaactctgttttccttaatccttaataagacataacaaaattgttagtaacaatcacaaaaacaacaacaaagaaatagagcaaaaggttctg |
28092418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 234
Target Start/End: Complemental strand, 28042621 - 28042432
Alignment:
| Q |
54 |
tgaactttattgatgtttcctaatagccagaaaacaacataagtctctacttt-acca-----------taagtctttgtgaattattgaggcacaattt |
141 |
Q |
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| T |
28042621 |
tgaactttattgttgtttcctagtagctagaaatcaacatgagtctctactttaaccaaagtctggacccaagtcttcgtgaattattgaggtgcaattt |
28042522 |
T |
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| Q |
142 |
cctttatactttccatgctatttcctgatttcactcactctatgcacaaaacacactctcataggatattatat-acaactctgttttccttaa |
234 |
Q |
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| T |
28042521 |
tcttcacactttccttactatttcctgatt----tcacactatgtacaaaacacacactcataggatgttatataacagctttgttttccttaa |
28042432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 28042214 - 28042181
Alignment:
| Q |
277 |
aacaacaacaaagaaatagagcaaaaggttctga |
310 |
Q |
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| T |
28042214 |
aacaacaacaaagaaatagagcaaaaggttctga |
28042181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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