View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_167 (Length: 315)

Name: NF10829A_low_167
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_167
NF10829A_low_167
[»] chr1 (13 HSPs)
chr1 (156-259)||(16176851-16176954)
chr1 (156-259)||(4052136-4052239)
chr1 (156-251)||(7815055-7815150)
chr1 (156-251)||(34321192-34321287)
chr1 (156-259)||(31873074-31873177)
chr1 (169-259)||(30489831-30489917)
chr1 (156-259)||(46772256-46772359)
chr1 (12-42)||(3821264-3821294)
chr1 (12-42)||(4893281-4893311)
chr1 (12-42)||(20415057-20415087)
chr1 (12-42)||(29185176-29185206)
chr1 (12-42)||(31873291-31873321)
chr1 (12-42)||(35659637-35659667)
[»] chr4 (9 HSPs)
chr4 (156-258)||(51806692-51806794)
chr4 (156-260)||(24486809-24486913)
chr4 (168-264)||(44809905-44810001)
chr4 (156-255)||(9930683-9930782)
chr4 (209-259)||(14595551-14595601)
chr4 (12-42)||(22247960-22247990)
chr4 (12-42)||(52802246-52802276)
chr4 (12-42)||(53140710-53140740)
chr4 (14-42)||(29405854-29405882)
[»] chr7 (8 HSPs)
chr7 (156-259)||(7377054-7377157)
chr7 (158-259)||(16278672-16278773)
chr7 (156-259)||(48644282-48644385)
chr7 (156-259)||(36073890-36073992)
chr7 (12-42)||(17172207-17172237)
chr7 (12-42)||(40789519-40789549)
chr7 (12-42)||(44300809-44300839)
chr7 (14-42)||(7376642-7376670)
[»] chr5 (8 HSPs)
chr5 (156-259)||(5657484-5657587)
chr5 (160-259)||(42031104-42031203)
chr5 (161-264)||(10937596-10937699)
chr5 (12-42)||(19254475-19254505)
chr5 (12-42)||(34718771-34718801)
chr5 (12-42)||(41692455-41692485)
chr5 (13-42)||(16620301-16620330)
chr5 (12-40)||(38309866-38309894)
[»] chr2 (5 HSPs)
chr2 (156-259)||(40507400-40507503)
chr2 (156-260)||(40475052-40475156)
chr2 (156-247)||(4260594-4260685)
chr2 (156-259)||(39766902-39767005)
chr2 (14-42)||(4289728-4289756)
[»] chr3 (12 HSPs)
chr3 (156-259)||(26787371-26787474)
chr3 (156-259)||(28956687-28956790)
chr3 (156-259)||(9162772-9162875)
chr3 (156-259)||(33119122-33119225)
chr3 (156-259)||(2012862-2012965)
chr3 (189-259)||(1600016-1600086)
chr3 (12-42)||(33118976-33119006)
chr3 (12-42)||(41410250-41410280)
chr3 (12-42)||(42096735-42096765)
chr3 (12-42)||(45079198-45079228)
chr3 (14-42)||(2013047-2013075)
chr3 (14-42)||(30248047-30248075)
[»] chr8 (5 HSPs)
chr8 (156-259)||(15542371-15542474)
chr8 (156-259)||(15961433-15961536)
chr8 (12-42)||(20216297-20216327)
chr8 (12-42)||(20235895-20235925)
chr8 (209-259)||(37226556-37226606)
[»] scaffold0005 (1 HSPs)
scaffold0005 (209-259)||(221777-221827)
[»] chr6 (3 HSPs)
chr6 (12-42)||(6337329-6337359)
chr6 (12-42)||(24447108-24447138)
chr6 (14-42)||(1221697-1221725)
[»] scaffold0230 (1 HSPs)
scaffold0230 (14-42)||(26727-26755)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 16176954 - 16176851
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||| |||||||||||||||||||||    
T  16176954 gtgcatgctaatataaacatcaaattgatttaaatcataaatttgtagctcgtgagcttatgaaggtaaggatgaaacaattaccgtattagtttttagg 16176855  T
Q  256 ttta 259  Q
    ||||    
T  16176854 ttta 16176851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 4052239 - 4052136
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||  |||| ||||||||||||||||  |||||||||||    
T  4052239 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttgtagcttgtgagcttatgaaggtaagaatgaaacgattaccgtgatagtttttagg 4052140  T
Q  256 ttta 259  Q
    ||||    
T  4052139 ttta 4052136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 7815055 - 7815150
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttt 251  Q
    |||||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  7815055 gtgcattctaaaataaacatcaaattgatttaaattataaatttgtagctcgtgagcttatgaaggtaaggatgaaacgattaccgtattagtttt 7815150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 34321192 - 34321287
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttt 251  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||||||||||||||||||| ||||    
T  34321192 gtgcatgctaaaataaacatcaaattgatttaaatcatgaatttgtagctcgtgagcttatgaaggtaaggatgaaacgattaccgtattaatttt 34321287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 31873177 - 31873074
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||   ||| ||||||| |||||| |||||||||||||||    
T  31873177 gtgcatgttaaaataaacatcaaattgatttaaatcataaatttgtagctcgtgagcttatgatggtaatgatgaaatgattactgtattagtttttagg 31873078  T
Q  256 ttta 259  Q
    ||||    
T  31873077 ttta 31873074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 30489831 - 30489917
Alignment:
Q  169 taaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttaggttta 259  Q
    ||||||||||||||||||||||| ||||||||| |     |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  30489831 taaacatcaaattgatttaaatcgtaaatttgttgt----gagcttatgaaggtaaggatgaaacgattaccgtattagtttttaggttta 30489917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 46772359 - 46772256
Alignment:
Q  156 gtgcatgctaagataa-acatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttag 254  Q
    ||||||||||| |||| |||||||||| ||||||||||||||||| || |||| |  ||||||||  ||||||||||||| ||| ||||||| |||||||    
T  46772359 gtgcatgctaa-ataacacatcaaattaatttaaatcataaatttttatctcgtggtcttatgaaggtaaggatgaaacggttatcgtattactttttag 46772261  T
