View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_182 (Length: 301)
Name: NF10829A_low_182
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_182 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 295
Target Start/End: Original strand, 5352953 - 5353241
Alignment:
| Q |
7 |
cttgacatatcagataatcaatatctccatggctctttatcagactttccaccgcttgcagctcttcaatacttgaatctaagccatacaaatttctcag |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5352953 |
cttgacatatcagataatcaatatctccatggttctttaccagactttccaccgcttgcagctcttcaatacttgaatctaagccatacaaatttctcag |
5353052 |
T |
|
| Q |
107 |
gatcgcttccaaatactatttccaatctgaagcatttgtctaccattgatctatcttactgccaattcaatggaacacttcctagatcaatgtcaaaact |
206 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
5353053 |
gatcgcttccaaattctttttccaatctgaagcatttgtctactattgatctatcttactgtcaattcaatggaacacttcctagatcaatgtcaaaact |
5353152 |
T |
|
| Q |
207 |
cacccaacttctttatctcgatctatcttcgaataatctaacaggtccactcccttctttcaatatgtccaaaaatctcacatatatat |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5353153 |
cacccaacttctttatctcgatctatcttcgaataatctaacaggtccactcccttctttcaatatgtccaaaaacctcacatatatat |
5353241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 5391619 - 5391903
Alignment:
| Q |
7 |
cttgacatatcagataatcaatatctccatggctctttatcagactttccaccgcttgcagctcttcaatacttgaatctaagccatacaaatttctcag |
106 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||| || ||||||||||||| |||||| ||||||| ||||| ||||| | | ||||||||||||||| |
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|
| T |
5391619 |
cttgacatatcagacaatcaaaatctcaatggctcattgccagactttccaccacttgcatctcttcactacttaaatctcaccaatacaaatttctcag |
5391718 |
T |
|
| Q |
107 |
gatcgcttccaaatactatttccaatctgaagcatttgtctaccattgatctatcttactgccaattcaatggaacacttcctagatcaatgtcaaaact |
206 |
Q |
| |
|
|| | |||||||||||||| |||||||| ||||| || || || |||||||||||||| ||||||||||| ||||||||||| || ||||||||| |||| |
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|
| T |
5391719 |
gaccacttccaaatactatctccaatctaaagcagttatcaacaattgatctatcttattgccaattcaacggaacacttcccagttcaatgtcagaact |
5391818 |
T |
|
| Q |
207 |
cacccaacttctttatctcgatctatcttcgaataatctaacaggtccactcccttctttcaatatgtccaaaaatctcacatat |
291 |
Q |
| |
|
|||||||||| | ||||| || | ||||| || | || ||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
5391819 |
cacccaacttgtgtatctagacatgtcttccaactacctcacaggtccactcccttctttcaatatgtcgaagaatctcacatat |
5391903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 5469722 - 5469438
Alignment:
| Q |
7 |
cttgacatatcagataatcaatatctccatggctctttatcagactttccaccgcttgcagctcttcaatacttgaatctaagccatacaaatttctcag |
106 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||| | ||| ||||||| ||| | |||||| |||||| ||| ||||| || || ||||||| |||| |
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|
| T |
5469722 |
cttgacatatcaaacaatcaatatcttcatggtccgttagcagacttcccagcacttgcatctcttcgatatttgaaactcgcgaattcaaatttttcag |
5469623 |
T |
|
| Q |
107 |
gatcgcttccaaatactatttccaatctgaagcatttgtctaccattgatctatcttactgccaattcaatggaacacttcctagatcaatgtcaaaact |
206 |
Q |
| |
|
|| | |||||||||||||| |||||||| ||||| || || ||||||||||||||||| ||||| ||||||||||||||||| | ||||||||| |||| |
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|
| T |
5469622 |
gagcacttccaaatactatctccaatctaaagcagttatcaaccattgatctatcttattgccagttcaatggaacacttcccaattcaatgtcagaact |
5469523 |
