View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_171 (Length: 312)

Name: NF10829A_low_171
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_171
NF10829A_low_171
[»] chr1 (16 HSPs)
chr1 (5-300)||(13244622-13244917)
chr1 (96-300)||(12963976-12964180)
chr1 (88-300)||(30368209-30368421)
chr1 (97-287)||(13271474-13271664)
chr1 (20-300)||(13100812-13101091)
chr1 (13-300)||(13080966-13081253)
chr1 (88-300)||(13094278-13094490)
chr1 (88-300)||(13070277-13070489)
chr1 (13-300)||(13085911-13086198)
chr1 (18-300)||(13007009-13007291)
chr1 (88-300)||(13129707-13129919)
chr1 (18-300)||(13204268-13204550)
chr1 (14-300)||(13065314-13065600)
chr1 (88-298)||(13161400-13161610)
chr1 (96-300)||(19279269-19279473)
chr1 (97-156)||(13010661-13010720)
[»] chr7 (1 HSPs)
chr7 (142-300)||(12164206-12164364)
[»] chr6 (4 HSPs)
chr6 (213-299)||(377572-377658)
chr6 (213-296)||(341859-341942)
chr6 (214-299)||(346845-346930)
chr6 (214-299)||(355504-355589)
[»] chr8 (1 HSPs)
chr8 (271-300)||(36668187-36668216)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 300
Target Start/End: Complemental strand, 13244917 - 13244622
Alignment:
Q  5 caactttgttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttc 104  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  13244917 caactttgttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttc 13244818  T
Q  105 caccacctgtatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattg 204  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  13244817 caccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattg 13244718  T
Q  205 aaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 300  Q
    ||||||||||||||||||||||| |||| || ||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13244717 aaagctatgaacttgtaagacggtacatttataatccctcctctagctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 13244622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 96 - 300
Target Start/End: Complemental strand, 12964180 - 12963976
Alignment:
Q  96 gtgaccttccaccacctgtatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 195  Q
    ||||||||||||||| | |||| |||||||||| | || |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12964180 gtgaccttccaccacttctatgtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 12964081  T
Q  196 cctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctcccc 295  Q
    ||||||||||| ||||||||||| ||||| || || |||| |||  ||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  12964080 cctgcattgaatgctatgaacttataagatggcacttgtataatttctcctctatttgatatccatctttcaggcttaaattccaagcaatcttctcccc 12963981  T
Q  296 atatt 300  Q
    |||||    
T  12963980 atatt 12963976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 300
Target Start/End: Complemental strand, 30368421 - 30368209
Alignment:
Q  88 gttacagggtgaccttccaccacctgtatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 187  Q
    |||||||||||||||||||| ||||||||| |||||||||||| ||| | |||||||||||| ||||||||||| || |||| |||||| || |||||||    
T  30368421 gttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaac 30368322  T
Q  188 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 287  Q
    ||||||| |||| |||||||||||||||||||||||| || ||||||| ||||  ||||||  | |||| |||||| |||||||||||||||| ||||||    
T  30368321 ttctaggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgatacccatctctcaggcttaaattccatgcaatc 30368222  T
Q  288 ttctccccatatt 300  Q
    |||||||||||||    
T  30368221 ttctccccatatt 30368209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 97 - 287
Target Start/End: Original strand, 13271474 - 13271664
Alignment:
Q  97 tgaccttccaccacctgtatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggac 196  Q
    |||||||||||||| |||||| ||||||||||||  | |||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  13271474 tgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttcccaagacagcttctaggac 13271573  T
Q  197 ctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 287  Q
    |||||||||| ||||||||||||||||| || ||||||| |||   |||| || | ||||||||||| ||||||||||| |||||||||||    
T  13271574 ctgcattgaatgctatgaacttgtaagatggtacatgtataatttgtcctttatctgatatccatctctcaggcttaaactccaagcaatc 13271664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 13100812 - 13101091
Alignment:
Q  20 aaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatgcg 119  Q
    |||||||||||||| ||| || |||||| ||||| ||||||||| ||||  ||| ||||    || | |||| ||||||||||||||||||||||||| |    
T  13100812 aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg 13100911  T
Q  120 aaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttg 219  Q
    |||||||  || ||||| |||||| ||||| ||||||||||  ||||||||||| || || |||||||||||||| |||| |||||||||||||||||||    
T  13100912 aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggtcctg-attgaaagctatgaacttg 13101010  T
Q  220 taagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 300  Q
    ||||| || ||||||| ||||  ||||||  | || | |||||| |||||||||||||||| ||| |||||||||||||||    
T  13101011 taagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatatt 13101091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 13081253 - 13080966
Alignment:
Q  13 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 112  Q
    ||||||||||||||||||||||  |||| |||||| ||||| |||| ||||||||||  |||||||   ||  |  |||  | |||||||||||||||||    
T  13081253 ttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccctaggaattattgagtgaccttccaccacct 13081154  T
