View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_187 (Length: 295)

Name: NF10829A_low_187
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_187
NF10829A_low_187
[»] chr1 (8 HSPs)
chr1 (10-289)||(48585394-48585673)
chr1 (19-287)||(48639976-48640244)
chr1 (19-232)||(48661628-48661841)
chr1 (19-234)||(48667223-48667438)
chr1 (19-232)||(48618046-48618259)
chr1 (19-232)||(48628942-48629155)
chr1 (19-232)||(48653196-48653409)
chr1 (108-230)||(11547396-11547518)
[»] chr8 (1 HSPs)
chr8 (19-161)||(27228243-27228385)
[»] chr3 (1 HSPs)
chr3 (69-232)||(19665402-19665565)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 48585394 - 48585673
Alignment:
Q  10 atgagatggacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtcc 109  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585394 atgagttgaacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtcc 48585493  T
Q  110 atgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  48585494 atgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggaaaaaaataattgtttatgatacatgaaaatggtttgtttaaatcagc 48585593  T
Q  210 atgattcttgataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctg 289  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585594 atgattcttgatcatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctg 48585673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 48639976 - 48640244
Alignment:
Q  19 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48639976 acatcaatataaggttcttcatttgtagggaaagatgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgacaaaa 48640075  T
Q  119 cagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 218  Q
    |||||||||||||||||||||||||||| ||||||||||||||       || |||||||||||||||||||||||||||||| |||| |||||||||||    
T  48640076 cagaaggaatattgtgttcattagcaacgtcacaaacccatggaaaaaaatagttgtttatgatacatgaaaatggtttgtttgaatcggcatgattctt 48640175  T
Q  219 gataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggc 287  Q
     || ||||| |||||| || |||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  48640176 tatcatttgtgaaataaagtgtctgccagcaacctcaatttcagcatagtgctgaagagctctgaaggc 48640244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 48661628 - 48661841
Alignment:
Q  19 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 118  Q
    |||||||| ||||||||||||||||  |||||||||   |||||||||||||||| |||| ||  ||  ||||| |||  ||||||||||||| |||||     
T  48661628 acatcaatgtaaggttcttcatttgatgggaaaggtaccaatttgtggacatagtcatagcaaacggcaaaaactgcactggaattagtccataataaag 48661727  T
Q  119 cagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 218  Q
    ||||||||||||||||||||  ||| | |||||||||||||||         ||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  48661728 cagaaggaatattgtgttcaaaagctatatcacaaacccatggaagaaatggattgtttatgacacatgaaattggtttgtttgaatcagcatgattctt 48661827  T
Q  219 gataatttgagaaa 232  Q
    ||| ||||||||||    
T  48661828 gatcatttgagaaa 48661841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 48667223 - 48667438
Alignment:
Q  19 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 118  Q
    ||||||||||||||||||||||||| ||||||||||   |||||||||||||| | |||| || ||||||||||||||   |||||||||||| | |||     
T  48667223 acatcaatataaggttcttcatttgaagggaaaggtaacaatttgtggacataatcatagcaaatggtgaaaacagcactagaattagtccataacaaag 48667322  T
Q  119 cagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 218  Q
    ||||||||||||||||||||  ||| | ||||| |||||||||          |||||||| |||||||||| |||||||||  ||||||||||||||||    
T  48667323 cagaaggaatattgtgttcaaaagctatatcactaacccatggaaaaaaagggttgtttataatacatgaaattggtttgttcgaatcagcatgattctt 48667422  T
Q  219 gataatttgagaaata 234  Q
     || ||||||||||||    
T  48667423 tatcatttgagaaata 48667438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 48618259 - 48618046
Alignment:
Q  19 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 118  Q
    ||||||||||||||||||   | || ||||||| ||   | |||||||| ||||||||||||||  |  ||||||||||  || | | ||||| | |||     