T |
|
| Q |
207 |
cacccaacttctttatctcgatctatcttcgaataatctaacaggtccactcccttctttcaatatgtccaaaaatctcacatat |
291 |
Q |
| |
|
|||||||||| ||||||| || | ||||| ||||| || |||||| ||||||||||||||||||||||||| || ||||||||| |
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|
| T |
5469522 |
cacccaacttgtttatctagacgtgtcttccaataacctcacaggtacactcccttctttcaatatgtccaagaacctcacatat |
5469438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 291
Target Start/End: Original strand, 5411150 - 5411349
Alignment:
| Q |
92 |
atacaaatttctcaggatcgcttccaaatactatttccaatctgaagcatttgtctaccattgatctatcttactgccaattcaatggaacacttcctag |
191 |
Q |
| |
|
|||||||||||| |||| | |||||||||||||| |||||||||||||| | || ||||||||||||||||||||| ||||||||||||| |||| | |
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|
| T |
5411150 |
atacaaatttcttaggaccacttccaaatactatctccaatctgaagcagatatcaaccattgatctatcttactgcaaattcaatggaacgattcccaa |
5411249 |
T |
|
| Q |
192 |
atcaatgtcaaaactcacccaacttctttatctcgatctatcttcgaataatctaacaggtccactcccttctttcaatatgtccaaaaatctcacatat |
291 |
Q |
| |
|
||||||||| |||||||||||||| ||||| | || | ||||| ||||| || ||||||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
5411250 |
ttcaatgtcagaactcacccaacttgtttatttagacatgtcttccaataacctcacaggtccactcccttcgttcaatatgtccaagaacctcacatat |
5411349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 5348108 - 5347891
Alignment:
| Q |
7 |
cttgacatatcagataatcaatatctccatggctctttatcagactttccaccgcttgcagctcttcaatacttgaatctaagccatacaaatttctcag |
106 |
Q |
| |
|
|||||||||||||| |||||| |||| |||| ||||| |||| || |||| |||||| |||| | ||||| ||||| | ||||||||||||||| |
|
|
| T |
5348108 |
cttgacatatcagacaatcaaaatcttaatggttctttgccagatttctcaccacttgcatctctgaagtacttaaatcttgccgatacaaatttctcag |
5348009 |
T |
|
| Q |
107 |
gatcgcttccaaatactatttccaatctgaagcatttgtctaccattgatctatcttactgccaattcaatggaacacttcctagatcaatgtcaaaact |
206 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||| |||| || ||||| |||||| |||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
5348008 |
gaccacttccaaatactatctccaatctgaagcacctgtcgactattgacctatctcactgccaattcaatggaacacttcctagttcaatgtctgaact |
5347909 |
T |
|
| Q |
207 |
cacccaacttctttatct |
224 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
5347908 |
cacccaacttgtttatct |
5347891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 5425428 - 5425211
Alignment:
| Q |
7 |
cttgacatatcagataatcaatatctccatggctctttatcagactttccaccgcttgcagctcttcaatacttgaatctaagccatacaaatttctcag |
106 |
Q |
| |
|
|||||||||||| | |||||| |||| |||| ||||| |||| || || | |||||| ||||| | ||||| ||||| | ||||||||||||||| |
|
|
| T |
5425428 |
cttgacatatcatacaatcaaaatcttaatggttctttgccagatttctcaacacttgcatctcttaagtacttaaatcttgccgatacaaatttctcag |
5425329 |
T |
|
| Q |
107 |
gatcgcttccaaatactatttccaatctgaagcatttgtctaccattgatctatcttactgccaattcaatggaacacttcctagatcaatgtcaaaact |
206 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||| |||| || |||||||||||| ||||||||||||||||||||||||| || |||||||| || || |
|
|
| T |
5425328 |
gaccacttccaaatactatctccaatctgaagcacctgtcgactattgatctatctcactgccaattcaatggaacacttcccagttcaatgtctaagct |
5425229 |
T |
|
| Q |
207 |
cacccaacttctttatct |
224 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
5425228 |
cacccaacttgtttatct |
5425211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 5500888 - 5501087
Alignment:
| Q |
76 |