Q  255 gttta 259  Q
    |||||    
T  46772260 gttta 46772256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 3821294 - 3821264
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  3821294 acatcacaattgaaataaaactatgatccaa 3821264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 4893311 - 4893281
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  4893311 acatcacaattgaaataaaactatgatccaa 4893281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 20415057 - 20415087
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  20415057 acatcacaattgaaataaaactatgatccaa 20415087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 29185176 - 29185206
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  29185176 acatcacaattgaaataaaactatgatccaa 29185206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 31873321 - 31873291
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  31873321 acatcacaattgaaataaaactatgatccaa 31873291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 35659637 - 35659667
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  35659637 acatcacaattgaaataaaactatgatccaa 35659667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 51806794 - 51806692
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||||||    
T  51806794 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttgtagctcgtgagcttatgaaggtaaggattaaacgattaccgtattagtttttagg 51806695  T
Q  256 ttt 258  Q
    |||    
T  51806694 ttt 51806692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 24486809 - 24486913
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||||||||||||    
T  24486809 gtgcatgctaaaataaacatcaaattgatctaaatcataaatttgtagctcgtgagtttatgaaggtaaggatgaaacgattaccgtattagtttttagg 24486908  T
Q  256 tttaa 260  Q
    |||||    
T  24486909 tttaa 24486913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 44809905 - 44810001
Alignment:
Q  168 ataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttaggtttaacttt 264  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || | ||||||||||||||||| ||||    
T  44809905 ataaacatcaaattgatttaaatcataaatttgtagctcgtgagcttatgaagataaggatgaaacgatcacagaattagtttttaggtttagcttt 44810001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 9930683 - 9930782
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||  ||| |||||||| || ||||||||||||||||||    
T  9930683 gtgcatgataatataaacatcaaatggatttaaatcataaatttgtagctcgtgagcttatgaaggtaaagatgaaacaataaccgtattagtttttagg 9930782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 14595551 - 14595601
Alignment:
Q  209 gagcttatgaaaataaggatgaaacgattaccgtattagtttttaggttta 259  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  14595551 gagcttatgaaggtaaggatgaaacgattaccgtattagtttttaggttta 14595601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 22247960 - 22247990
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  22247960 acatcacaattgaaataaaactatgatccaa 22247990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 52802276 - 52802246
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  52802276 acatcacaattgaaataaaactatgatccaa 52802246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 53140710 - 53140740
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  53140710 acatcacaattgaaataaaactatgatccaa 53140740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 29405882 - 29405854
Alignment:
Q  14 atcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||    
T  29405882 atcacaattgaaataaaactatgatccaa 29405854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 7377054 - 7377157
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||  |||||||||||||    
T  7377054 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttgtagctcgtgagcttatgaaagtaaggataaaacgattaccacattagtttttagg 7377153  T
Q  256 ttta 259  Q
    ||||    
T  7377154 ttta 7377157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 16278672 - 16278773
Alignment:
Q  158 gcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttaggtt 257  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  16278672 gcatgctaaaataaacatcaaattgatttaaatcataaatttgtagctcgtaagcttataaaggtaaggatgaaacgattaccgtattagtttttaggtt 16278771  T
Q  258 ta 259  Q
    ||    
T  16278772 ta 16278773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 48644385 - 48644282
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||| |||||||||||| |    
T  48644385 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttgtagctcgtgagcttacgaaggtaaggatgaaacgattaccatattagtttttatg 48644286  T
Q  256 ttta 259  Q
    ||||    
T  48644285 ttta 48644282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 36073992 - 36073890
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||| || || ||||||||  ||||||||||||||||| || |||||||||||||    
T  36073992 gtgcatgctaaaataaaaattaaattgatttaaatcataaatttgtagcgcgtgaacttatgaaggtaaggatgaaacgatta-cgcattagtttttagg 36073894  T
Q  256 ttta 259  Q
    ||||    
T  36073893 ttta 36073890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 17172237 - 17172207
