View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_19 (Length: 515)
Name: NF10829A_low_19
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 54 - 515
Target Start/End: Original strand, 27801035 - 27801497
Alignment:
| Q |
54 |
ttgattgatagcgcattaaatgactgaggaattggaaacactaagtgaaagcagaatatcaaaattacttggggagggaattgacaaggttctccaaacc |
153 |
Q |
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| T |
27801035 |
ttgattgatagcgcattaaatgactgaggaattggaaacactaagtgaaagcagaatatcaaaattacttggggagggaattgacaaggttctccaaacc |
27801134 |
T |
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| Q |
154 |
acctttggaactcgattaccctctg-taattggagcatcctacactttcgtgcctacaacactttccattcttttggccggtagatataagcacattgtg |
252 |
Q |
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| T |
27801135 |
acctttggaactcgattaccctctgttaattggagcatcctacactttcgtgcctacaacactttccattcttttggccggtagatataagcacattgtg |
27801234 |
T |
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| Q |
253 |
aaccctcatgaggttggtttgtcacaaactttagttgattagatcttcannnnnnnnnnnnnnnngctttctgttaagtaatcattattgttcaattgac |
352 |
Q |
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| T |
27801235 |
aaccctcatgaggttggtttgtcacaagctttagttgatcagatcttcatttttatttttgttttgctttctgttaagtaatcattattgttcaattgac |
27801334 |
T |
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| Q |
353 |
aaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctctccaaattattcttggctttagtggccttttggca |
452 |
Q |
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| T |
27801335 |
aaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctctccaaattattcttggctttagtggccttttggca |
27801434 |
T |
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| Q |
453 |
ctatgtagttgggttttcaaatctgtccggttttaccattttttccaatagaaaataatttta |
515 |
Q |
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| T |
27801435 |
ctatgtagttgggttttcaaatctgtccgattttaccattttttccaatagaaaataatttta |
27801497 |
T |
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Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 146 - 447
Target Start/End: Complemental strand, 26475135 - 26474834
Alignment:
| Q |
146 |
tccaaaccacctttggaactcgattaccctctgtaattggagcatcctacactttcgtgcctacaacactttccattcttttggccggtagatataagca |
245 |
Q |
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||||||| || ||||||||||| |||| | || ||||||| |||||||||||| ||||| ||||| |||| ||| ||||||| |||||||||| | |
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| T |
26475135 |
tccaaacaacatttggaactcgtctacctgcggttattggaggatcctacacttttgtgccaacaactatttcaattattttggctggtagatatagtga |
26475036 |
T |
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| Q |
246 |
cattgtgaaccctcatgaggttggtttgtcacaaactttagttgattagatcttcannnnnnnnnnnnnnnngctttctgttaagtaatcattattgttc |
345 |
Q |
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| T |
26475035 |
cattgtgaatcctcatgaggttggtttctcgcaaatttaagttgattatatcttcatttttatttttgttttgttttctattatgtaatcattgttgtct |
26474936 |
T |
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| Q |
346 |
aattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctctccaaattattcttggctttagtggcct |
445 |
Q |
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| T |
26474935 |
aattgacaaatatgcagaaatttgagaagataatgaggggaacacagggtgcccttatagttgcttcaacacttcaaattgttcttggctttagtggact |
26474836 |
T |
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| Q |
446 |
tt |
447 |
Q |
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|| |
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| T |
26474835 |
tt |
26474834 |
T |
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