Q  113 gtatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 212  Q
    | ||| |||||||  |||  |  | ||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||| ||||||||||| || |||||    
T  13081153 gaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttggacctgcattaaacgctat 13081054  T
Q  213 gaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 300  Q
    |||||| |||||||| || |||| |||   ||||||| | ||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  13081053 gaacttataagacggcacttgtataatttgtcctctatctgatatccatctctcaggcttaaactccaagcaatcctctccccatatt 13080966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 88 - 300
Target Start/End: Original strand, 13094278 - 13094490
Alignment:
Q  88 gttacagggtgaccttccaccacctgtatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 187  Q
    |||||||||||||||||||||||||||||| ||||||||| || ||||| |||||| ||||| ||||||||||  || ||||||||||| || ||||||     
T  13094278 gttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatacaaa 13094377  T
Q  188 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 287  Q
    |||| || ||||  ||||||||||||||||||||||| || ||||||| |||  |||| ||  | ||||||||||| |||||||||||||||| ||| ||    
T  13094378 ttctgggtcctgtgttgaaagctatgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtc 13094477  T
Q  288 ttctccccatatt 300  Q
    |||||||||||||    
T  13094478 ttctccccatatt 13094490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 88 - 300
Target Start/End: Complemental strand, 13070489 - 13070277
Alignment:
Q  88 gttacagggtgaccttccaccacctgtatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 187  Q
    |||||||||||||||||||||||||||||| ||||||||  || ||||| |||||| ||||| ||||||||||  || |||| |||||| || | |||||    
T  13070489 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaac 13070390  T
Q  188 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 287  Q
    |||| ||||||| |||||||||||||||||||||||| || ||||||| ||||  |||| |  | |||| |||||| |||||||||||||||| ||| ||    
T  13070389 ttctcggacctgtattgaaagctatgaacttgtaagatggaacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtc 13070290  T
Q  288 ttctccccatatt 300  Q
    |||||||||||||    
T  13070289 ttctccccatatt 13070277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 13085911 - 13086198
Alignment:
Q  13 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 112  Q
    ||||||||||| ||||||||||| | || ||| || || || |||| |||||| ||  ||||||||  |||  | |||||||  ||||||||||| || |    
T  13085911 ttatatcaaattcatcttttactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaactt 13086010  T
Q  113 gtatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 212  Q
    ||||| |||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| || |||||    
T  13086011 gtatgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctat 13086110  T
Q  213 gaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 300  Q
    ||||||| |||| || ||||| | |||   |||| || | ||||||||||| || ||||||||||| |||| ||| |  |||||||||    
T  13086111 gaacttgcaagatggtacatgcaaaatatgtcctttatctgatatccatctctcgggcttaaattcgaagcgatccttaccccatatt 13086198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 13007009 - 13007291
Alignment:
Q  18 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 117  Q
    |||||||||||||||| ||| ||  ||||| ||||| ||||||||| ||||  ||| ||||    || | |||| |||||||||| ||||||||| ||||    
T  13007009 tcaaatgcatcttttagtgactttaaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgacctgccaccacctttatg 13007108  T
Q  118 cgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 217  Q
     |||||||   || |||||  ||||| ||||| ||||||||||  ||||||||||| || || ||||||||||||||||||| |||||||||||||||||    
T  13007109 tgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggacctgtattgaaagctatgaact 13007208  T
Q  218 tgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 300  Q
    ||||||| || ||||||| ||||  ||||||  | || | |||||| |||||||||||||||| ||| |||||||||||||||    
T  13007209 tgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatatt 13007291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 88 - 300
Target Start/End: Original strand, 13129707 - 13129919
Alignment:
Q  88 gttacagggtgaccttccaccacctgtatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 187  Q
    |||||||||||||||||||||||||||||| ||||||||  || ||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13129707 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13129806  T
Q  188 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 287  Q
    |||| || ||||  |||||||||| |||||||||||| || ||||||| |||  |||| ||  | ||||||||||| |||||||||||||||| ||| ||    
T  13129807 ttctgggtcctgtgttgaaagctacgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtc 13129906  T
Q  288 ttctccccatatt 300  Q
    |||||||||||||    
T  13129907 ttctccccatatt 13129919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 13204268 - 13204550
Alignment:
Q  18 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 117  Q
    |||||||||||||||| ||| ||  |||||||| || | ||||||| ||||  ||| |||| |  |  | |||||||||||||||||||| | || ||||    
T  13204268 tcaaatgcatcttttagtgactttaacctttaaaccatatttcatgtgaagaacaaaagaaatctttggggttacagggtgaccttccactatctttatg 13204367  T
Q  118 cgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 217  Q
     |||| |||  || ||||| |||||| ||||| ||||||||||  || |||| |||||| || | ||||||||||||||||| |||||||||||||||||    
T  13204368 tgaaaattctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctaggacctgtattgaaagctatgaact 13204467  T