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  17172237 acatcacaattgaaataaaactatgatccaa 17172207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 40789549 - 40789519
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  40789549 acatcacaattgaaataaaactatgatccaa 40789519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 44300809 - 44300839
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  44300809 acatcacaattgaaataaaactatgatccaa 44300839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 7376642 - 7376670
Alignment:
Q  14 atcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||    
T  7376642 atcacaattgaaataaaactatgatccaa 7376670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 5657587 - 5657484
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||  | ||||||||||| |||||||||||||||||||||||||||||||||||    
T  5657587 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttttagcctgtgagcttatgaagataaggatgaaacgattaccgtattagtttttagg 5657488  T
Q  256 ttta 259  Q
    ||||    
T  5657487 ttta 5657484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 42031104 - 42031203
Alignment:
Q  160 atgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttaggttta 259  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  42031104 atgctaaaataaacatcaaattgatttaaatcataaatttgtagctcgtaagcttatgaaggtaaggatgaaatgattaccgtattagtttttaggttta 42031203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 10937596 - 10937699
Alignment:
Q  161 tgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttaggtttaa 260  Q
    |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |||||| |||||||||||| |||||     
T  10937596 tgctaaaataaacatcaaattgatttaaatcataaatttgtagcgcgtgagcttatgaagataaggatgaaacaattaccatattagtttttacgtttag 10937695  T
Q  261 cttt 264  Q
    ||||    
T  10937696 cttt 10937699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 19254505 - 19254475
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  19254505 acatcacaattgaaataaaactatgatccaa 19254475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 34718801 - 34718771
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  34718801 acatcacaattgaaataaaactatgatccaa 34718771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 41692485 - 41692455
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  41692485 acatcacaattgaaataaaactatgatccaa 41692455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 16620330 - 16620301
Alignment:
Q  13 catcacaattgaaataaaactatgatccaa 42  Q
    ||||||||||||||||||||||||||||||    
T  16620330 catcacaattgaaataaaactatgatccaa 16620301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 38309866 - 38309894
Alignment:
Q  12 acatcacaattgaaataaaactatgatcc 40  Q
    |||||||||||||||||||||||||||||    
T  38309866 acatcacaattgaaataaaactatgatcc 38309894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 40507503 - 40507400
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  |||||||  ||||||||||||||||||||||||||||||||||    
T  40507503 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttgtagctcgtgaaattatgaaggtaaggatgaaacgattaccgtattagtttttagg 40507404  T
Q  256 ttta 259  Q
    ||||    
T  40507403 ttta 40507400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 40475156 - 40475052
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  ||||||   ||||||||||||||||||||||||||||||||||    
T  40475156 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttgtagctcgtgaaattatgatggtaaggatgaaacgattaccgtattagtttttagg 40475057  T
Q  256 tttaa 260  Q
    |||||    
T  40475056 tttaa 40475052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 4260594 - 4260685
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattag 247  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  4260594 gtgcatgctaaaataaacattaaattgatttaaatcataaatttgtagttcgtgagcttatgaaagtaaggatgaaacgattaccgtattag 4260685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 39767005 - 39766902
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| | |  |   ||| |||||||||| |||||||||||| |    
T  39767005 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttgtagctcgtgagtttataacagcaccaatggaacgattaccatattagtttttatg 39766906  T
Q  256 ttta 259  Q
    ||||    
T  39766905 ttta 39766902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 4289728 - 4289756
Alignment:
Q  14 atcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||    
T  4289728 atcacaattgaaataaaactatgatccaa 4289756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 26787474 - 26787371
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||  ||||||||||||||| | ||||||||||||||||    
T  26787474 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttgtaactcgtgagcttatgaaggtaaggatgaaacgatcatcgtattagtttttagg 26787375  T
Q  256 ttta 259  Q
    ||||    
T  26787374 ttta 26787371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 28956790 - 28956687
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||| ||||| ||||||||    
T  28956790 gtgcatgctaaaataaaaatcaaattgatttaaatcataaatttgtagctcgtgagcttatgaaggtaaggatgaaacgattaccctattaatttttagg 28956691  T
Q  256 ttta 259  Q
    ||||    
T  28956690 ttta 28956687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 9162875 - 9162772
