View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_17 (Length: 521)
Name: NF10829A_low_17
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 6 - 509
Target Start/End: Complemental strand, 31346977 - 31346473
Alignment:
| Q |
6 |
caatggtcggaaattcatcaaactttttcttctctcaagaccaatcgatgttgaggatgcagttggagaatgagaatattggaacaacctcaaaccaaag |
105 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31346977 |
caatggtcggaaattcgtcaaactttttcttctctcaagaccaatcgctgttgaggatgcagttggagaatgagaatattggaacaacctcaaaccaaag |
31346878 |
T |
|
| Q |
106 |
cataaaccaagagttttcttttgggagatattctgatgatgatatctcatctgtggtatatggaaatggcatgtttcaaaggtggtttgggaatcaagaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31346877 |
cataaaccaagagttttcttttgggagatattctgatgatgatatctcatctgtggtatatggaaatggcatgcttcaaaggtggtttgggaatcaagaa |
31346778 |
T |
|
| Q |
206 |
ctgtcatcagcttctactggacatgtggtcagtgatagcgtgttgaatttctgattacaaac-aaatttcatgttggtagtgtgtctgcatgttcattta |
304 |
Q |
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||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31346777 |
ctgtcatcagcttctactggacatgtggtcaatgatagcttgaagaatttctgattacaaacaaaatttcatgttggtagtgtgtctgcatgttcattta |
31346678 |
T |
|
| Q |
305 |
tctattgtgttttgtggtatacatattttataaggtgtattgtatctatttaatccgaacttatctaaatttcagttgtaatatatattaccatcattga |
404 |
Q |
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| T |
31346677 |
tctattgtgttttgtggtatacatattttataaggtgtattgtatctattttatccgaacttatctaaatttcagttgtaatatatattaccatcattga |
31346578 |
T |
|
| Q |
405 |
catgcacccgcaattaaaagataattggttgggaaagtattccatgatctaaacacattagcttccgaaggagcacacagagagaaattcattcaacaaa |
504 |
Q |
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| T |
31346577 |
catgcacccgcaattaaaagataattggttgggaaagtattccatgatctaaacacattagcttctgaaggagcacacatagagaaattcattcaacaaa |
31346478 |
T |
|
| Q |
505 |
aacaa |
509 |
Q |
| |
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||||| |
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| T |
31346477 |
aacaa |
31346473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 6 - 349
Target Start/End: Complemental strand, 31357637 - 31357303
Alignment:
| Q |
6 |
caatggtcggaaattcatcaaactttttcttctctcaagaccaatcgatgttgaggatgcagttggagaatgagaatattggaacaacctcaaaccaaag |
105 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
31357637 |
caatggtcgggaattcgtcaaactttttcttctctcaagaacaattgctgttgaggatgcagttggagaatgagaatattggaacaacctcaaagaacat |
31357538 |
T |
|
| Q |
106 |
cataaaccaagagttttcttttgggagatattctgatgatgatatctcatctgtggtatatggaaatggcatgtttcaaaggtggtttgggaatcaagaa |
205 |
Q |
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| T |
31357537 |
c------------ttttcttttgggagagactctgatgctgatatctcatctgtggtatatggaaatggcatgtttcaaaagttgtcagagaatcaagaa |
31357450 |
T |
|
| Q |
206 |
ctgtcatcagcttctactggacatgtggtcagtgatagcgtgttgaatttctgattacaaac-aaatttcatgttgg--tagtgtgtctgcatgttcatt |
302 |
Q |
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||||| |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| |
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| T |
31357449 |
ttgtcaccagcttctactggacatgtggtcaatgatagcttgtggaatttctgattacaaacaaaatttcatgctggtatagtgtgtctgcatgttcatt |
31357350 |
T |
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| Q |
303 |
tatctattgtgttttgtggtatacatattttataaggtgtattgtat |
349 |
Q |
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| T |
31357349 |
tatctattgtgttttgtggtatacatattttatcaggtgtattgtat |
31357303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 342 - 515
Target Start/End: Complemental strand, 31357282 - 31357109
Alignment:
| Q |
342 |
tattgtatctatttaatccgaacttatctaaatttcagttgtaatatatattaccatcattgacatgcacccgcaattaaaagataattggttgggaaag |
441 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31357282 |
tattgtatctattttatccgaacttatctaaatttcagttgtaatatatattaccatcattgacatgcacccgcaattaaaagataattggttgggaaag |
31357183 |
T |
|
| Q |
442 |
tattccatgatctaaacacattagcttccgaaggagcacacagagagaaattcattcaacaaaaacaaaagatg |
515 |
Q |
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|||||||||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||| |||||||| |
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| T |
31357182 |
tattccatgatctaaacatattagcttcagaaggagcacgcatagagaaattcattcaacaaaaagaaaagatg |
31357109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 140 - 297
Target Start/End: Original strand, 2920466 - 2920624
Alignment:
| Q |
140 |
gatgatgatatctcatctgtggtatatggaaatggcatgtttcaaaggtggtttgggaatcaagaactgtcatcagcttctactggacatgtggtcagtg |
239 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| ||||||||||||||| || | || || |
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| T |
2920466 |
gatgctgatatctcatctgtggtatatggaaatgacatgtttcaaaggtggtctgggtatcaagatttgtcaccagcttctactggacttgcagccaatg |
2920565 |
T |
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| Q |
240 |
atagcgtgttgaatttctgattacaaac-aaatttcatgttggtagtgtgtctgcatgt |
297 |
Q |
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||||| | | |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2920566 |
atagcttctggaatttctgattacaaacaaaatttcatgttggtagtgtgtctgcatgt |
2920624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 140 - 297
Target Start/End: Original strand, 2925851 - 2926009
Alignment:
| Q |
140 |
gatgatgatatctcatctgtggtatatggaaatggcatgtttcaaaggtggtttgggaatcaagaactgtcatcagcttctactggacatgtggtcagtg |
239 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| ||||||||||||||| || | || || |
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| T |
2925851 |
gatgctgatatctcatctgtggtatatggaaatgacatgtttcaaaggtggtctgggtatcaagatttgtcaccagcttctactggacttgcagccaatg |
2925950 |
T |
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| Q |
240 |
atagcgtgttgaatttctgattacaaac-aaatttcatgttggtagtgtgtctgcatgt |
297 |
Q |
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| T |
2925951 |
atagcttctggaatttctgattacaaacaaaatttcttgttggtagtgtgtctgcatgt |
2926009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 2920690 - 2920743
Alignment:
| Q |
339 |
gtgtattgtatctatttaatccgaacttatctaaatttcagttgtaatatatat |
392 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |
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| T |
2920690 |
gtgtattgtatctattttatctgaacttatctaaatttcagttgtaataaatat |
2920743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 2921540 - 2921604
Alignment:
| Q |
328 |
tattttataaggtgtattgtatctatttaatccgaacttatctaaatttcagttgtaatatatat |
392 |
Q |
| |
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|||||||| ||||||||||| ||||||| || | ||||||||||||||||| |||||||||||| |
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| T |
2921540 |
tattttatcaggtgtattgtgtctattttatatgtacttatctaaatttcagctgtaatatatat |
2921604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 392
Target Start/End: Original strand, 2926823 - 2926886
Alignment:
| Q |
329 |
attttataaggtgtattgtatctatttaatccgaacttatctaaatttcagttgtaatatatat |
392 |
Q |
| |
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||||||| ||||||||||||| ||||| || | ||||||||| |||||||||||||||||||| |
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| T |
2926823 |
attttatcaggtgtattgtatttattttatatgtacttatctatatttcagttgtaatatatat |
2926886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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