View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_18 (Length: 519)
Name: NF10829A_low_18
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 66 - 502
Target Start/End: Complemental strand, 7898694 - 7898250
Alignment:
| Q |
66 |
acaaggtggctctcataaccaacagcagaaaaaacggcaggccgccaccaaaaagctaccaaaaactaacaaacatcagcacctaagccaacacagctaa |
165 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7898694 |
acaaggtggctgtcataaccaacagcagaaaaaacggcaggccgccaccaaaaagctaccaaaaactaacaaacaccagcacctaagccaacacagctaa |
7898595 |
T |
|
| Q |
166 |
tgctcctaaacaacaccaccaagaccacctac--------gcatcaactacctacctaagcactctctcggattccaacaccattcataaaataagcaag |
257 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7898594 |
tgctcctaaacaacgccaccaataccacctacagcaagttgcatcaactacctacctaagcactctctcggattccaacaccattcataaaataagcaag |
7898495 |
T |
|
| Q |
258 |
atgagattttaagtctattcaaactccaattccacaagagtactttaatctcttcaaccatttcatcaacctccttaaccttgtcattgaaaatccggtc |
357 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7898494 |
atgagattttaagtctattcaaactccaattccacaagagtactttaatctcctcaaccatttcatcaacctccttaaccttgtcattgaaaatccggtc |
7898395 |
T |
|
| Q |
358 |
atttctagaattccaaattacccaaataaccgaatgccaaattagccaagcccctctcctccatttcttcttgcaccacatgcccaaccaacaatcaata |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7898394 |
atttctagaattccaaattacccaaataaccgaatgccaaattagccaagcccctctcctccatttcttcttgcaccacatgcccaaccaacaatcaata |
7898295 |
T |
|
| Q |
458 |
tggatgaataaattaggtgaattaataagaaagaattgcaaccac |
502 |
Q |
| |
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| T |
7898294 |
tggatgaataaattaggtgaattaataagaaagaattgcaaccac |
7898250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 363
Target Start/End: Original strand, 21281457 - 21281601
Alignment:
| Q |
218 |
cactctctcggattccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagagtactttaatctcttcaacca |
317 |
Q |
| |
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||||||||| ||||||| |||||||| ||||| |||||||| || || | || ||||||||||||||| | || | | || ||| || || || |||| |
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| T |
21281457 |
cactctctcagattccagcaccattcgtaaaacaagcaagacgaaatcctgagcctattcaaactccaactagacgaaa-taattttatttcctccacca |
21281555 |
T |
|
| Q |
318 |
tttcatcaacctccttaaccttgtcattgaaaatccggtcatttct |
363 |
Q |
| |
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|||||||||||||||||| |||| ||| |||||| |||||||||| |
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| T |
21281556 |
tttcatcaacctccttaattttgttattaaaaatctggtcatttct |
21281601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 7898721 - 7898692
Alignment:
| Q |
23 |
acttcacattacccatacaagggagagaca |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
7898721 |
acttcacattacccatacaagggagagaca |
7898692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 427
Target Start/End: Original strand, 36857174 - 36857394
Alignment:
| Q |
209 |
ctacctaagcactctctcggattccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagagtactttaatct |
308 |
Q |
| |
|
||||| || |||||||| |||||||||||||||| ||| || || ||||| | ||||| || | ||||||||||| | |||| |||| || || | | |
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| T |
36857174 |
ctacccaaacactctctaggattccaacaccatttatagaacaaacaagacggaatttttagccggttcaaactccattgccacgagagaaccttgactt |
36857273 |
T |
|
| Q |
309 |
cttcaaccatttcatcaacctc--cttaaccttgtcattgaaaatccggtcatttctagaattccaaattacccaaataaccgaatgccaaattagccaa |
406 |
Q |
| |
|
| || ||||||||||||||||| ||| ||||| | || || |||| ||||||||| || |||||||| |||||||| ||||| ||||||||| |||| |
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|
| T |
36857274 |
cctccaccatttcatcaacctctacttgaccttattgttaaagatccagtcatttctcgacttccaaataacccaaattgccgaaagccaaattaaccaa |
36857373 |
T |
|
| Q |
407 |
gcccctctcctccatttcttc |
427 |
Q |
| |
|
||||||||| || |||||||| |
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|
| T |
36857374 |
gcccctctcttcaatttcttc |
36857394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 230 - 341
Target Start/End: Complemental strand, 14340077 - 14339966
Alignment:
| Q |
230 |
ttccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagagtactttaatctcttcaaccatttcatcaacct |
329 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||| | |||||||||||||||| |||||||| ||| ||||| || || |||||||| |||||| |
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| T |
14340077 |
ttccaacaccattcttaaaataaacaggacaagatttttaacctattcaaactccaataccacaagactaccttaatttcctccaccatttcgacaacct |
14339978 |
T |
|
| Q |
330 |
ccttaaccttgt |
341 |
Q |
| |
|
|||| ||||||| |
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|
| T |
14339977 |
cctttaccttgt |
14339966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 317 - 412
Target Start/End: Original strand, 27895122 - 27895217
Alignment:
| Q |
317 |
atttcatcaacctccttaaccttgtcattgaaaatccggtcatttctagaattccaaattacccaaataaccgaatgccaaattagccaagcccct |
412 |
Q |
| |
|
||||||||||| ||||||||||||| || || |||| ||||||||| || || ||||| |||||||| |||||||||||||||| |||| ||||| |
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|
| T |
27895122 |
atttcatcaacatccttaaccttgttgttaaagatcccgtcatttctcgattttcaaataacccaaattaccgaatgccaaattaaccaaacccct |
27895217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 27895037 - 27895114
Alignment:
| Q |
220 |
ctctctcggattccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagag |
297 |
Q |
| |
|
||||||||| || || |||||||| ||||||||||| ||| | ||| || |||||||||||||||||| ||||||| |
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|
| T |
27895037 |
ctctctcgggtttcagcaccattcgtaaaataagcatgatagaacttttagcctattcaaactccaattctacaagag |
27895114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 8560187 - 8560267
Alignment:
| Q |
203 |
aactacctacctaagcactctctcggattccaacaccattcataaaataagcaagatgagattttaagtctattcaaactc |
283 |
Q |
| |
|
|||||||||| ||||||| ||| || |||||||||||||||||||| ||| | ||||||||||||| ||||| |||||| |
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|
| T |
8560187 |
aactacctacacaagcactttcttgggttccaacaccattcataaaacaagtatgatgagattttaaacctattaaaactc |
8560267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 43441336 - 43441377
Alignment:
| Q |
217 |
gcactctctcggattccaacaccattcataaaataagcaaga |
258 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||||| |
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|
| T |
43441336 |
gcactctctcggattccaacaccactcgtaaaagaagcaaga |
43441377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 30995509 - 30995466
Alignment:
| Q |
217 |
gcactctctcggattccaacaccattcataaaataagcaagatg |
260 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
30995509 |
gcactctctcggattccaacaccattcgtaaaataggcaagatg |
30995466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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