Q  218 tgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 300  Q
    ||||||| || ||||||| ||||  |||| |  | |||| |||||| |||||||||||||||| ||| |||||||||||||||    
T  13204468 tgtaagatggtacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtcttctccccatatt 13204550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 13065600 - 13065314
Alignment:
Q  14 tatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctg 113  Q
    |||||||||||||||||||| ||| |  |||||| ||||| |||||||| |  |||| |||||||   ||  | |||||||| ||||| ||||| |  ||    
T  13065600 tatatcaaatgcatcttttagtgactatgaccttcaagccatgtttcattccgagggtaatagaaagccttggagttacaggatgaccatccactaaatg 13065501  T
Q  114 tatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatg 213  Q
    ||||| |||||||||||| | ||  || ||| |||| ||||||| ||| ||| | |||||||| || | ||||||||| || ||||||||||||||||||    
T  13065500 tatgcaaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatg 13065401  T
Q  214 aacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 300  Q
    |||||||||||||| ||||||| |||   ||| ||    ||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  13065400 aacttgtaagacggtacatgtataatttgtccgctttttgatatccatctctcaggcttaaattccatgcagtcttctccccatatt 13065314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 88 - 298
Target Start/End: Original strand, 13161400 - 13161610
Alignment:
Q  88 gttacagggtgaccttccaccacctgtatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 187  Q
    |||||| ||||||||||||||||||||||| ||||||||| || ||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13161400 gttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13161499  T
Q  188 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 287  Q
    |||| || ||||  ||||||| ||||||||||||||| || ||||||| |||  |||| ||  | ||||||||||| |||||||||||||||| ||| ||    
T  13161500 ttctgggtcctgtgttgaaagatatgaacttgtaagaaggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtc 13161599  T
Q  288 ttctccccata 298  Q
    ||| |||||||    
T  13161600 ttccccccata 13161610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 96 - 300
Target Start/End: Complemental strand, 19279473 - 19279269
Alignment:
Q  96 gtgaccttccaccacctgtatgcgaaacttccatagcaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 195  Q
    |||||||||||| ||||||||||||||||||||||  | || |||||||||||||||||||||||  ||  |||||||||| || | ||| ||||| |||    
T  19279473 gtgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcgga 19279374  T
Q  196 cctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctcccc 295  Q
    |||||||| || |||||||||||||| || || ||||||| |||   ||||||| ||||||||||||| ||||||  |||||| | |||||| || ||||    
T  19279373 cctgcattaaacgctatgaacttgtacgatggtacatgtataatttgtcctctatccgatatccatctctcaggccgaaattctaggcaatcatcacccc 19279274  T
Q  296 atatt 300  Q
    |||||    
T  19279273 atatt 19279269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 13010661 - 13010720
Alignment:
Q  97 tgaccttccaccacctgtatgcgaaacttccatagcaaagaagctgcaaccattttcatt 156  Q
    |||||||||||||| ||||||||||| ||||||| ||||  |||||| ||||| ||||||    
T  13010661 tgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatcttcatt 13010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 300
Target Start/End: Original strand, 12164206 - 12164364
Alignment:
Q  142 gcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgc 241  Q
    |||||||||||||| | ||  ||||| ||||| || || | |||||| || || || ||||| ||||| |||||||||||||| || ||||  || || |    
T  12164206 gcaaccattttcatctcaatgaagcttatatccttacccaaacaactccttggtccagcattaaaagcaatgaacttgtaagaaggaacataaactatcc 12164305  T
Q  242 ctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 300  Q
    ||||| |    || ||||| || || |||||||||||||||||||||||||||||||||    
T  12164306 ctcctttttgagaaatccacctctctggcttaaattccaagcaatcttctccccatatt 12164364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 377658 - 377572
Alignment:
Q  213 gaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatat 299  Q
    |||||| ||||||||  |||| |||||||  |||||  | ||||||||||| || ||||| || |||||||||||||||||||||||    
T  377658 gaacttataagacggttcatgaacaatgctacctctctcagatatccatctctctggcttgaactccaagcaatcttctccccatat 377572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 341942 - 341859
Alignment:
Q  213 gaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctcccca 296  Q
    |||||||||||||||  |||  ||||||||||||||  | || ||||| || || |||||||| ||||||||||||| ||||||    
T  341942 gaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaactccaagcaatcttttcccca 341859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 346845 - 346930
Alignment:
Q  214 aacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatat 299  Q
    ||||||||||| ||   ||| ||||||||||||||  | ||||||||||| || ||||| || ||||| ||||||| |||||||||    
T  346845 aacttgtaagatggtgtatgaacaatgcctcctctctcagatatccatctctctggcttgaactccaaacaatcttttccccatat 346930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 355504 - 355589
Alignment:
Q  214 aacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatat 299  Q
    ||||||||||| ||   ||| ||||||||||||||  | ||||||||||| || ||||| || ||||| ||||||| |||||||||    
T  355504 aacttgtaagatggtgtatgaacaatgcctcctctctcagatatccatctctctggcttgaactccaaacaatcttttccccatat 355589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 36668187 - 36668216
Alignment:
Q  271 ttaaattccaagcaatcttctccccatatt 300  Q
    ||||||||||||||||||||||||||||||    
T  36668187 ttaaattccaagcaatcttctccccatatt 36668216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University