tacttgaatctaagccatacaaatttctcaggatcgcttccaaatactatttccaatctgaagcatttgtctaccattgatctatcttactgccaattca |
175 |
Q |
| |
|
||||||||||| | |||||||||| || ||| | |||||||||||||| |||||||||||||| || || ||||||||||| |||||||||||||||| |
|
|
| T |
5500888 |
tacttgaatcttgccaatacaaatttttctggaccacttccaaatactatatccaatctgaagcagttatcaaccattgatctctcttactgccaattca |
5500987 |
T |
|
| Q |
176 |
atggaacacttcctagatcaatgtcaaaactcacccaacttctttatctcgatctatcttcgaataatctaacaggtccactcccttctttcaatatgtc |
275 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||| ||||| ||| ||| || |||| || ||||| | |||||| | || ||||||||||||||||| |
|
|
| T |
5500988 |
atggaacacttcccagttcaatgtcagaactcactaaacttgtttttctagacttatcctcaaataacatcacaggttcccttccttctttcaatatgtc |
5501087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 5377299 - 5377516
Alignment:
| Q |
7 |
cttgacatatcagataatcaatatctccatggctctttatcagactttccaccgcttgcagctcttcaatacttgaatctaagccatacaaatttctcag |
106 |
Q |
| |
|
|||||||||||||| |||||| |||| ||| ||||| ||||||| |||| |||||| ||||| | ||| | ||||| | ||||||||||||||| |
|
|
| T |
5377299 |
cttgacatatcagacaatcaaaatcttagtggttctttgccagacttctcaccacttgcatctcttaagtacctaaatcttgccgatacaaatttctcag |
5377398 |
T |
|
| Q |
107 |
gatcgcttccaaatactatttccaatctgaagcatttgtctaccattgatctatcttactgccaattcaatggaacacttcctagatcaatgtcaaaact |
206 |
Q |
| |
|
|| | || ||||||||||| || ||||||||||| |||| || |||||||||||| ||||||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
5377399 |
gaccactaccaaatactatctcaaatctgaagcacctgtcgactattgatctatctcactgccaattcaatggaacacttcccagttcaatgtctgaact |
5377498 |
T |
|
| Q |
207 |
cacccaacttctttatct |
224 |
Q |
| |
|
||||||| || ||||||| |
|
|
| T |
5377499 |
cacccaaattgtttatct |
5377516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 20327475 - 20327690
Alignment:
| Q |
7 |
cttgacatatcagataatcaatatctccatggctctttatcagactttccaccgcttgcagctcttcaatacttgaatctaagccatacaaatttctcag |
106 |
Q |
| |
|
|||||||||||||| |||||| |||| ||| ||||| ||||||| |||| |||||| ||||| | ||| | ||||| | ||||||||||||||| |
|
|
| T |
20327475 |
cttgacatatcagacaatcaaaatcttagtggttctttgccagacttctcaccacttgcatctcttaagtacctaaatcttgccgatacaaatttctcag |
20327574 |
T |
|
| Q |
107 |
gatcgcttccaaatactatttccaatctgaagcatttgtctaccattgatctatcttactgccaattcaatggaacacttcctagatcaatgtcaaaact |
206 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||| |||| || |||||||||||| ||||||||||||||||||||||||| || |||||||| | || |
|
|
| T |
20327575 |
gaccacttccaaatactatctccaatctgaagcacctgtcgactattgatctatctcactgccaattcaatggaacacttcccagttcaatgtctgagct |
20327674 |
T |
|
| Q |
207 |
cacccaacttctttat |
222 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
20327675 |
cacccaacttgtttat |
20327690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 32547238 - 32547361
Alignment:
| Q |
77 |
acttgaatctaagccatacaaatttctcaggatcgcttccaaatactatttccaatctgaagcatttgtctaccattgatctatcttactgccaattcaa |
176 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| | ||||| || ||||| |||| ||| ||| |||||||| | |||||||| | || ||||| || |
|
|
| T |
32547238 |
acttgaatcttagccatacaaatttttcaggaccaattccagattctattcacaatttgaggcaattgtctacattagatctatcaaattgtcaatttaa |
32547337 |
T |
|
| Q |
177 |
tggaacacttcctagatcaatgtc |
200 |
Q |
| |
|
||| ||||||||||| |||||||| |
|
|
| T |
32547338 |
tggtacacttcctagttcaatgtc |
32547361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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