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||| || || | |||||||||||  ||||||||| ||||||||||||||||||||||||    
T  9162875 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttataccttgtgagcttatgaagttaaggatgacacgattaccgtattagtttttagg 9162776  T
Q  256 ttta 259  Q
    ||||    
T  9162775 ttta 9162772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 33119122 - 33119225
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||||||  ||||||||    
T  33119122 gtgcatactaaaataaacatcaaattgatttaaatcataaatttgtagctcttgagcttatgaaggtaaggatgaaacgattaccgtattgatttttagg 33119221  T
Q  256 ttta 259  Q
    ||||    
T  33119222 ttta 33119225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 2012965 - 2012862
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||   | | || ||||||||||| ||||||||||||||    
T  2012965 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttgtagctcgtgagcttatgaaggcacgaattaaacgattaccatattagtttttagg 2012866  T
Q  256 ttta 259  Q
    ||||    
T  2012865 ttta 2012862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 1600086 - 1600016
Alignment:
Q  189 atcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttaggttta 259  Q
    ||||||||||||||||||| ||| |||||||  ||||||||||| ||||||| ||||||||||||||||||    
T  1600086 atcataaatttgtagctcgtgagtttatgaaggtaaggatgaaatgattaccatattagtttttaggttta 1600016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 33118976 - 33119006
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  33118976 acatcacaattgaaataaaactatgatccaa 33119006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 41410280 - 41410250
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  41410280 acatcacaattgaaataaaactatgatccaa 41410250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 42096765 - 42096735
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  42096765 acatcacaattgaaataaaactatgatccaa 42096735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 45079228 - 45079198
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  45079228 acatcacaattgaaataaaactatgatccaa 45079198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 2013075 - 2013047
Alignment:
Q  14 atcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||    
T  2013075 atcacaattgaaataaaactatgatccaa 2013047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 30248075 - 30248047
Alignment:
Q  14 atcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||    
T  30248075 atcacaattgaaataaaactatgatccaa 30248047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 15542371 - 15542474
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||  |||||||||||||| || |||||||||||||||     
T  15542371 gtgcatgctgaaataaacatcaaattgatttaaatcataaatttgtagcttgtgagcttatgaaggtaaggatgaaacgaatatcgtattagtttttaga 15542470  T
Q  256 ttta 259  Q
    ||||    
T  15542471 ttta 15542474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 15961536 - 15961433
Alignment:
Q  156 gtgcatgctaagataaacatcaaattgatttaaatcataaatttgtagctcgcgagcttatgaaaataaggatgaaacgattaccgtattagtttttagg 255  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | ||| || ||||||||  ||||| |||||| ||||  ||||||||||||||     
T  15961536 gtgcatgctaaaataaacatcaaattgatttaaatcataaatttgtggttcgtgaacttatgaaggtaagggtgaaacaattattgtattagtttttagt 15961437  T
Q  256 ttta 259  Q
    ||||    
T  15961436 ttta 15961433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 20216297 - 20216327
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  20216297 acatcacaattgaaataaaactatgatccaa 20216327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 20235895 - 20235925
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  20235895 acatcacaattgaaataaaactatgatccaa 20235925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 37226606 - 37226556
Alignment:
Q  209 gagcttatgaaaataaggatgaaacgattaccgtattagtttttaggttta 259  Q
    |||||||||||  ||| || |||||||||| ||||||||||||||||||||    
T  37226606 gagcttatgaaggtaatgacgaaacgattagcgtattagtttttaggttta 37226556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 221827 - 221777
Alignment:
Q  209 gagcttatgaaaataaggatgaaacgattaccgtattagtttttaggttta 259  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  221827 gagcttatgaaggtaaggatgaaacgattaccgtattagtttttaggttta 221777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 6337329 - 6337359
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  6337329 acatcacaattgaaataaaactatgatccaa 6337359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 24447138 - 24447108
Alignment:
Q  12 acatcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||||    
T  24447138 acatcacaattgaaataaaactatgatccaa 24447108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 1221725 - 1221697
Alignment:
Q  14 atcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||    
T  1221725 atcacaattgaaataaaactatgatccaa 1221697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 26727 - 26755
Alignment:
Q  14 atcacaattgaaataaaactatgatccaa 42  Q
    |||||||||||||||||||||||||||||    
T  26727 atcacaattgaaataaaactatgatccaa 26755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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