View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_192 (Length: 293)

Name: NF10829A_low_192
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_192
NF10829A_low_192
[»] chr1 (4 HSPs)
chr1 (7-162)||(4877259-4877429)
chr1 (7-162)||(4872957-4873129)
chr1 (7-117)||(30189939-30190049)
chr1 (111-162)||(30189876-30189928)
[»] chr8 (4 HSPs)
chr8 (7-162)||(3058315-3058487)
chr8 (7-162)||(3062616-3062788)
chr8 (9-162)||(26082911-26083081)
chr8 (111-159)||(26065168-26065216)
[»] chr6 (1 HSPs)
chr6 (7-162)||(6667972-6668144)
[»] chr4 (2 HSPs)
chr4 (7-162)||(17439412-17439584)
chr4 (7-162)||(17443714-17443886)
[»] chr3 (1 HSPs)
chr3 (52-115)||(28010300-28010363)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 4877429 - 4877259
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatactcctgcagaggtaacttcaactact 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4877429 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 4877330  T
Q  107 acattaa---------------aatatcacaaaatactattgtgtacatctggaatctcaatgtctcaaca 162  Q
    |||||||               |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4877329 acattaaaataaaagaaaacaaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 4877259  T

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Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 4873129 - 4872957
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatactcctgcagaggtaacttcaactact 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4873129 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 4873030  T
Q  107 acattaa-----------------aatatcacaaaatactattgtgtacatctggaatctcaatgtctcaaca 162  Q
    |||||||                 |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4873029 acattaaaataaaagaaaaaataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 4872957  T

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Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 30190049 - 30189939
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatactcctgcagaggtaacttcaactact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  30190049 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttttgcagaggtaacttcaactact 30189950  T
Q  107 acattaaaata 117  Q
    |||||||||||    
T  30189949 acattaaaata 30189939  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 30189928 - 30189876
Alignment:
Q  111 taaaatatcacaaaa-tactattgtgtacatctggaatctcaatgtctcaaca 162  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||||||||    
T  30189928 taaaatatcacaaaaatactattgtgtacatctgaaagctcaatgtctcaaca 30189876  T

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Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 3058487 - 3058315
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatactcctgcagaggtaacttcaactact 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3058487 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 3058388  T
Q  107 acattaa-----------------aatatcacaaaatactattgtgtacatctggaatctcaatgtctcaaca 162  Q
    |||||||                 |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3058387 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 3058315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 3062788 - 3062616
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatactcctgcagaggtaacttcaactact 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3062788 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 3062689  T
Q  107 acattaa-----------------aatatcacaaaatactattgtgtacatctggaatctcaatgtctcaaca 162  Q
    |||||||                 |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3062688 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 3062616  T

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Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 26082911 - 26083081
Alignment:
Q  9 gacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatactcctgcagaggtaacttcaactactac 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26082911 gacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactac 26083010  T
Q  109 at-----------------taaaatatcacaaaatactattgtgtacatctggaatctcaatgtctcaaca 162  Q
    ||                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26083011 attaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 26083081  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 26065168 - 26065216
Alignment:
Q  111 taaaatatcacaaaatactattgtgtacatctggaatctcaatgtctca 159  Q
    |||||||||||||||||||||||| |  ||||| |||||||||||||||    
T  26065168 taaaatatcacaaaatactattgtattaatctgaaatctcaatgtctca 26065216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 6667972 - 6668144
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatactcctgcagaggtaacttcaactact 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6667972 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 6668071  T
Q  107 acat-----------------taaaatatcacaaaatactattgtgtacatctggaatctcaatgtctcaaca 162  Q
    ||||                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6668072 acattaaaataaaagaaaaaataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 6668144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 17439412 - 17439584
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatactcctgcagaggtaacttcaactact 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17439412 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 17439511  T
Q  107 acat-----------------taaaatatcacaaaatactattgtgtacatctggaatctcaatgtctcaaca 162  Q
    ||||                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17439512 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 17439584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 17443714 - 17443886
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatactcctgcagaggtaacttcaactact 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17443714 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 17443813  T
Q  107 acat-----------------taaaatatcacaaaatactattgtgtacatctggaatctcaatgtctcaaca 162  Q
    ||||                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17443814 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 17443886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 28010300 - 28010363
Alignment:
Q  52 aaacactctaacaagtatgggtcaccatactcctgcagaggtaacttcaactactacattaaaa 115  Q
    |||||||  ||||||||||||||||||||||  |||||||||||||||||| |||| |||||||    
T  28010300 aaacacttcaacaagtatgggtcaccatacttatgcagaggtaacttcaacaactatattaaaa 28010363  T

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