View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_175 (Length: 310)
Name: NF10829A_low_175
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_175 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 31114667 - 31114519
Alignment:
| Q |
163 |
gtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggatc |
262 |
Q |
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| T |
31114667 |
gtccatgaatcgaccaaagtgaacccagttcactgtgtttctgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggacc |
31114568 |
T |
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| Q |
263 |
cacctctttgaatggacattggttct-aaagcttatttgattgggagaa |
310 |
Q |
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| T |
31114567 |
caactcttagaaaggacattggttctaaaagcttatttgattgggagaa |
31114519 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 31114739 - 31114681
Alignment:
| Q |
37 |
atggacatcaaccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat |
95 |
Q |
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| T |
31114739 |
atggacatcaaccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat |
31114681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 31088611 - 31088499
Alignment:
| Q |
136 |
ttgagagtgggggttgaacataattgcgtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagata |
235 |
Q |
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| T |
31088611 |
ttgagagtgtgggttgaacataattgtatccacgaatcaacgaaagtgaacccacttctctgtgtttctttgatagaagcttatatcatcaaagcggaca |
31088512 |
T |
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| Q |
236 |
atggagagtgagt |
248 |
Q |
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| T |
31088511 |
acagagagtgagt |
31088499 |
T |
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