T  48618259 acatcaatataaggttctgtttgtgaagggaaacgtaccagtttgtggaaatagttatagtaagcagaaaaaacagcagttgattgaatccataacaaag 48618160  T
Q  119 cagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 218  Q
    |||||||||||   ||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48618159 cagaaggaataccatgttcatcagctacatcacaaacccatggaacaaaaggattgtttatgatacatgaaaatggtttgtttgaatcagcatgattctt 48618060  T
Q  219 gataatttgagaaa 232  Q
    ||| ||||||||||    
T  48618059 gatcatttgagaaa 48618046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 48628942 - 48629155
Alignment:
Q  19 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 118  Q
    ||||||||||||||||||   | || ||| ||||||   | |||||||||||||||||||||||||| ||||||||||   |||||| |||||||||||     
T  48628942 acatcaatataaggttctgtttctgaaggaaaaggtacaagtttgtggacatagttatagtaagtggcgaaaacagcactagaattattccatgataaag 48629041  T
Q  119 cagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 218  Q
    |||||||||| |  ||||||  ||| ||||| |||||||||||         ||||| |||||||||||||| ||||||  || ||||||||||||||||    
T  48629042 cagaaggaatgtcatgttcaaaagctacatcgcaaacccatggaagaaaaggattgtatatgatacatgaaattggtttacttgaatcagcatgattctt 48629141  T
Q  219 gataatttgagaaa 232  Q
    ||| |||| |||||    
T  48629142 gatcattttagaaa 48629155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 48653196 - 48653409
Alignment:
Q  19 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 118  Q
    ||||||||||||||||||||||||| ||||||| ||   | |||||||| |||||| ||||||| ||| | |||||| | ||| | |  |||| ||||||    
T  48653196 acatcaatataaggttcttcatttgaagggaaacgtaccagtttgtggaaatagttgtagtaagcggtaagaacagcggtggattgaacccataataaaa 48653295  T
Q  119 cagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 218  Q
    |||||||||||   ||||||| ||| |||||||||||||| ||         ||| ||||||| |||||||| |||||||||| | ||||||||||||||    
T  48653296 cagaaggaataccatgttcatcagctacatcacaaacccaaggaagaaagggattatttatgagacatgaaattggtttgtttgactcagcatgattctt 48653395  T
Q  219 gataatttgagaaa 232  Q
    ||| ||||||||||    
T  48653396 gatcatttgagaaa 48653409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 11547396 - 11547518
Alignment:
Q  108 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 207  Q
    |||| |||||||||||||||||   ||||||| ||| |||||||||||||| ||         ||||||||||||||| |||| |||||||||| | |||    
T  11547396 ccataataaaacagaaggaataccatgttcatgagctacatcacaaacccaaggaacaaaaggattgtttatgatacaagaaattggtttgtttgactca 11547495  T
Q  208 gcatgattcttgataatttgaga 230  Q
     ||||||||||||| ||||||||    
T  11547496 acatgattcttgatcatttgaga 11547518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 27228243 - 27228385
Alignment:
Q  19 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 118  Q
    |||||||||||||||||| |||| | ||||||| ||   | |||||| | ||||||||||||||  | |||||||||| |||| | | ||||| |||||     
T  27228243 acatcaatataaggttctgcattcgaagggaaacgtaccagtttgtgaaaatagttatagtaagctgcgaaaacagcaccggattgaatccataataaag 27228342  T
Q  119 cagaaggaatattgtgttcattagcaacatcacaaacccatgg 161  Q
    |||||||||| | | |||||  ||| ||||||| |||||||||    
T  27228343 cagaaggaatctcgagttcagcagctacatcactaacccatgg 27228385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 232
Target Start/End: Complemental strand, 19665565 - 19665402
Alignment:
Q  69 atagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnn 168  Q
    ||||||||||||||  ||||||||||||| ||| | | ||||| | ||| ||||||||||||  |||| |  ||| |||||||||||||||||           
T  19665565 atagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccatggaagaaaa 19665466  T
Q  169 taattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa 232  Q
      |||||||||||| || ||||  ||||||||| | |||  ||||||||| || ||||||||||    
T  19665465 ggattgtttatgatgcaagaaataggtttgtttgactcattatgattcttaatcatttgagaaa 19665402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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